Wall clock time and date at job start Tue Mar 31 2020 12:27:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 120.00210 * 2 1 4 4 C 1.50697 * 109.47459 * 275.55039 * 3 2 1 5 5 H 1.08002 * 119.99663 * 4.70617 * 4 3 2 6 6 C 1.37880 * 120.00129 * 184.70516 * 4 3 2 7 7 N 1.31513 * 119.99397 * 0.02562 * 6 4 3 8 8 Si 1.86800 * 120.00001 * 179.97438 * 6 4 3 9 9 H 1.48498 * 109.47148 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46811 * 119.99938 * 8 6 4 11 11 H 1.48494 * 109.47033 * 239.99961 * 8 6 4 12 12 S 1.65602 * 119.99652 * 180.02562 * 2 1 3 13 13 O 1.42100 * 106.40172 * 159.50345 * 12 2 1 14 14 O 1.42095 * 106.40334 * 26.58160 * 12 2 1 15 15 N 1.65602 * 107.21560 * 273.04116 * 12 2 1 16 16 C 1.46495 * 119.99778 * 62.73669 * 15 12 2 17 17 C 1.52997 * 109.47173 * 164.36886 * 16 15 12 18 18 C 1.52988 * 109.46629 * 295.03714 * 17 16 15 19 19 C 1.53006 * 109.46436 * 195.97577 * 18 17 16 20 20 C 1.53011 * 109.47401 * 284.04433 * 19 18 17 21 21 C 1.53000 * 109.45355 * 75.94115 * 20 19 18 22 22 C 1.52980 * 109.51017 * 44.01245 * 21 20 19 23 23 C 1.53002 * 109.48841 * 247.06476 * 22 21 20 24 24 C 1.52990 * 109.46593 * 174.99711 * 17 16 15 25 25 H 1.08990 * 109.47121 * 269.99936 * 1 2 3 26 26 H 1.09009 * 109.46895 * 29.99635 * 1 2 3 27 27 H 1.08998 * 109.47073 * 149.99007 * 1 2 3 28 28 H 1.09001 * 109.46923 * 35.55233 * 3 2 1 29 29 H 1.08997 * 109.46765 * 155.54583 * 3 2 1 30 30 H 0.97004 * 119.99185 * 179.97438 * 7 6 4 31 31 H 0.97000 * 120.00005 * 242.73502 * 15 12 2 32 32 H 1.09000 * 109.47741 * 44.36497 * 16 15 12 33 33 H 1.09006 * 109.47306 * 284.36641 * 16 15 12 34 34 H 1.09003 * 109.46397 * 55.01347 * 17 16 15 35 35 H 1.09002 * 109.47245 * 75.97944 * 18 17 16 36 36 H 1.09002 * 109.47021 * 315.97658 * 18 17 16 37 37 H 1.09006 * 109.47644 * 164.04425 * 19 18 17 38 38 H 1.09004 * 109.47361 * 44.05000 * 19 18 17 39 39 H 1.08993 * 109.47594 * 195.93222 * 20 19 18 40 40 H 1.08994 * 109.47488 * 315.94221 * 20 19 18 41 41 H 1.09005 * 109.46552 * 164.02372 * 21 20 19 42 42 H 1.09002 * 109.46236 * 283.99674 * 21 20 19 43 43 H 1.09006 * 109.46579 * 7.06959 * 22 21 20 44 44 H 1.08999 * 109.47190 * 127.05863 * 22 21 20 45 45 H 1.08992 * 109.47925 * 195.94470 * 23 22 21 46 46 H 1.08998 * 109.47860 * 315.96620 * 23 22 21 47 47 H 1.08999 * 109.46667 * 112.94723 * 24 17 16 48 48 H 1.08993 * 109.46893 * 352.94737 * 24 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.3298 1.7725 -1.4141 5 1 1.8455 1.2452 -2.2227 6 6 3.0690 2.9067 -1.6756 7 7 3.6590 3.5485 -0.6910 8 14 3.2334 3.5308 -3.4286 9 1 2.4810 2.6367 -4.3450 10 1 2.6827 4.9070 -3.5177 11 1 4.6667 3.5451 -3.8165 12 16 2.2929 -1.4342 -0.0006 13 8 3.5994 -1.1431 -0.4778 14 8 1.4378 -2.3909 -0.6110 15 7 2.4653 -1.9013 1.5787 16 6 1.2808 -2.1948 2.3892 17 6 1.6995 -2.9607 3.6457 18 6 2.2658 -4.3247 3.2464 19 6 2.3122 -5.2367 4.4741 20 6 3.4867 -4.8308 5.3669 21 6 3.1296 -3.5533 6.1293 22 6 1.7033 -3.6638 6.6715 23 6 0.8062 -2.6503 5.9583 24 6 0.4825 -3.1581 4.5517 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8901 -0.5138 27 1 -0.3633 -0.8899 -0.5140 28 1 1.6552 2.0014 0.5975 29 1 3.1893 1.1155 0.4254 30 1 4.1793 4.3462 -0.8750 31 1 3.3506 -1.9807 1.9672 32 1 0.5847 -2.8009 1.8093 33 1 0.7970 -1.2614 2.6770 34 1 2.4617 -2.3933 4.1798 35 1 3.2731 -4.1979 2.8497 36 1 1.6288 -4.7735 2.4842 37 1 2.4397 -6.2709 4.1540 38 1 1.3812 -5.1415 5.0329 39 1 3.6970 -5.6308 6.0767 40 1 4.3672 -4.6517 4.7499 41 1 3.8241 -3.4191 6.9587 42 1 3.1974 -2.6981 5.4569 43 1 1.3249 -4.6709 6.4959 44 1 1.7046 -3.4578 7.7419 45 1 -0.1188 -2.5244 6.5209 46 1 1.3227 -1.6929 5.8892 47 1 0.2314 -4.2178 4.5968 48 1 -0.3636 -2.6010 4.1499 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000079283831.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:02 Heat of formation + Delta-G solvation = -91.683578 kcal Electronic energy + Delta-G solvation = -26424.009030 eV Core-core repulsion = 22833.131652 eV Total energy + Delta-G solvation = -3590.877378 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.82870 -36.57225 -35.61946 -35.40771 -35.10341 -33.12399 -32.42853 -32.27375 -27.76392 -27.64233 -26.10875 -25.05064 -24.02481 -22.27028 -22.13556 -20.36031 -19.59033 -18.74468 -17.20788 -16.75955 -16.54692 -16.15102 -15.58337 -15.40427 -14.78683 -14.37997 -14.33049 -14.20492 -13.91377 -13.68465 -13.37179 -13.24877 -12.78033 -12.69753 -12.27556 -12.14646 -11.98063 -11.86269 -11.57198 -11.42327 -11.32561 -11.16185 -11.11837 -11.09976 -11.05315 -10.92690 -10.77843 -10.67454 -10.52689 -10.47327 -10.12601 -10.01837 -9.87153 -9.72516 -9.20943 -8.43375 -8.03462 -6.05208 -4.09128 1.29814 3.31889 3.39506 3.44612 3.59025 4.18713 4.38547 4.46020 4.55801 4.57376 4.79119 4.90405 4.92438 4.95521 5.03139 5.07316 5.14012 5.29809 5.36114 5.46913 5.49882 5.56850 5.67111 5.67334 5.69526 5.76438 5.81042 5.83882 5.86618 5.92098 5.98533 6.02761 6.05556 6.12996 6.17713 6.21653 6.31578 6.35341 6.45819 6.58511 7.14592 7.30287 7.44702 7.65829 7.92724 8.22423 8.93758 9.56216 11.03480 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022839 B = 0.003217 C = 0.003149 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.664666 B = 8701.709360 C = 8889.096264 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.061 0.939 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 S 2.782 3.218 13 O -0.966 6.966 14 O -1.000 7.000 15 N -1.134 6.134 16 C 0.124 3.876 17 C -0.101 4.101 18 C -0.115 4.115 19 C -0.140 4.140 20 C -0.119 4.119 21 C -0.130 4.130 22 C -0.127 4.127 23 C -0.120 4.120 24 C -0.122 4.122 25 H 0.038 0.962 26 H 0.077 0.923 27 H 0.065 0.935 28 H 0.031 0.969 29 H 0.042 0.958 30 H 0.263 0.737 31 H 0.411 0.589 32 H 0.073 0.927 33 H 0.062 0.938 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.086 0.914 39 H 0.055 0.945 40 H 0.061 0.939 41 H 0.055 0.945 42 H 0.074 0.926 43 H 0.072 0.928 44 H 0.055 0.945 45 H 0.059 0.941 46 H 0.065 0.935 47 H 0.075 0.925 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.808 -14.883 15.812 22.478 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.839 5.839 3 C 0.135 3.865 4 C -0.570 4.570 5 H 0.079 0.921 6 C -0.140 4.140 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.208 1.208 12 S 2.790 3.210 13 O -0.950 6.950 14 O -0.983 6.983 15 N -0.893 5.893 16 C -0.002 4.002 17 C -0.120 4.120 18 C -0.152 4.152 19 C -0.177 4.177 20 C -0.156 4.156 21 C -0.168 4.168 22 C -0.164 4.164 23 C -0.158 4.158 24 C -0.160 4.160 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.083 0.917 28 H 0.049 0.951 29 H 0.060 0.940 30 H 0.072 0.928 31 H 0.244 0.756 32 H 0.091 0.909 33 H 0.080 0.920 34 H 0.106 0.894 35 H 0.082 0.918 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.080 0.920 41 H 0.074 0.926 42 H 0.093 0.907 43 H 0.090 0.910 44 H 0.074 0.926 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.093 0.907 48 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -5.579 -15.174 14.994 22.050 hybrid contribution 0.469 0.724 -0.418 0.959 sum -5.110 -14.450 14.576 21.151 Atomic orbital electron populations 1.21368 0.80378 1.03467 1.00060 1.57590 1.14176 1.23322 1.88790 1.19057 0.91208 0.78677 0.97593 1.21547 1.31685 1.10236 0.93485 0.92114 1.24942 0.95041 0.96553 0.97503 1.69932 1.33264 1.18945 1.31251 0.86457 0.78056 0.78451 0.84577 1.19635 1.20962 1.20783 1.01898 0.73317 0.72899 0.72899 1.93637 1.38768 1.84595 1.77987 1.93515 1.69016 1.61147 1.74616 1.56212 1.13972 1.85761 1.33315 1.21422 0.87206 0.99171 0.92431 1.21715 0.98394 0.96784 0.95156 1.21692 1.01549 0.94661 0.97330 1.22096 0.99931 0.98746 0.96906 1.21623 0.98260 0.97347 0.98395 1.21881 0.96345 0.98812 0.99719 1.21816 0.95413 1.00022 0.99155 1.21716 0.99490 0.98820 0.95729 1.21844 0.97408 1.02052 0.94710 0.94385 0.90453 0.91655 0.95061 0.93987 0.92758 0.75641 0.90876 0.92001 0.89407 0.91801 0.91722 0.92524 0.89616 0.92583 0.92017 0.92587 0.90724 0.91001 0.92635 0.92223 0.91603 0.90662 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.60 10.69 59.85 0.64 2.24 16 2 N -1.00 -20.70 3.23 -123.05 -0.40 -21.10 16 3 C 0.26 6.48 5.10 -5.19 -0.03 6.45 16 4 C -0.53 -15.05 9.38 -34.44 -0.32 -15.37 16 5 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 6 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 7 N -0.89 -26.34 13.29 55.43 0.74 -25.60 16 8 Si 0.90 22.03 29.54 -169.99 -5.02 17.01 16 9 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 10 H -0.28 -6.76 7.11 56.52 0.40 -6.35 16 11 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 12 S 2.78 55.38 6.09 -107.50 -0.65 54.73 16 13 O -0.97 -23.40 16.99 -57.17 -0.97 -24.37 16 14 O -1.00 -20.99 16.34 -57.17 -0.93 -21.92 16 15 N -1.13 -16.51 5.77 -10.61 -0.06 -16.58 16 16 C 0.12 1.48 5.33 -4.05 -0.02 1.46 16 17 C -0.10 -0.95 1.77 -90.63 -0.16 -1.11 16 18 C -0.11 -1.09 4.80 -26.73 -0.13 -1.21 16 19 C -0.14 -1.10 5.33 -26.72 -0.14 -1.25 16 20 C -0.12 -0.92 5.71 -26.73 -0.15 -1.07 16 21 C -0.13 -1.00 5.48 -26.74 -0.15 -1.15 16 22 C -0.13 -0.89 5.47 -26.74 -0.15 -1.04 16 23 C -0.12 -0.89 5.59 -26.72 -0.15 -1.04 16 24 C -0.12 -0.97 5.13 -26.73 -0.14 -1.10 16 25 H 0.04 0.52 8.06 -51.93 -0.42 0.11 16 26 H 0.08 1.35 8.07 -51.92 -0.42 0.93 16 27 H 0.06 1.06 7.05 -51.93 -0.37 0.69 16 28 H 0.03 0.79 8.11 -51.93 -0.42 0.37 16 29 H 0.04 1.14 7.50 -51.93 -0.39 0.75 16 30 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 31 H 0.41 5.34 8.61 -34.47 -0.30 5.04 16 32 H 0.07 0.89 7.71 -51.93 -0.40 0.48 16 33 H 0.06 0.70 8.03 -51.93 -0.42 0.29 16 34 H 0.09 0.83 4.69 -51.93 -0.24 0.58 16 35 H 0.06 0.64 7.77 -51.93 -0.40 0.24 16 36 H 0.06 0.66 7.98 -51.93 -0.41 0.24 16 37 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 38 H 0.09 0.62 2.83 -51.93 -0.15 0.48 16 39 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 40 H 0.06 0.51 7.82 -51.93 -0.41 0.10 16 41 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 42 H 0.07 0.63 4.69 -51.93 -0.24 0.38 16 43 H 0.07 0.49 5.47 -51.93 -0.28 0.20 16 44 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 46 H 0.07 0.53 7.47 -51.93 -0.39 0.14 16 47 H 0.08 0.55 5.47 -51.93 -0.28 0.27 16 48 H 0.06 0.51 7.59 -51.93 -0.39 0.11 16 LS Contribution 369.58 15.07 5.57 5.57 Total: -1.00 -33.54 369.58 -10.72 -44.26 By element: Atomic # 1 Polarization: 8.52 SS G_CDS: -8.00 Total: 0.53 kcal Atomic # 6 Polarization: -11.52 SS G_CDS: -0.99 Total: -12.51 kcal Atomic # 7 Polarization: -63.56 SS G_CDS: 0.28 Total: -63.28 kcal Atomic # 8 Polarization: -44.39 SS G_CDS: -1.91 Total: -46.30 kcal Atomic # 14 Polarization: 22.03 SS G_CDS: -5.02 Total: 17.01 kcal Atomic # 16 Polarization: 55.38 SS G_CDS: -0.65 Total: 54.73 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.54 -10.72 -44.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000079283831.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.427 kcal (2) G-P(sol) polarization free energy of solvation -33.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds