Wall clock time and date at job start Tue Mar 31 2020 11:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47035 * 2 1 4 4 C 1.46854 * 111.00569 * 45.78693 * 3 2 1 5 5 C 1.53029 * 109.52631 * 185.84392 * 4 3 2 6 6 C 1.53126 * 109.27776 * 300.81940 * 5 4 3 7 7 C 1.53119 * 109.15915 * 57.65686 * 6 5 4 8 8 H 1.08994 * 109.53841 * 62.30718 * 7 6 5 9 9 C 1.53000 * 109.50137 * 182.40853 * 7 6 5 10 10 N 1.46499 * 109.46840 * 294.79958 * 9 7 6 11 11 S 1.65599 * 120.00012 * 165.00017 * 10 9 7 12 12 O 1.42099 * 104.27938 * 181.07373 * 11 10 9 13 13 O 1.42106 * 104.27874 * 308.93199 * 11 10 9 14 14 C 1.81401 * 104.44946 * 65.00106 * 11 10 9 15 15 C 1.53003 * 109.47478 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47040 * 180.02562 * 15 14 11 17 17 C 1.50707 * 109.47014 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99911 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00330 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47273 * 90.00118 * 21 19 17 23 23 H 1.48501 * 109.47441 * 210.00051 * 21 19 17 24 24 H 1.48506 * 109.47325 * 330.00175 * 21 19 17 25 25 C 1.46848 * 111.00222 * 170.00222 * 3 2 1 26 26 H 1.09001 * 109.47229 * 300.00513 * 1 2 3 27 27 H 1.09004 * 109.47234 * 60.00172 * 1 2 3 28 28 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47058 * 239.99779 * 2 1 3 30 30 H 1.09001 * 109.46976 * 119.99376 * 2 1 3 31 31 H 1.09002 * 109.45859 * 305.86219 * 4 3 2 32 32 H 1.08998 * 109.45754 * 65.81990 * 4 3 2 33 33 H 1.09001 * 109.50823 * 60.76251 * 5 4 3 34 34 H 1.09000 * 109.50263 * 180.84341 * 5 4 3 35 35 H 1.09005 * 109.52192 * 297.75275 * 6 5 4 36 36 H 1.08999 * 109.52329 * 177.56336 * 6 5 4 37 37 H 1.09002 * 109.47398 * 54.80284 * 9 7 6 38 38 H 1.09001 * 109.47194 * 174.80465 * 9 7 6 39 39 H 0.97001 * 120.00191 * 345.00817 * 10 9 7 40 40 H 1.09006 * 109.47313 * 300.00191 * 14 11 10 41 41 H 1.09007 * 109.46876 * 60.00312 * 14 11 10 42 42 H 1.08999 * 109.46623 * 300.00428 * 15 14 11 43 43 H 1.08997 * 109.46812 * 60.00211 * 15 14 11 44 44 H 1.08999 * 109.47593 * 299.99627 * 16 15 14 45 45 H 1.08998 * 109.47830 * 60.00214 * 16 15 14 46 46 H 0.96993 * 119.99934 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.46182 * 54.13792 * 25 3 2 48 48 H 1.09000 * 109.44935 * 294.16770 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6621 0.8538 6 6 3.2354 3.7658 1.0921 7 6 3.9655 2.8705 0.0871 8 1 3.7651 3.2205 -0.9256 9 6 5.4706 2.9216 0.3568 10 7 5.9677 4.2748 0.0961 11 16 7.4615 4.7288 0.6483 12 8 7.5894 6.0837 0.2393 13 8 7.4480 4.3773 2.0251 14 6 8.6214 3.6757 -0.2662 15 6 10.0535 4.0033 0.1612 16 6 11.0317 3.1154 -0.6105 17 6 12.4423 3.4377 -0.1891 18 1 12.6230 4.1998 0.5544 19 6 13.5021 2.7595 -0.7529 20 7 13.2822 1.8317 -1.6587 21 14 15.2506 3.1594 -0.2311 22 1 15.6334 2.2996 0.9176 23 1 16.1753 2.9099 -1.3659 24 1 15.3332 4.5869 0.1701 25 6 3.4680 1.4312 0.2380 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.2222 2.1206 0.7995 32 1 1.5177 1.8420 1.9875 33 1 1.4901 4.0249 -0.1465 34 1 1.1984 4.2643 1.5933 35 1 3.4673 3.4398 2.1060 36 1 3.5551 4.7993 0.9587 37 1 5.6626 2.6580 1.3969 38 1 5.9812 2.2148 -0.2973 39 1 5.4218 4.9050 -0.3997 40 1 8.4088 2.6285 -0.0506 41 1 8.5106 3.8563 -1.3354 42 1 10.2663 5.0504 -0.0540 43 1 10.1640 3.8224 1.2304 44 1 10.8191 2.0682 -0.3957 45 1 10.9212 3.2967 -1.6796 46 1 14.0278 1.3544 -2.0550 47 1 3.9755 0.7936 -0.4859 48 1 3.6815 1.0770 1.2465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068907699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:10 Heat of formation + Delta-G solvation = -98.233445 kcal Electronic energy + Delta-G solvation = -24936.990577 eV Core-core repulsion = 21345.829176 eV Total energy + Delta-G solvation = -3591.161402 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.74898 -36.92373 -36.35831 -35.71830 -34.66608 -33.78214 -32.18563 -31.48078 -29.97883 -27.80564 -26.04520 -24.46509 -23.72715 -22.97886 -21.06547 -20.66232 -20.10525 -19.11204 -17.43864 -16.81907 -16.51438 -16.15829 -15.73592 -15.45473 -15.28944 -14.98962 -14.75330 -14.48327 -14.33294 -14.09131 -13.67669 -13.41009 -12.99090 -12.62969 -12.57974 -12.32596 -12.27596 -12.01667 -11.92139 -11.83069 -11.76383 -11.74420 -11.42071 -11.39888 -11.22288 -10.93332 -10.92199 -10.84754 -10.66629 -10.58062 -10.42001 -9.95050 -9.67852 -9.31298 -9.07521 -8.65940 -8.40961 -6.05910 -4.08902 0.48442 2.85668 3.30353 3.36465 3.40635 3.50127 3.96266 4.33503 4.37526 4.42497 4.48045 4.54228 4.70242 4.75135 4.83860 4.93242 5.04886 5.07914 5.14373 5.19039 5.21886 5.24117 5.29044 5.30746 5.37905 5.43347 5.50307 5.57621 5.61942 5.68867 5.71425 5.76344 5.83232 5.89941 5.97391 6.13464 6.27211 6.45345 6.72430 6.74052 6.86981 6.92289 7.56842 7.66822 7.92212 8.32732 8.97386 9.55795 11.05327 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002354 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.787459 B =11893.255126 C =12894.203243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.538 5.538 4 C 0.047 3.953 5 C -0.118 4.118 6 C -0.119 4.119 7 C -0.088 4.088 8 H 0.088 0.912 9 C 0.118 3.882 10 N -1.123 6.123 11 S 2.602 3.398 12 O -0.964 6.964 13 O -0.963 6.963 14 C -0.609 4.609 15 C -0.106 4.106 16 C 0.030 3.970 17 C -0.526 4.526 18 H 0.058 0.942 19 C 0.057 3.943 20 N -0.895 5.895 21 Si 0.895 3.105 22 H -0.280 1.280 23 H -0.286 1.286 24 H -0.273 1.273 25 C 0.060 3.940 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.059 0.941 29 H 0.076 0.924 30 H 0.033 0.967 31 H 0.080 0.920 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.069 0.931 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.414 0.586 40 H 0.126 0.874 41 H 0.129 0.871 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.021 0.979 46 H 0.261 0.739 47 H 0.080 0.920 48 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.311 -1.835 2.735 27.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.078 4.078 3 N -0.263 5.263 4 C -0.080 4.080 5 C -0.155 4.155 6 C -0.157 4.157 7 C -0.108 4.108 8 H 0.106 0.894 9 C -0.009 4.009 10 N -0.881 5.881 11 S 2.698 3.302 12 O -0.955 6.955 13 O -0.953 6.953 14 C -0.741 4.741 15 C -0.145 4.145 16 C -0.008 4.008 17 C -0.564 4.564 18 H 0.076 0.924 19 C -0.144 4.144 20 N -0.534 5.534 21 Si 0.722 3.278 22 H -0.206 1.206 23 H -0.212 1.212 24 H -0.197 1.197 25 C -0.069 4.069 26 H 0.076 0.924 27 H 0.083 0.917 28 H 0.078 0.922 29 H 0.095 0.905 30 H 0.051 0.949 31 H 0.099 0.901 32 H 0.050 0.950 33 H 0.089 0.911 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.087 0.913 37 H 0.098 0.902 38 H 0.086 0.914 39 H 0.248 0.752 40 H 0.144 0.856 41 H 0.147 0.853 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.039 0.961 46 H 0.071 0.929 47 H 0.098 0.902 48 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -27.073 -1.229 2.933 27.259 hybrid contribution 1.032 -0.581 0.242 1.209 sum -26.040 -1.810 3.176 26.296 Atomic orbital electron populations 1.21946 0.95044 1.01934 1.02473 1.22083 0.95723 0.88994 1.00966 1.61968 1.03767 1.10568 1.50004 1.22241 0.98915 0.93638 0.93224 1.21601 0.95986 0.95516 1.02431 1.21667 0.94725 1.00208 0.99065 1.21345 0.93002 0.95409 1.01083 0.89387 1.21309 0.94825 0.82918 1.01836 1.55664 1.36142 1.21884 1.74419 1.05246 0.74209 0.75316 0.75464 1.93577 1.85523 1.32499 1.83860 1.93564 1.85657 1.84972 1.31097 1.30544 1.13421 1.15548 1.14557 1.21497 0.89377 1.02203 1.01462 1.19062 0.92325 0.94239 0.95168 1.21259 0.91209 1.20684 1.23275 0.92365 1.25024 0.99407 0.95029 0.94965 1.69954 1.31596 1.24208 1.27688 0.86551 0.84199 0.78874 0.78152 1.20575 1.21178 1.19744 1.22068 0.87998 0.96522 1.00286 0.92370 0.91737 0.92167 0.90509 0.94879 0.90137 0.94995 0.91072 0.91503 0.91803 0.91270 0.90178 0.91402 0.75172 0.85565 0.85274 0.91582 0.91588 0.96144 0.96110 0.92901 0.90194 0.94341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.86 9.16 37.16 0.34 -0.52 16 2 C 0.05 0.33 5.99 -3.83 -0.02 0.31 16 3 N -0.54 -4.14 4.81 -234.67 -1.13 -5.27 16 4 C 0.05 0.34 4.85 -3.83 -0.02 0.32 16 5 C -0.12 -0.83 6.09 -26.65 -0.16 -0.99 16 6 C -0.12 -0.96 5.14 -26.60 -0.14 -1.09 16 7 C -0.09 -0.69 2.38 -90.54 -0.22 -0.91 16 8 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 9 C 0.12 1.06 5.52 -4.04 -0.02 1.04 16 10 N -1.12 -11.50 5.46 -10.61 -0.06 -11.56 16 11 S 2.60 37.32 5.46 -107.50 -0.59 36.74 16 12 O -0.96 -16.78 18.08 -57.54 -1.04 -17.82 16 13 O -0.96 -16.66 17.50 -57.54 -1.01 -17.67 16 14 C -0.61 -9.20 6.07 37.16 0.23 -8.98 16 15 C -0.11 -2.14 5.16 -26.73 -0.14 -2.28 16 16 C 0.03 0.77 4.97 -27.88 -0.14 0.63 16 17 C -0.53 -14.84 9.11 -34.44 -0.31 -15.15 16 18 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 19 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 20 N -0.90 -26.59 13.29 55.43 0.74 -25.86 16 21 Si 0.89 21.62 29.54 -169.99 -5.02 16.60 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.25 16 23 H -0.29 -6.83 7.11 56.52 0.40 -6.42 16 24 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 25 C 0.06 0.46 4.71 -3.83 -0.02 0.44 16 26 H 0.06 0.31 6.21 -51.93 -0.32 -0.02 16 27 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 29 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.22 8.08 -51.93 -0.42 -0.20 16 31 H 0.08 0.51 5.81 -51.93 -0.30 0.20 16 32 H 0.03 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 35 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.07 0.57 7.63 -51.93 -0.40 0.17 16 37 H 0.08 0.78 7.69 -51.93 -0.40 0.38 16 38 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.41 3.55 8.36 -34.47 -0.29 3.26 16 40 H 0.13 1.68 8.14 -51.92 -0.42 1.26 16 41 H 0.13 1.75 8.14 -51.92 -0.42 1.33 16 42 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 46 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 47 H 0.08 0.58 8.12 -51.93 -0.42 0.15 16 48 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 LS Contribution 388.29 15.07 5.85 5.85 Total: -1.00 -34.68 388.29 -11.82 -46.50 By element: Atomic # 1 Polarization: 6.97 SS G_CDS: -8.85 Total: -1.88 kcal Atomic # 6 Polarization: -24.93 SS G_CDS: -0.72 Total: -25.65 kcal Atomic # 7 Polarization: -42.23 SS G_CDS: -0.45 Total: -42.68 kcal Atomic # 8 Polarization: -33.44 SS G_CDS: -2.05 Total: -35.48 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -5.02 Total: 16.60 kcal Atomic # 16 Polarization: 37.32 SS G_CDS: -0.59 Total: 36.74 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.68 -11.82 -46.50 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.730 kcal (2) G-P(sol) polarization free energy of solvation -34.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds