Wall clock time and date at job start Tue Mar 31 2020 11:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46906 * 109.47302 * 2 1 4 4 C 1.46852 * 110.99536 * 294.20723 * 3 2 1 5 5 C 1.53036 * 109.51896 * 174.15653 * 4 3 2 6 6 C 1.53124 * 109.27860 * 59.18552 * 5 4 3 7 7 C 1.53124 * 109.15630 * 302.34044 * 6 5 4 8 8 H 1.09000 * 109.50026 * 297.71288 * 7 6 5 9 9 C 1.52995 * 109.53275 * 177.61338 * 7 6 5 10 10 N 1.46508 * 109.47090 * 65.18089 * 9 7 6 11 11 S 1.65596 * 119.99912 * 165.00012 * 10 9 7 12 12 O 1.42104 * 104.27463 * 181.06783 * 11 10 9 13 13 O 1.42098 * 104.27979 * 308.92281 * 11 10 9 14 14 C 1.81402 * 104.45201 * 64.99669 * 11 10 9 15 15 C 1.53002 * 109.46936 * 179.97438 * 14 11 10 16 16 C 1.53004 * 109.46828 * 179.97438 * 15 14 11 17 17 C 1.50695 * 109.46752 * 180.02562 * 16 15 14 18 18 H 1.08004 * 120.00309 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99921 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99600 * 359.97438 * 19 17 16 21 21 Si 1.86805 * 120.00084 * 179.97438 * 19 17 16 22 22 H 1.48497 * 109.46863 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46852 * 120.00216 * 21 19 17 24 24 H 1.48497 * 109.47163 * 239.99877 * 21 19 17 25 25 C 1.46846 * 111.00017 * 169.99950 * 3 2 1 26 26 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46832 * 60.00356 * 1 2 3 28 28 H 1.09004 * 109.47261 * 300.00337 * 1 2 3 29 29 H 1.08998 * 109.47533 * 119.99464 * 2 1 3 30 30 H 1.08996 * 109.47853 * 239.99807 * 2 1 3 31 31 H 1.08993 * 109.46519 * 294.17763 * 4 3 2 32 32 H 1.08996 * 109.45922 * 54.14515 * 4 3 2 33 33 H 1.08998 * 109.50579 * 299.23923 * 5 4 3 34 34 H 1.09003 * 109.53370 * 179.14073 * 5 4 3 35 35 H 1.08998 * 109.52276 * 182.43587 * 6 5 4 36 36 H 1.08997 * 109.57807 * 62.27329 * 6 5 4 37 37 H 1.09006 * 109.47120 * 185.17538 * 9 7 6 38 38 H 1.08995 * 109.47674 * 305.17987 * 9 7 6 39 39 H 0.97000 * 119.99351 * 344.99385 * 10 9 7 40 40 H 1.08996 * 109.47096 * 299.99920 * 14 11 10 41 41 H 1.09004 * 109.46843 * 60.00090 * 14 11 10 42 42 H 1.08996 * 109.47496 * 300.00084 * 15 14 11 43 43 H 1.09004 * 109.46947 * 60.00563 * 15 14 11 44 44 H 1.08996 * 109.47219 * 300.00338 * 16 15 14 45 45 H 1.08995 * 109.46846 * 60.00830 * 16 15 14 46 46 H 0.96999 * 119.99395 * 179.97438 * 20 19 17 47 47 H 1.08993 * 109.46239 * 305.85041 * 25 3 2 48 48 H 1.08998 * 109.46409 * 65.83637 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6651 2.0685 -1.2505 5 6 2.0607 3.5439 -1.1567 6 6 3.5676 3.6483 -0.9058 7 6 3.9174 2.8875 0.3762 8 1 3.4073 3.3471 1.2227 9 6 5.4297 2.9360 0.6033 10 7 5.8417 4.3194 0.8541 11 16 7.3360 4.6351 1.4940 12 8 7.3722 6.0503 1.6181 13 8 7.4111 3.7972 2.6392 14 6 8.5010 4.0779 0.2201 15 6 9.9340 4.3200 0.6984 16 6 10.9166 3.8494 -0.3759 17 6 12.3280 4.0874 0.0955 18 1 12.5064 4.5296 1.0646 19 6 13.3917 3.7405 -0.7103 20 7 13.1744 3.2016 -1.8901 21 14 15.1413 4.0361 -0.1263 22 1 15.1148 4.6485 1.2263 23 1 15.8693 2.7430 -0.0696 24 1 15.8306 4.9512 -1.0711 25 6 3.4680 1.4311 0.2381 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 0.5139 0.8900 29 1 1.8934 -0.5137 0.8900 30 1 1.8934 -0.5138 -0.8899 31 1 2.1942 1.6026 -2.0817 32 1 0.5904 1.9904 -1.4148 33 1 1.5214 4.0137 -0.3343 34 1 1.8115 4.0481 -2.0905 35 1 3.8467 4.6961 -0.7953 36 1 4.1088 3.2138 -1.7463 37 1 5.6879 2.3184 1.4635 38 1 5.9423 2.5590 -0.2817 39 1 5.2392 5.0503 0.6452 40 1 8.3545 3.0139 0.0342 41 1 8.3266 4.6350 -0.7005 42 1 10.0802 5.3841 0.8840 43 1 10.1087 3.7632 1.6190 44 1 10.7703 2.7853 -0.5611 45 1 10.7421 4.4059 -1.2966 46 1 13.9227 2.9579 -2.4572 47 1 3.7027 0.8902 1.1547 48 1 3.9888 0.9685 -0.6003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068907694.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:07 Heat of formation + Delta-G solvation = -125.982393 kcal Electronic energy + Delta-G solvation = -24932.996336 eV Core-core repulsion = 21340.631650 eV Total energy + Delta-G solvation = -3592.364686 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.30731 -38.18156 -37.13232 -36.95359 -36.46083 -34.42566 -34.16076 -32.05336 -30.64494 -29.64927 -26.65652 -25.62472 -25.03628 -23.50164 -22.41495 -21.76903 -20.67194 -20.28406 -18.69715 -18.47728 -17.60428 -17.15774 -16.89097 -16.48558 -16.39469 -15.99416 -15.66420 -15.45192 -15.20126 -14.98716 -14.49924 -14.35587 -14.10017 -14.04541 -13.64052 -13.50321 -13.32935 -13.17949 -13.09783 -12.99710 -12.94360 -12.77636 -12.60396 -12.58008 -12.40328 -12.14767 -12.05610 -11.95365 -11.74578 -11.54651 -11.37691 -11.24919 -11.18784 -11.05356 -10.58463 -10.33398 -9.24579 -8.23460 -6.34125 -0.71298 1.39151 1.39961 1.53228 1.81003 2.39347 2.77545 2.93922 3.10151 3.26618 3.71187 3.78975 3.80373 3.91649 3.98237 4.12832 4.20788 4.30967 4.40228 4.41443 4.49370 4.52163 4.59976 4.64346 4.66664 4.67215 4.79406 4.87761 4.91952 4.94754 4.98403 5.06522 5.08086 5.12818 5.16320 5.23358 5.30637 5.40427 5.45596 5.52561 5.63182 5.79392 6.11804 6.17848 6.19592 6.19987 6.81852 7.35197 8.88179 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020126 B = 0.002354 C = 0.002238 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1390.933752 B =11890.020668 C =12509.063900 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.548 5.548 4 C 0.051 3.949 5 C -0.114 4.114 6 C -0.121 4.121 7 C -0.082 4.082 8 H 0.082 0.918 9 C 0.110 3.890 10 N -1.107 6.107 11 S 2.633 3.367 12 O -0.993 6.993 13 O -0.991 6.991 14 C -0.609 4.609 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.551 4.551 18 H 0.060 0.940 19 C 0.001 3.999 20 N -0.930 5.930 21 Si 0.963 3.037 22 H -0.264 1.264 23 H -0.277 1.277 24 H -0.277 1.277 25 C 0.059 3.941 26 H 0.068 0.932 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.082 0.918 33 H 0.066 0.934 34 H 0.077 0.923 35 H 0.073 0.927 36 H 0.065 0.935 37 H 0.079 0.921 38 H 0.082 0.918 39 H 0.424 0.576 40 H 0.145 0.855 41 H 0.146 0.854 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.080 0.920 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.321 -4.261 0.330 27.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.273 5.273 4 C -0.077 4.077 5 C -0.152 4.152 6 C -0.159 4.159 7 C -0.103 4.103 8 H 0.101 0.899 9 C -0.016 4.016 10 N -0.869 5.869 11 S 2.728 3.272 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.589 4.589 18 H 0.078 0.922 19 C -0.197 4.197 20 N -0.570 5.570 21 Si 0.788 3.212 22 H -0.188 1.188 23 H -0.202 1.202 24 H -0.203 1.203 25 C -0.070 4.070 26 H 0.087 0.913 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.100 0.900 33 H 0.085 0.915 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.084 0.916 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.261 0.739 40 H 0.164 0.836 41 H 0.164 0.836 42 H 0.084 0.916 43 H 0.085 0.915 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.098 0.902 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -27.217 -3.851 1.478 27.528 hybrid contribution 1.379 -0.393 -1.357 1.974 sum -25.838 -4.244 0.120 26.184 Atomic orbital electron populations 1.21771 0.94125 1.02140 1.02185 1.22117 0.96731 0.88245 1.00909 1.61945 1.13581 1.16186 1.35566 1.22187 1.01167 0.94725 0.89587 1.21566 0.95729 0.95478 1.02443 1.21709 0.96516 1.00845 0.96800 1.21269 0.93161 0.96244 0.99591 0.89925 1.21532 0.96658 0.81195 1.02258 1.55270 1.33135 1.14687 1.83849 1.04094 0.74529 0.72951 0.75586 1.93534 1.86501 1.31518 1.86825 1.93529 1.86452 1.70272 1.47841 1.30496 1.10529 1.14181 1.18756 1.21314 0.91392 1.01636 1.00294 1.18965 0.92784 0.95491 0.93519 1.21781 0.92819 1.41068 1.03254 0.92195 1.25943 1.03966 0.94737 0.95017 1.70077 1.32802 1.43305 1.10790 0.85424 0.79020 0.78077 0.78711 1.18809 1.20210 1.20254 1.22061 0.87599 0.95973 1.01334 0.91326 0.92547 0.92455 0.90595 0.94958 0.95197 0.89984 0.91494 0.90412 0.90880 0.91620 0.90297 0.89979 0.73873 0.83638 0.83570 0.91628 0.91534 0.97798 0.97897 0.92646 0.90183 0.94250 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.84 71.98 0.71 -0.76 16 2 C 0.05 0.58 5.68 86.30 0.49 1.07 16 3 N -0.55 -7.72 4.66 -896.37 -4.17 -11.89 16 4 C 0.05 0.63 5.29 86.32 0.46 1.09 16 5 C -0.11 -1.34 6.09 30.65 0.19 -1.15 16 6 C -0.12 -1.51 5.13 30.68 0.16 -1.36 16 7 C -0.08 -1.16 2.45 -10.74 -0.03 -1.19 16 8 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 9 C 0.11 1.78 5.53 86.38 0.48 2.26 16 10 N -1.11 -20.85 5.77 -187.48 -1.08 -21.93 16 11 S 2.63 72.54 5.46 -56.49 -0.31 72.23 16 12 O -0.99 -33.63 18.08 -127.65 -2.31 -35.93 16 13 O -0.99 -33.55 17.50 -127.65 -2.23 -35.78 16 14 C -0.61 -17.61 6.07 71.98 0.44 -17.17 16 15 C -0.11 -4.31 5.16 30.60 0.16 -4.15 16 16 C 0.03 1.57 4.97 29.85 0.15 1.72 16 17 C -0.55 -31.34 9.11 25.60 0.23 -31.11 16 18 H 0.06 3.30 7.74 -2.91 -0.02 3.28 16 19 C 0.00 0.09 5.46 84.66 0.46 0.55 16 20 N -0.93 -55.61 13.29 21.45 0.28 -55.32 16 21 Si 0.96 44.22 29.54 68.60 2.03 46.24 16 22 H -0.26 -11.69 7.11 99.48 0.71 -10.98 16 23 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 24 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 25 C 0.06 0.83 4.74 86.33 0.41 1.24 16 26 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 27 H 0.06 0.55 6.43 -2.39 -0.02 0.53 16 28 H 0.06 0.66 8.14 -2.38 -0.02 0.64 16 29 H 0.08 0.90 7.99 -2.39 -0.02 0.88 16 30 H 0.03 0.39 8.12 -2.39 -0.02 0.37 16 31 H 0.03 0.39 8.14 -2.39 -0.02 0.37 16 32 H 0.08 0.92 6.21 -2.39 -0.01 0.90 16 33 H 0.07 0.85 8.14 -2.39 -0.02 0.84 16 34 H 0.08 0.75 8.14 -2.39 -0.02 0.74 16 35 H 0.07 0.84 6.98 -2.39 -0.02 0.82 16 36 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 37 H 0.08 1.38 7.69 -2.38 -0.02 1.36 16 38 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 39 H 0.42 6.52 7.41 -96.74 -0.72 5.81 16 40 H 0.15 3.62 8.14 -2.39 -0.02 3.60 16 41 H 0.15 3.71 8.14 -2.39 -0.02 3.69 16 42 H 0.07 2.60 8.14 -2.39 -0.02 2.58 16 43 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 47 H 0.08 1.11 8.01 -2.39 -0.02 1.09 16 48 H 0.04 0.54 8.14 -2.39 -0.02 0.52 16 Total: -1.00 -73.64 388.18 -3.30 -76.94 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: 0.20 Total: 14.42 kcal Atomic # 6 Polarization: -53.27 SS G_CDS: 4.30 Total: -48.97 kcal Atomic # 7 Polarization: -84.17 SS G_CDS: -4.97 Total: -89.15 kcal Atomic # 8 Polarization: -67.18 SS G_CDS: -4.54 Total: -71.72 kcal Atomic # 14 Polarization: 44.22 SS G_CDS: 2.03 Total: 46.24 kcal Atomic # 16 Polarization: 72.54 SS G_CDS: -0.31 Total: 72.23 kcal Total: -73.64 -3.30 -76.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907694.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -49.046 kcal (2) G-P(sol) polarization free energy of solvation -73.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.936 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds