Wall clock time and date at job start Tue Mar 31 2020 11:58:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46852 * 110.99536 * 294.20723 * 3 2 1 5 5 C 1.53036 * 109.51896 * 174.15653 * 4 3 2 6 6 C 1.53124 * 109.27860 * 59.18552 * 5 4 3 7 7 C 1.53124 * 109.15630 * 302.34044 * 6 5 4 8 8 H 1.09000 * 109.50026 * 297.71288 * 7 6 5 9 9 C 1.52995 * 109.53275 * 177.61338 * 7 6 5 10 10 N 1.46508 * 109.47090 * 65.18089 * 9 7 6 11 11 S 1.65596 * 119.99912 * 165.00012 * 10 9 7 12 12 O 1.42104 * 104.27463 * 181.06783 * 11 10 9 13 13 O 1.42098 * 104.27979 * 308.92281 * 11 10 9 14 14 C 1.81402 * 104.45201 * 64.99669 * 11 10 9 15 15 C 1.53002 * 109.46936 * 179.97438 * 14 11 10 16 16 C 1.53004 * 109.46828 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.46752 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00309 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99921 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99600 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46852 * 120.00216 * 21 19 17 24 24 H 1.48497 * 109.47163 * 239.99877 * 21 19 17 25 25 C 1.46846 * 111.00017 * 169.99950 * 3 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 31 31 H 1.08993 * 109.46519 * 294.17763 * 4 3 2 32 32 H 1.08996 * 109.45922 * 54.14515 * 4 3 2 33 33 H 1.08998 * 109.50579 * 299.23923 * 5 4 3 34 34 H 1.09003 * 109.53370 * 179.14073 * 5 4 3 35 35 H 1.08998 * 109.52276 * 182.43587 * 6 5 4 36 36 H 1.08997 * 109.57807 * 62.27329 * 6 5 4 37 37 H 1.09006 * 109.47120 * 185.17538 * 9 7 6 38 38 H 1.08995 * 109.47674 * 305.17987 * 9 7 6 39 39 H 0.97000 * 119.99351 * 344.99385 * 10 9 7 40 40 H 1.08996 * 109.47096 * 299.99920 * 14 11 10 41 41 H 1.09004 * 109.46843 * 60.00090 * 14 11 10 42 42 H 1.08996 * 109.47496 * 300.00084 * 15 14 11 43 43 H 1.09004 * 109.46947 * 60.00563 * 15 14 11 44 44 H 1.08996 * 109.47219 * 300.00338 * 16 15 14 45 45 H 1.08995 * 109.46846 * 60.00830 * 16 15 14 46 46 H 0.96999 * 119.99395 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.46239 * 305.85041 * 25 3 2 48 48 H 1.08998 * 109.46409 * 65.83637 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2505 5 6 2.0607 3.5439 -1.1567 6 6 3.5676 3.6483 -0.9058 7 6 3.9174 2.8875 0.3762 8 1 3.4073 3.3471 1.2227 9 6 5.4297 2.9360 0.6033 10 7 5.8417 4.3194 0.8541 11 16 7.3360 4.6351 1.4940 12 8 7.3722 6.0503 1.6181 13 8 7.4111 3.7972 2.6392 14 6 8.5010 4.0779 0.2201 15 6 9.9340 4.3200 0.6984 16 6 10.9166 3.8494 -0.3759 17 6 12.3280 4.0874 0.0955 18 1 12.5064 4.5296 1.0646 19 6 13.3917 3.7405 -0.7103 20 7 13.1744 3.2016 -1.8901 21 14 15.1413 4.0361 -0.1263 22 1 15.1148 4.6485 1.2263 23 1 15.8693 2.7430 -0.0696 24 1 15.8306 4.9512 -1.0711 25 6 3.4680 1.4311 0.2381 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.1942 1.6026 -2.0817 32 1 0.5904 1.9904 -1.4148 33 1 1.5214 4.0137 -0.3343 34 1 1.8115 4.0481 -2.0905 35 1 3.8467 4.6961 -0.7953 36 1 4.1088 3.2138 -1.7463 37 1 5.6879 2.3184 1.4635 38 1 5.9423 2.5590 -0.2817 39 1 5.2392 5.0503 0.6452 40 1 8.3545 3.0139 0.0342 41 1 8.3266 4.6350 -0.7005 42 1 10.0802 5.3841 0.8840 43 1 10.1087 3.7632 1.6190 44 1 10.7703 2.7853 -0.5611 45 1 10.7421 4.4059 -1.2966 46 1 13.9227 2.9579 -2.4572 47 1 3.7027 0.8902 1.1547 48 1 3.9888 0.9685 -0.6003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068907694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:08 Heat of formation + Delta-G solvation = -100.987123 kcal Electronic energy + Delta-G solvation = -24931.912460 eV Core-core repulsion = 21340.631650 eV Total energy + Delta-G solvation = -3591.280810 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.72269 -36.91361 -36.33020 -35.71656 -34.67060 -33.78147 -32.19021 -31.42605 -30.09285 -27.81120 -25.99484 -24.45289 -23.73073 -22.92577 -21.19702 -20.67589 -20.05211 -19.15392 -17.46899 -16.80415 -16.50403 -16.22131 -15.70206 -15.55665 -15.24010 -14.81695 -14.61168 -14.50027 -14.41567 -14.08129 -13.79145 -13.40519 -13.05662 -12.62326 -12.52107 -12.36427 -12.27474 -12.08015 -11.93357 -11.81324 -11.76456 -11.65720 -11.47130 -11.40150 -11.22817 -10.97135 -10.94095 -10.84074 -10.67245 -10.58857 -10.40788 -9.95946 -9.69421 -9.31548 -9.07540 -8.68256 -8.41930 -6.06707 -4.09538 0.48445 2.85695 3.28824 3.36369 3.41456 3.48806 3.96610 4.34378 4.36845 4.41707 4.42219 4.55652 4.67752 4.77694 4.85263 4.95750 5.05722 5.08899 5.12713 5.18097 5.21585 5.23844 5.26977 5.30023 5.36105 5.43370 5.48276 5.56756 5.62072 5.67712 5.70897 5.79234 5.82921 5.89395 5.95066 6.11683 6.26971 6.44995 6.72357 6.73557 6.86585 6.92036 7.56380 7.66144 7.91652 8.32209 8.97042 9.55252 11.04570 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002354 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.933752 B =11890.020668 C =12509.063900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.051 3.949 5 C -0.117 4.117 6 C -0.120 4.120 7 C -0.090 4.090 8 H 0.089 0.911 9 C 0.118 3.882 10 N -1.123 6.123 11 S 2.602 3.398 12 O -0.964 6.964 13 O -0.963 6.963 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.525 4.525 18 H 0.059 0.941 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.894 3.106 22 H -0.271 1.271 23 H -0.283 1.283 24 H -0.283 1.283 25 C 0.060 3.940 26 H 0.058 0.942 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.033 0.967 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.068 0.932 36 H 0.064 0.936 37 H 0.082 0.918 38 H 0.065 0.935 39 H 0.414 0.586 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.066 0.934 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.261 0.739 47 H 0.080 0.920 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.613 -4.225 0.372 26.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.076 4.076 5 C -0.155 4.155 6 C -0.158 4.158 7 C -0.110 4.110 8 H 0.107 0.893 9 C -0.009 4.009 10 N -0.882 5.882 11 S 2.698 3.302 12 O -0.955 6.955 13 O -0.952 6.952 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.563 4.563 18 H 0.077 0.923 19 C -0.145 4.145 20 N -0.535 5.535 21 Si 0.722 3.278 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.069 4.069 26 H 0.077 0.923 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.051 0.949 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.083 0.917 37 H 0.101 0.899 38 H 0.084 0.916 39 H 0.248 0.752 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -26.503 -3.824 1.517 26.821 hybrid contribution 1.240 -0.364 -1.340 1.861 sum -25.263 -4.187 0.177 25.609 Atomic orbital electron populations 1.21807 0.94850 1.01544 1.02465 1.22068 0.96127 0.88689 1.00909 1.61920 1.13716 1.15574 1.35122 1.22159 1.00817 0.94670 0.89987 1.21581 0.96186 0.95603 1.02101 1.21684 0.96110 1.00699 0.97264 1.21354 0.94237 0.95956 0.99422 0.89270 1.21303 0.95589 0.82359 1.01605 1.55690 1.34783 1.13489 1.84231 1.05242 0.74235 0.74330 0.76402 1.93578 1.85767 1.29674 1.86434 1.93564 1.85713 1.69710 1.46252 1.30541 1.13496 1.12332 1.17684 1.21499 0.89349 1.01866 1.01831 1.19065 0.92313 0.96736 0.92700 1.21300 0.91003 1.41018 1.03019 0.92294 1.25032 0.99447 0.95077 0.94909 1.69970 1.31350 1.42471 1.09674 0.86494 0.84449 0.77916 0.78929 1.19586 1.20950 1.20953 1.22067 0.87348 0.96201 1.01253 0.92318 0.92719 0.91803 0.90627 0.94932 0.94924 0.90561 0.91032 0.91431 0.91369 0.91716 0.89935 0.91633 0.75200 0.85586 0.85333 0.91565 0.91562 0.96149 0.96141 0.92967 0.90179 0.94355 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.84 37.16 0.37 -0.48 16 2 C 0.05 0.33 5.68 -3.82 -0.02 0.31 16 3 N -0.54 -4.12 4.66 -234.67 -1.09 -5.22 16 4 C 0.05 0.36 5.29 -3.83 -0.02 0.34 16 5 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 6 C -0.12 -0.86 5.13 -26.60 -0.14 -1.00 16 7 C -0.09 -0.70 2.45 -90.54 -0.22 -0.93 16 8 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 9 C 0.12 1.07 5.53 -4.04 -0.02 1.04 16 10 N -1.12 -11.60 5.77 -10.61 -0.06 -11.66 16 11 S 2.60 37.41 5.46 -107.50 -0.59 36.82 16 12 O -0.96 -16.80 18.08 -57.54 -1.04 -17.84 16 13 O -0.96 -16.73 17.50 -57.54 -1.01 -17.74 16 14 C -0.61 -9.18 6.07 37.16 0.23 -8.96 16 15 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 16 C 0.03 0.76 4.97 -27.88 -0.14 0.62 16 17 C -0.53 -14.80 9.11 -34.44 -0.31 -15.12 16 18 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.90 -26.57 13.29 55.43 0.74 -25.84 16 21 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 22 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 23 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 C 0.06 0.46 4.74 -3.83 -0.02 0.44 16 26 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 27 H 0.05 0.30 6.43 -51.93 -0.33 -0.03 16 28 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 29 H 0.08 0.48 7.99 -51.93 -0.41 0.07 16 30 H 0.03 0.22 8.12 -51.93 -0.42 -0.20 16 31 H 0.03 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.48 6.21 -51.93 -0.32 0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.07 0.47 6.98 -51.93 -0.36 0.10 16 36 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 37 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 39 H 0.41 3.60 7.41 -34.47 -0.26 3.35 16 40 H 0.13 1.67 8.14 -51.93 -0.42 1.25 16 41 H 0.13 1.74 8.14 -51.92 -0.42 1.32 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 47 H 0.08 0.60 8.01 -51.93 -0.42 0.18 16 48 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 LS Contribution 388.18 15.07 5.85 5.85 Total: -1.00 -34.70 388.18 -11.73 -46.44 By element: Atomic # 1 Polarization: 6.82 SS G_CDS: -8.81 Total: -1.99 kcal Atomic # 6 Polarization: -24.72 SS G_CDS: -0.70 Total: -25.42 kcal Atomic # 7 Polarization: -42.29 SS G_CDS: -0.42 Total: -42.71 kcal Atomic # 8 Polarization: -33.53 SS G_CDS: -2.05 Total: -35.58 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Atomic # 16 Polarization: 37.41 SS G_CDS: -0.59 Total: 36.82 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.70 -11.73 -46.44 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.550 kcal (2) G-P(sol) polarization free energy of solvation -34.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.255 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds