Wall clock time and date at job start Tue Mar 31 2020 11:58:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46896 * 109.47035 * 2 1 4 4 C 1.46854 * 111.00569 * 45.78693 * 3 2 1 5 5 C 1.53029 * 109.52631 * 185.84392 * 4 3 2 6 6 C 1.53126 * 109.27776 * 300.81940 * 5 4 3 7 7 C 1.53119 * 109.15915 * 57.65686 * 6 5 4 8 8 H 1.08994 * 109.53841 * 62.30718 * 7 6 5 9 9 C 1.53000 * 109.50137 * 182.40853 * 7 6 5 10 10 N 1.46499 * 109.46840 * 294.79958 * 9 7 6 11 11 S 1.65599 * 120.00012 * 165.00017 * 10 9 7 12 12 O 1.42099 * 104.27938 * 181.07373 * 11 10 9 13 13 O 1.42106 * 104.27874 * 308.93199 * 11 10 9 14 14 C 1.81401 * 104.44946 * 65.00106 * 11 10 9 15 15 C 1.53003 * 109.47478 * 180.02562 * 14 11 10 16 16 C 1.52993 * 109.47040 * 180.02562 * 15 14 11 17 17 C 1.50707 * 109.47014 * 180.02562 * 16 15 14 18 18 H 1.07998 * 119.99785 * 359.97438 * 17 16 15 19 19 C 1.37878 * 119.99911 * 179.97438 * 17 16 15 20 20 N 1.31513 * 120.00330 * 0.02562 * 19 17 16 21 21 Si 1.86798 * 119.99669 * 179.97438 * 19 17 16 22 22 H 1.48502 * 109.47273 * 90.00118 * 21 19 17 23 23 H 1.48501 * 109.47441 * 210.00051 * 21 19 17 24 24 H 1.48506 * 109.47325 * 330.00175 * 21 19 17 25 25 C 1.46848 * 111.00222 * 170.00222 * 3 2 1 26 26 H 1.09001 * 109.47229 * 300.00513 * 1 2 3 27 27 H 1.09004 * 109.47234 * 60.00172 * 1 2 3 28 28 H 1.09000 * 109.47411 * 179.97438 * 1 2 3 29 29 H 1.08993 * 109.47058 * 239.99779 * 2 1 3 30 30 H 1.09001 * 109.46976 * 119.99376 * 2 1 3 31 31 H 1.09002 * 109.45859 * 305.86219 * 4 3 2 32 32 H 1.08998 * 109.45754 * 65.81990 * 4 3 2 33 33 H 1.09001 * 109.50823 * 60.76251 * 5 4 3 34 34 H 1.09000 * 109.50263 * 180.84341 * 5 4 3 35 35 H 1.09005 * 109.52192 * 297.75275 * 6 5 4 36 36 H 1.08999 * 109.52329 * 177.56336 * 6 5 4 37 37 H 1.09002 * 109.47398 * 54.80284 * 9 7 6 38 38 H 1.09001 * 109.47194 * 174.80465 * 9 7 6 39 39 H 0.97001 * 120.00191 * 345.00817 * 10 9 7 40 40 H 1.09006 * 109.47313 * 300.00191 * 14 11 10 41 41 H 1.09007 * 109.46876 * 60.00312 * 14 11 10 42 42 H 1.08999 * 109.46623 * 300.00428 * 15 14 11 43 43 H 1.08997 * 109.46812 * 60.00211 * 15 14 11 44 44 H 1.08999 * 109.47593 * 299.99627 * 16 15 14 45 45 H 1.08998 * 109.47830 * 60.00214 * 16 15 14 46 46 H 0.96993 * 119.99934 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.46182 * 54.13792 * 25 3 2 48 48 H 1.09000 * 109.44935 * 294.16770 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6621 0.8538 6 6 3.2354 3.7658 1.0921 7 6 3.9655 2.8705 0.0871 8 1 3.7651 3.2205 -0.9256 9 6 5.4706 2.9216 0.3568 10 7 5.9677 4.2748 0.0961 11 16 7.4615 4.7288 0.6483 12 8 7.5894 6.0837 0.2393 13 8 7.4480 4.3773 2.0251 14 6 8.6214 3.6757 -0.2662 15 6 10.0535 4.0033 0.1612 16 6 11.0317 3.1154 -0.6105 17 6 12.4423 3.4377 -0.1891 18 1 12.6230 4.1998 0.5544 19 6 13.5021 2.7595 -0.7529 20 7 13.2822 1.8317 -1.6587 21 14 15.2506 3.1594 -0.2311 22 1 15.6334 2.2996 0.9176 23 1 16.1753 2.9099 -1.3659 24 1 15.3332 4.5869 0.1701 25 6 3.4680 1.4312 0.2380 26 1 -0.3634 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8901 31 1 0.2222 2.1206 0.7995 32 1 1.5177 1.8420 1.9875 33 1 1.4901 4.0249 -0.1465 34 1 1.1984 4.2643 1.5933 35 1 3.4673 3.4398 2.1060 36 1 3.5551 4.7993 0.9587 37 1 5.6626 2.6580 1.3969 38 1 5.9812 2.2148 -0.2973 39 1 5.4218 4.9050 -0.3997 40 1 8.4088 2.6285 -0.0506 41 1 8.5106 3.8563 -1.3354 42 1 10.2663 5.0504 -0.0540 43 1 10.1640 3.8224 1.2304 44 1 10.8191 2.0682 -0.3957 45 1 10.9212 3.2967 -1.6796 46 1 14.0278 1.3544 -2.0550 47 1 3.9755 0.7936 -0.4859 48 1 3.6815 1.0770 1.2465 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068907699.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:10 Heat of formation + Delta-G solvation = -123.361143 kcal Electronic energy + Delta-G solvation = -24938.080196 eV Core-core repulsion = 21345.829176 eV Total energy + Delta-G solvation = -3592.251020 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34453 -38.18442 -37.15669 -36.96336 -36.45870 -34.44806 -34.15833 -32.11053 -30.53957 -29.64506 -26.71226 -25.62286 -25.06339 -23.57338 -22.41365 -21.63834 -20.78829 -20.20423 -18.67821 -18.45317 -17.59624 -17.13350 -16.94480 -16.50619 -16.26645 -15.97336 -15.86729 -15.42637 -15.39633 -14.93999 -14.49396 -14.25914 -14.09110 -14.04735 -13.66172 -13.50120 -13.30442 -13.18784 -13.11003 -13.02404 -12.95569 -12.75595 -12.62134 -12.51661 -12.41932 -12.15816 -12.02161 -11.98018 -11.74142 -11.55145 -11.38355 -11.28290 -11.17839 -11.07011 -10.57614 -10.30435 -9.23428 -8.22918 -6.33773 -0.71225 1.40040 1.40699 1.52113 1.81113 2.39613 2.77167 2.94628 3.10564 3.26726 3.69064 3.79811 3.81606 3.91614 3.96857 4.15973 4.19196 4.29896 4.36355 4.41225 4.49617 4.54559 4.58530 4.63479 4.64379 4.67086 4.77899 4.87717 4.90046 4.93060 4.99133 5.07101 5.08681 5.13516 5.15731 5.22043 5.28883 5.37050 5.45610 5.51270 5.63416 5.79592 6.12598 6.17406 6.19265 6.19820 6.81947 7.35470 8.88527 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021291 B = 0.002354 C = 0.002171 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1314.787459 B =11893.255126 C =12894.203243 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.047 3.953 3 N -0.545 5.545 4 C 0.047 3.953 5 C -0.114 4.114 6 C -0.122 4.122 7 C -0.081 4.081 8 H 0.093 0.907 9 C 0.110 3.890 10 N -1.106 6.106 11 S 2.633 3.367 12 O -0.994 6.994 13 O -0.991 6.991 14 C -0.610 4.610 15 C -0.107 4.107 16 C 0.031 3.969 17 C -0.552 4.552 18 H 0.060 0.940 19 C 0.002 3.998 20 N -0.929 5.929 21 Si 0.963 3.037 22 H -0.272 1.272 23 H -0.280 1.280 24 H -0.265 1.265 25 C 0.059 3.941 26 H 0.059 0.941 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.078 0.922 30 H 0.030 0.970 31 H 0.089 0.911 32 H 0.026 0.974 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.054 0.946 36 H 0.067 0.933 37 H 0.074 0.926 38 H 0.087 0.913 39 H 0.425 0.575 40 H 0.146 0.854 41 H 0.146 0.854 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.085 0.915 48 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.160 -1.834 2.763 28.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.080 4.080 3 N -0.271 5.271 4 C -0.080 4.080 5 C -0.152 4.152 6 C -0.160 4.160 7 C -0.101 4.101 8 H 0.111 0.889 9 C -0.017 4.017 10 N -0.868 5.868 11 S 2.728 3.272 12 O -0.984 6.984 13 O -0.981 6.981 14 C -0.740 4.740 15 C -0.146 4.146 16 C -0.008 4.008 17 C -0.590 4.590 18 H 0.078 0.922 19 C -0.196 4.196 20 N -0.569 5.569 21 Si 0.787 3.213 22 H -0.197 1.197 23 H -0.205 1.205 24 H -0.190 1.190 25 C -0.070 4.070 26 H 0.078 0.922 27 H 0.080 0.920 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.049 0.951 31 H 0.107 0.893 32 H 0.045 0.955 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.073 0.927 36 H 0.085 0.915 37 H 0.092 0.908 38 H 0.105 0.895 39 H 0.262 0.738 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.083 0.917 43 H 0.085 0.915 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.104 0.896 48 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -27.926 -1.219 2.961 28.109 hybrid contribution 1.216 -0.623 0.218 1.384 sum -26.710 -1.843 3.179 26.962 Atomic orbital electron populations 1.21910 0.94143 1.02541 1.02371 1.22136 0.96507 0.88473 1.00890 1.61996 1.03703 1.11188 1.50169 1.22265 0.99406 0.93515 0.92833 1.21579 0.95280 0.95673 1.02657 1.21692 0.95583 1.00064 0.98632 1.21277 0.92000 0.95609 1.01210 0.88875 1.21540 0.95879 0.82193 1.02070 1.55235 1.34422 1.22901 1.74264 1.04096 0.74508 0.74106 0.74478 1.93533 1.86314 1.34414 1.84128 1.93530 1.86347 1.85201 1.33021 1.30506 1.10488 1.17194 1.15858 1.21311 0.91439 1.01045 1.00836 1.18964 0.92798 0.94290 0.94707 1.21750 0.93011 1.20829 1.23445 0.92203 1.25938 1.03937 0.94826 0.94931 1.70065 1.33015 1.25146 1.28716 0.85478 0.78780 0.78999 0.78006 1.19694 1.20549 1.18955 1.22070 0.88314 0.96346 1.00234 0.92188 0.92038 0.91262 0.90403 0.95128 0.89255 0.95544 0.91084 0.90700 0.92711 0.91466 0.90802 0.89521 0.73791 0.83601 0.83541 0.91670 0.91545 0.97787 0.97885 0.92631 0.89614 0.94803 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.16 71.98 0.66 -0.79 16 2 C 0.05 0.57 5.99 86.30 0.52 1.09 16 3 N -0.55 -7.62 4.81 -896.38 -4.31 -11.92 16 4 C 0.05 0.61 4.85 86.32 0.42 1.03 16 5 C -0.11 -1.44 6.09 30.65 0.19 -1.26 16 6 C -0.12 -1.81 5.14 30.68 0.16 -1.65 16 7 C -0.08 -1.14 2.38 -10.74 -0.03 -1.16 16 8 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 9 C 0.11 1.77 5.52 86.38 0.48 2.25 16 10 N -1.11 -20.69 5.46 -187.49 -1.02 -21.72 16 11 S 2.63 72.53 5.46 -56.49 -0.31 72.23 16 12 O -0.99 -33.64 18.08 -127.65 -2.31 -35.95 16 13 O -0.99 -33.47 17.50 -127.65 -2.23 -35.71 16 14 C -0.61 -17.71 6.07 71.98 0.44 -17.28 16 15 C -0.11 -4.32 5.16 30.59 0.16 -4.16 16 16 C 0.03 1.58 4.97 29.85 0.15 1.72 16 17 C -0.55 -31.45 9.11 25.60 0.23 -31.22 16 18 H 0.06 3.29 7.74 -2.91 -0.02 3.27 16 19 C 0.00 0.11 5.46 84.65 0.46 0.57 16 20 N -0.93 -55.69 13.29 21.45 0.28 -55.40 16 21 Si 0.96 44.24 29.54 68.60 2.03 46.27 16 22 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 23 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C 0.06 0.83 4.71 86.33 0.41 1.23 16 26 H 0.06 0.54 6.21 -2.39 -0.01 0.53 16 27 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 28 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 29 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.03 0.38 8.08 -2.39 -0.02 0.36 16 31 H 0.09 0.98 5.81 -2.39 -0.01 0.97 16 32 H 0.03 0.37 8.14 -2.39 -0.02 0.35 16 33 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 34 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 35 H 0.05 0.91 8.14 -2.38 -0.02 0.89 16 36 H 0.07 1.01 7.63 -2.39 -0.02 0.99 16 37 H 0.07 1.33 7.69 -2.39 -0.02 1.31 16 38 H 0.09 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.43 6.42 8.36 -96.75 -0.81 5.62 16 40 H 0.15 3.64 8.14 -2.39 -0.02 3.62 16 41 H 0.15 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.06 2.59 8.14 -2.39 -0.02 2.57 16 43 H 0.07 2.63 8.14 -2.39 -0.02 2.61 16 44 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 45 H 0.00 0.15 8.14 -2.39 -0.02 0.13 16 46 H 0.26 14.88 8.31 -92.71 -0.77 14.10 16 47 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 48 H 0.03 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -73.70 388.29 -3.53 -77.23 By element: Atomic # 1 Polarization: 14.50 SS G_CDS: 0.10 Total: 14.61 kcal Atomic # 6 Polarization: -53.86 SS G_CDS: 4.24 Total: -49.63 kcal Atomic # 7 Polarization: -84.00 SS G_CDS: -5.05 Total: -89.04 kcal Atomic # 8 Polarization: -67.12 SS G_CDS: -4.54 Total: -71.66 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.27 kcal Atomic # 16 Polarization: 72.53 SS G_CDS: -0.31 Total: 72.23 kcal Total: -73.70 -3.53 -77.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068907699.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.135 kcal (2) G-P(sol) polarization free energy of solvation -73.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.226 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds