Wall clock time and date at job start Tue Mar 31 2020 12:27:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46895 * 110.99872 * 2 1 4 4 C 1.52996 * 109.47683 * 66.03976 * 3 2 1 5 5 N 1.46503 * 109.47634 * 179.97438 * 4 3 2 6 6 S 1.65599 * 120.00105 * 165.00516 * 5 4 3 7 7 O 1.42100 * 104.27319 * 181.07400 * 6 5 4 8 8 O 1.42108 * 104.27450 * 308.92613 * 6 5 4 9 9 C 1.81390 * 104.45078 * 64.99878 * 6 5 4 10 10 C 1.52999 * 109.47152 * 179.97438 * 9 6 5 11 11 C 1.53003 * 109.47324 * 180.02562 * 10 9 6 12 12 C 1.50698 * 109.46965 * 179.97438 * 11 10 9 13 13 H 1.07998 * 120.00254 * 359.97438 * 12 11 10 14 14 C 1.37880 * 119.99706 * 180.02562 * 12 11 10 15 15 N 1.31516 * 120.00001 * 180.02562 * 14 12 11 16 16 Si 1.86793 * 120.00210 * 359.97438 * 14 12 11 17 17 H 1.48508 * 109.47287 * 90.00130 * 16 14 12 18 18 H 1.48498 * 109.47623 * 210.00204 * 16 14 12 19 19 H 1.48504 * 109.47307 * 330.00259 * 16 14 12 20 20 C 1.46892 * 111.00189 * 236.04264 * 2 1 3 21 21 C 1.54961 * 110.92423 * 190.49504 * 20 2 1 22 22 C 1.54270 * 104.16191 * 156.29494 * 21 20 2 23 23 C 1.53869 * 106.63967 * 336.44607 * 22 21 20 24 24 C 1.54268 * 106.60115 * 359.97438 * 23 22 21 25 25 H 1.08998 * 109.46887 * 183.95462 * 1 2 3 26 26 H 1.08998 * 109.46845 * 303.95821 * 1 2 3 27 27 H 1.09004 * 109.46731 * 63.95898 * 1 2 3 28 28 H 1.09001 * 109.47438 * 186.04864 * 3 2 1 29 29 H 1.09011 * 109.47091 * 306.04163 * 3 2 1 30 30 H 1.08997 * 109.47811 * 300.00606 * 4 3 2 31 31 H 1.09011 * 109.46704 * 59.99950 * 4 3 2 32 32 H 0.97004 * 119.99292 * 345.00752 * 5 4 3 33 33 H 1.08997 * 109.47809 * 300.00083 * 9 6 5 34 34 H 1.09001 * 109.47220 * 60.00514 * 9 6 5 35 35 H 1.09005 * 109.47104 * 300.00540 * 10 9 6 36 36 H 1.08998 * 109.47015 * 59.99959 * 10 9 6 37 37 H 1.08990 * 109.47009 * 300.00280 * 11 10 9 38 38 H 1.09007 * 109.46800 * 60.00384 * 11 10 9 39 39 H 0.96997 * 120.00333 * 179.97438 * 15 14 12 40 40 H 1.09001 * 110.67587 * 67.18675 * 20 2 1 41 41 H 1.08997 * 110.47708 * 37.64092 * 21 20 2 42 42 H 1.09002 * 110.53308 * 274.97484 * 21 20 2 43 43 H 1.09002 * 110.03399 * 217.13605 * 22 21 20 44 44 H 1.08995 * 110.02943 * 95.75505 * 22 21 20 45 45 H 1.08999 * 110.03405 * 119.26051 * 23 22 21 46 46 H 1.09001 * 110.03705 * 240.64196 * 23 22 21 47 47 H 1.08997 * 110.48788 * 142.28685 * 24 23 22 48 48 H 1.09001 * 110.48482 * 264.93365 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6314 2.0576 1.3181 5 7 2.1569 3.4251 1.3184 6 16 1.6121 4.5213 2.4336 7 8 2.3100 5.7183 2.1182 8 8 0.1964 4.4502 2.3321 9 6 2.1700 3.8604 4.0280 10 6 1.7230 4.7964 5.1526 11 6 2.1941 4.2393 6.4975 12 6 1.7543 5.1616 7.6051 13 1 1.1951 6.0559 7.3731 14 6 2.0668 4.8642 8.9147 15 7 1.6826 5.6689 9.8814 16 14 3.0346 3.3178 9.3160 17 1 4.4875 3.6248 9.2997 18 1 2.6475 2.8271 10.6630 19 1 2.7384 2.2719 8.3042 20 6 1.9955 -0.7660 -1.1375 21 6 3.5225 -0.9884 -0.9956 22 6 3.8017 -2.2444 -1.8467 23 6 2.4763 -3.0211 -1.9338 24 6 1.4370 -2.2108 -1.1319 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.5740 0.8524 27 1 -0.3633 0.4512 -0.9234 28 1 3.0797 1.3445 -0.1083 29 1 1.5611 1.9273 -0.8310 30 1 0.5472 2.0846 1.4264 31 1 2.0657 1.5016 2.1492 32 1 2.8240 3.6883 0.6652 33 1 1.7368 2.8723 4.1834 34 1 3.2574 3.7847 4.0295 35 1 2.1565 5.7844 4.9970 36 1 0.6357 4.8726 5.1513 37 1 1.7609 3.2514 6.6533 38 1 3.2815 4.1636 6.4985 39 1 1.9021 5.4595 10.8028 40 1 1.7643 -0.2661 -2.0781 41 1 3.7866 -1.1674 0.0466 42 1 4.0716 -0.1322 -1.3876 43 1 4.5637 -2.8587 -1.3671 44 1 4.1304 -1.9538 -2.8445 45 1 2.1613 -3.1068 -2.9738 46 1 2.5952 -4.0128 -1.4971 47 1 0.4646 -2.2457 -1.6231 48 1 1.3640 -2.5876 -0.1118 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068915947.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:15 Heat of formation + Delta-G solvation = -92.298960 kcal Electronic energy + Delta-G solvation = -24778.572251 eV Core-core repulsion = 21187.668188 eV Total energy + Delta-G solvation = -3590.904063 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.49963 -37.04600 -36.66970 -35.80747 -34.80385 -34.58998 -32.20703 -29.70837 -28.93219 -28.37269 -27.79302 -25.15260 -23.60808 -22.11627 -20.60095 -20.47363 -20.26935 -19.26959 -17.55872 -16.97902 -16.82877 -16.43923 -16.04488 -15.90100 -15.51032 -14.97045 -14.78002 -14.35736 -14.18634 -14.15639 -13.70606 -13.50484 -12.91847 -12.61368 -12.60822 -12.33441 -12.20825 -12.13208 -12.00053 -11.91087 -11.83035 -11.76255 -11.57024 -11.35689 -11.22263 -11.11864 -11.08263 -10.97121 -10.93750 -10.80861 -10.08653 -9.91630 -9.80867 -9.38943 -9.24446 -8.75886 -8.58035 -6.07733 -4.06992 0.39033 2.72379 3.27491 3.35125 3.37330 3.51218 3.88810 4.07825 4.26339 4.33703 4.41149 4.45370 4.54210 4.73013 4.90450 4.92864 4.98838 5.07379 5.08622 5.10519 5.14140 5.20920 5.24232 5.25873 5.28149 5.32751 5.44472 5.53113 5.58308 5.63906 5.68095 5.73176 5.76621 5.79792 5.86271 5.94453 6.14839 6.27468 6.60950 6.67718 6.70129 6.83497 7.13602 7.27588 7.71809 8.48306 8.96706 9.53385 11.05537 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.014868 B = 0.002561 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1882.731347 B =10930.456237 C =12077.162694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.014 3.986 2 N -0.533 5.533 3 C 0.048 3.952 4 C 0.115 3.885 5 N -1.125 6.125 6 S 2.606 3.394 7 O -0.961 6.961 8 O -0.960 6.960 9 C -0.615 4.615 10 C -0.098 4.098 11 C -0.005 4.005 12 C -0.527 4.527 13 H 0.074 0.926 14 C 0.067 3.933 15 N -0.900 5.900 16 Si 0.881 3.119 17 H -0.277 1.277 18 H -0.287 1.287 19 H -0.265 1.265 20 C 0.077 3.923 21 C -0.117 4.117 22 C -0.124 4.124 23 C -0.124 4.124 24 C -0.117 4.117 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.027 0.973 28 H 0.083 0.917 29 H 0.042 0.958 30 H 0.081 0.919 31 H 0.075 0.925 32 H 0.414 0.586 33 H 0.127 0.873 34 H 0.129 0.871 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.020 0.980 38 H 0.016 0.984 39 H 0.264 0.736 40 H 0.048 0.952 41 H 0.079 0.921 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.061 0.939 45 H 0.061 0.939 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -17.283 -26.224 31.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 N -0.257 5.257 3 C -0.081 4.081 4 C -0.012 4.012 5 N -0.884 5.884 6 S 2.701 3.299 7 O -0.952 6.952 8 O -0.950 6.950 9 C -0.746 4.746 10 C -0.137 4.137 11 C -0.043 4.043 12 C -0.565 4.565 13 H 0.093 0.907 14 C -0.135 4.135 15 N -0.539 5.539 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.213 1.213 19 H -0.190 1.190 20 C -0.031 4.031 21 C -0.155 4.155 22 C -0.162 4.162 23 C -0.162 4.162 24 C -0.155 4.155 25 H 0.091 0.909 26 H 0.094 0.906 27 H 0.045 0.955 28 H 0.102 0.898 29 H 0.060 0.940 30 H 0.099 0.901 31 H 0.093 0.907 32 H 0.247 0.753 33 H 0.146 0.854 34 H 0.148 0.852 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.039 0.961 38 H 0.034 0.966 39 H 0.074 0.926 40 H 0.066 0.934 41 H 0.097 0.903 42 H 0.081 0.919 43 H 0.084 0.916 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 2.146 -16.765 -25.693 30.754 hybrid contribution 0.903 -0.796 -0.315 1.244 sum 3.049 -17.561 -26.008 31.529 Atomic orbital electron populations 1.22542 0.86987 1.02716 1.01112 1.61980 1.08170 1.12769 1.42800 1.22253 1.01019 0.88376 0.96470 1.21280 0.99793 0.81264 0.98816 1.55677 1.58384 1.24374 1.49962 1.05155 0.74717 0.73659 0.76386 1.93587 1.75120 1.43535 1.82921 1.93573 1.29464 1.86238 1.85746 1.30586 1.12420 1.12167 1.19444 1.21315 1.01473 0.96842 0.94082 1.19531 0.96203 0.96996 0.91593 1.21135 1.36168 1.09099 0.90075 0.90739 1.25032 0.95505 0.96599 0.96332 1.69911 1.46607 1.37396 0.99988 0.86769 0.80566 0.84108 0.77769 1.20239 1.21289 1.19008 1.22689 0.95236 0.93944 0.91280 1.22423 0.94426 0.97451 1.01198 1.22089 0.97566 0.96569 0.99975 1.22090 0.94954 0.99022 1.00127 1.22421 0.98018 0.93817 1.01214 0.90875 0.90576 0.95450 0.89847 0.93954 0.90082 0.90679 0.75275 0.85424 0.85233 0.90994 0.90953 0.96144 0.96609 0.92634 0.93395 0.90252 0.91904 0.91601 0.91984 0.91990 0.91612 0.91871 0.90320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.11 9.08 60.07 0.55 0.65 16 2 N -0.53 -4.13 4.66 -232.44 -1.08 -5.22 16 3 C 0.05 0.37 5.00 -3.83 -0.02 0.35 16 4 C 0.12 1.03 6.06 -4.04 -0.02 1.01 16 5 N -1.13 -11.04 5.89 -10.61 -0.06 -11.10 16 6 S 2.61 36.08 5.46 -107.50 -0.59 35.50 16 7 O -0.96 -16.25 18.08 -57.54 -1.04 -17.29 16 8 O -0.96 -16.25 17.50 -57.54 -1.01 -17.26 16 9 C -0.61 -8.71 6.07 37.16 0.23 -8.48 16 10 C -0.10 -1.89 5.16 -26.73 -0.14 -2.03 16 11 C 0.00 -0.11 4.04 -27.88 -0.11 -0.22 16 12 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 13 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 14 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 15 N -0.90 -27.76 13.96 55.43 0.77 -26.99 16 16 Si 0.88 21.46 27.47 -169.99 -4.67 16.79 16 17 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 18 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 19 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 20 C 0.08 0.53 2.58 -65.68 -0.17 0.36 16 21 C -0.12 -0.74 5.50 -25.03 -0.14 -0.88 16 22 C -0.12 -0.68 6.80 -25.61 -0.17 -0.86 16 23 C -0.12 -0.67 6.80 -25.62 -0.17 -0.84 16 24 C -0.12 -0.71 4.99 -25.07 -0.12 -0.84 16 25 H 0.07 0.48 6.93 -51.93 -0.36 0.12 16 26 H 0.08 0.59 6.30 -51.93 -0.33 0.26 16 27 H 0.03 0.20 8.14 -51.93 -0.42 -0.23 16 28 H 0.08 0.56 6.86 -51.93 -0.36 0.21 16 29 H 0.04 0.33 8.12 -51.92 -0.42 -0.09 16 30 H 0.08 0.79 6.03 -51.93 -0.31 0.47 16 31 H 0.07 0.62 8.14 -51.92 -0.42 0.19 16 32 H 0.41 3.26 8.62 -34.48 -0.30 2.96 16 33 H 0.13 1.56 8.14 -51.93 -0.42 1.14 16 34 H 0.13 1.59 8.14 -51.92 -0.42 1.16 16 35 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 36 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 37 H 0.02 0.47 7.20 -51.93 -0.37 0.09 16 38 H 0.02 0.36 7.57 -51.92 -0.39 -0.04 16 39 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 40 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 41 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.06 0.37 7.76 -51.93 -0.40 -0.03 16 43 H 0.07 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 45 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 46 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 47 H 0.06 0.36 7.97 -51.93 -0.41 -0.06 16 48 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 LS Contribution 386.47 15.07 5.82 5.82 Total: -1.00 -35.22 386.47 -11.33 -46.54 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -8.74 Total: -1.51 kcal Atomic # 6 Polarization: -24.55 SS G_CDS: -0.73 Total: -25.28 kcal Atomic # 7 Polarization: -42.93 SS G_CDS: -0.37 Total: -43.31 kcal Atomic # 8 Polarization: -32.50 SS G_CDS: -2.05 Total: -34.55 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.67 Total: 16.79 kcal Atomic # 16 Polarization: 36.08 SS G_CDS: -0.59 Total: 35.50 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -35.22 -11.33 -46.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068915947.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.758 kcal (2) G-P(sol) polarization free energy of solvation -35.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.325 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds