Wall clock time and date at job start Tue Mar 31 2020 12:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00050 * 2 1 4 4 C 1.50698 * 109.47569 * 275.88347 * 3 2 1 5 5 H 1.07997 * 119.99921 * 4.93264 * 4 3 2 6 6 C 1.37875 * 120.00036 * 184.92841 * 4 3 2 7 7 N 1.31513 * 119.99965 * 5.14644 * 6 4 3 8 8 Si 1.86803 * 119.99859 * 185.14579 * 6 4 3 9 9 H 1.48502 * 109.47018 * 94.99591 * 8 6 4 10 10 H 1.48502 * 109.46765 * 214.99127 * 8 6 4 11 11 H 1.48500 * 109.47304 * 334.99206 * 8 6 4 12 12 S 1.65604 * 120.00287 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.39864 * 341.34008 * 12 2 1 14 14 O 1.42094 * 106.40144 * 208.41774 * 12 2 1 15 15 N 1.65603 * 107.21599 * 94.87898 * 12 2 1 16 16 C 1.46492 * 120.00341 * 85.74523 * 15 12 2 17 17 C 1.46507 * 119.99784 * 265.74149 * 15 12 2 18 18 C 1.53000 * 109.47479 * 263.02530 * 17 15 12 19 19 C 1.52998 * 109.47074 * 183.39439 * 18 17 15 20 20 C 1.53002 * 109.47069 * 65.76826 * 19 18 17 21 21 C 1.52994 * 109.47215 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47360 * 300.00085 * 21 20 19 23 23 C 1.53002 * 109.47026 * 59.99799 * 22 21 20 24 24 C 1.52998 * 109.47069 * 299.99964 * 23 22 21 25 25 H 1.09004 * 109.46937 * 269.99329 * 1 2 3 26 26 H 1.08999 * 109.47503 * 29.99532 * 1 2 3 27 27 H 1.09002 * 109.47392 * 149.99534 * 1 2 3 28 28 H 1.09005 * 109.46775 * 35.88798 * 3 2 1 29 29 H 1.09003 * 109.46981 * 155.87717 * 3 2 1 30 30 H 0.96995 * 119.99859 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47387 * 270.00178 * 16 15 12 32 32 H 1.09005 * 109.47075 * 30.00139 * 16 15 12 33 33 H 1.09001 * 109.47513 * 149.99262 * 16 15 12 34 34 H 1.08999 * 109.47039 * 143.02120 * 17 15 12 35 35 H 1.09005 * 109.47160 * 23.02682 * 17 15 12 36 36 H 1.08994 * 109.46832 * 63.39823 * 18 17 15 37 37 H 1.08997 * 109.46642 * 303.39757 * 18 17 15 38 38 H 1.08992 * 109.47213 * 305.76972 * 19 18 17 39 39 H 1.09008 * 109.47055 * 299.99982 * 20 19 18 40 40 H 1.09003 * 109.47392 * 59.99725 * 20 19 18 41 41 H 1.09007 * 109.47172 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47444 * 60.00277 * 21 20 19 43 43 H 1.09003 * 109.46841 * 299.99700 * 22 21 20 44 44 H 1.08998 * 109.47099 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.46718 * 180.02562 * 23 22 21 46 46 H 1.08991 * 109.46745 * 60.00452 * 23 22 21 47 47 H 1.09003 * 109.47238 * 300.00369 * 24 23 22 48 48 H 1.08998 * 109.47178 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3226 1.7767 -1.4133 5 1 1.8313 1.2538 -2.2205 6 6 3.0642 2.9090 -1.6758 7 7 3.7447 3.4877 -0.7106 8 14 3.1023 3.6210 -3.4024 9 1 2.0811 4.6928 -3.5184 10 1 4.4477 4.1876 -3.6744 11 1 2.8085 2.5486 -4.3867 12 16 2.2931 -1.4341 -0.0006 13 8 1.3752 -2.4276 0.4351 14 8 3.5319 -1.1824 0.6482 15 7 2.6547 -1.7906 -1.5769 16 6 3.8633 -1.2390 -2.1940 17 6 1.7658 -2.6578 -2.3543 18 6 2.3044 -4.0897 -2.3342 19 6 1.4237 -4.9783 -3.2149 20 6 1.5508 -4.5361 -4.6741 21 6 0.6706 -5.4251 -5.5549 22 6 1.1216 -6.8811 -5.4220 23 6 0.9944 -7.3232 -3.9628 24 6 1.8747 -6.4343 -3.0820 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6581 1.9997 0.6025 29 1 3.1914 1.1144 0.4200 30 1 4.2667 4.2841 -0.8954 31 1 3.6302 -0.2794 -2.6554 32 1 4.6292 -1.0988 -1.4311 33 1 4.2301 -1.9283 -2.9545 34 1 1.7193 -2.3015 -3.3833 35 1 0.7670 -2.6391 -1.9179 36 1 2.2942 -4.4674 -1.3118 37 1 3.3257 -4.0990 -2.7148 38 1 0.3849 -4.8889 -2.8974 39 1 1.2299 -3.4987 -4.7687 40 1 2.5897 -4.6255 -4.9916 41 1 0.7616 -5.1104 -6.5945 42 1 -0.3684 -5.3361 -5.2375 43 1 2.1606 -6.9700 -5.7395 44 1 0.4948 -7.5143 -6.0499 45 1 1.3161 -8.3603 -3.8681 46 1 -0.0445 -7.2343 -3.6455 47 1 2.9137 -6.5232 -3.3995 48 1 1.7838 -6.7490 -2.0424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000101581160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:57 Heat of formation + Delta-G solvation = -107.982931 kcal Electronic energy + Delta-G solvation = -26538.257246 eV Core-core repulsion = 22946.673075 eV Total energy + Delta-G solvation = -3591.584171 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.02615 -36.66983 -36.15411 -35.44794 -35.15709 -32.71600 -32.49172 -30.90078 -28.39445 -27.74951 -25.53020 -25.04768 -23.31797 -22.46853 -22.19673 -20.77624 -19.84652 -18.25716 -17.20103 -16.76382 -16.40493 -15.89730 -15.45482 -14.87190 -14.74061 -14.37932 -14.24249 -14.02674 -13.71027 -13.52532 -13.24200 -13.09616 -12.63137 -12.31645 -12.26302 -12.19496 -12.12002 -11.97343 -11.75260 -11.63487 -11.43612 -11.24795 -11.15272 -11.12295 -11.11355 -11.01807 -10.78220 -10.61066 -10.52256 -10.50779 -10.19859 -10.10328 -10.01110 -9.78133 -8.56554 -8.49254 -8.00868 -6.12964 -4.19152 1.32320 3.22556 3.30524 3.31699 3.53388 4.13921 4.34250 4.53404 4.57610 4.63224 4.94639 5.00562 5.04971 5.12599 5.20292 5.28877 5.31004 5.36622 5.39233 5.52357 5.58583 5.61908 5.63753 5.72547 5.82668 5.87981 5.89542 6.00756 6.02715 6.04642 6.08729 6.13218 6.16409 6.22309 6.26131 6.34137 6.43708 6.51044 6.55376 6.59668 7.02055 7.32918 7.44279 7.65651 7.84694 8.14589 8.86131 9.46250 10.94842 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.003938 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.875236 B = 7109.106856 C = 8143.802223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.107 3.893 2 N -0.999 5.999 3 C 0.243 3.757 4 C -0.538 4.538 5 H 0.063 0.937 6 C 0.064 3.936 7 N -0.888 5.888 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.285 1.285 11 H -0.273 1.273 12 S 2.786 3.214 13 O -0.999 6.999 14 O -0.980 6.980 15 N -1.006 6.006 16 C 0.089 3.911 17 C 0.128 3.872 18 C -0.135 4.135 19 C -0.084 4.084 20 C -0.118 4.118 21 C -0.120 4.120 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.115 4.115 25 H 0.043 0.957 26 H 0.072 0.928 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.054 0.946 30 H 0.265 0.735 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.076 0.924 36 H 0.067 0.933 37 H 0.066 0.934 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.061 0.939 41 H 0.059 0.941 42 H 0.061 0.939 43 H 0.059 0.941 44 H 0.057 0.943 45 H 0.058 0.942 46 H 0.061 0.939 47 H 0.061 0.939 48 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.219 -16.489 -8.012 19.061 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.040 4.040 2 N -0.841 5.841 3 C 0.121 3.879 4 C -0.577 4.577 5 H 0.081 0.919 6 C -0.139 4.139 7 N -0.526 5.526 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.211 1.211 11 H -0.198 1.198 12 S 2.795 3.205 13 O -0.983 6.983 14 O -0.964 6.964 15 N -0.844 5.844 16 C -0.056 4.056 17 C 0.002 3.998 18 C -0.175 4.175 19 C -0.103 4.103 20 C -0.155 4.155 21 C -0.157 4.157 22 C -0.157 4.157 23 C -0.157 4.157 24 C -0.152 4.152 25 H 0.061 0.939 26 H 0.091 0.909 27 H 0.071 0.929 28 H 0.050 0.950 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.090 0.910 32 H 0.095 0.905 33 H 0.077 0.923 34 H 0.093 0.907 35 H 0.094 0.906 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.078 0.922 44 H 0.076 0.924 45 H 0.077 0.923 46 H 0.080 0.920 47 H 0.079 0.921 48 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.850 -16.816 -7.204 18.926 hybrid contribution -0.041 0.859 -1.373 1.620 sum -4.891 -15.957 -8.577 18.764 Atomic orbital electron populations 1.21210 0.80247 1.02026 1.00534 1.57700 1.14098 1.23580 1.88677 1.19219 0.92261 0.79004 0.97429 1.21546 1.31730 1.10920 0.93547 0.91866 1.24968 0.94873 0.96881 0.97180 1.69947 1.29706 1.20652 1.32270 0.86576 0.77452 0.79438 0.84477 1.20685 1.21118 1.19775 1.01752 0.73021 0.72633 0.73099 1.93519 1.65287 1.59012 1.80504 1.93557 1.44337 1.85689 1.72809 1.57775 1.33249 1.60928 1.32415 1.21543 0.85877 0.99082 0.99090 1.21224 0.92730 0.88850 0.97042 1.22091 0.99811 0.95123 1.00441 1.21107 1.00027 0.94340 0.94854 1.21674 1.00087 0.99324 0.94452 1.21538 0.99747 0.94960 0.99495 1.21537 1.01232 0.96378 0.96542 1.21532 1.00229 0.98800 0.95120 1.21585 0.99472 0.94498 0.99657 0.93880 0.90927 0.92859 0.94955 0.92801 0.92565 0.91045 0.90478 0.92266 0.90707 0.90577 0.91404 0.91526 0.90938 0.91513 0.91986 0.92263 0.92047 0.92183 0.92449 0.92336 0.92043 0.92054 0.91927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.11 1.87 10.32 59.84 0.62 2.49 16 2 N -1.00 -21.10 3.23 -123.05 -0.40 -21.50 16 3 C 0.24 6.05 5.44 -5.19 -0.03 6.03 16 4 C -0.54 -13.81 8.65 -34.44 -0.30 -14.11 16 5 H 0.06 1.57 7.82 -52.49 -0.41 1.16 16 6 C 0.06 1.71 5.45 -17.82 -0.10 1.61 16 7 N -0.89 -25.08 13.29 55.43 0.74 -24.34 16 8 Si 0.89 20.27 29.54 -169.99 -5.02 15.25 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 12 S 2.79 57.20 6.04 -107.50 -0.65 56.55 16 13 O -1.00 -20.61 15.84 -57.17 -0.91 -21.51 16 14 O -0.98 -23.31 15.48 -57.17 -0.89 -24.20 16 15 N -1.01 -17.41 3.24 -121.75 -0.40 -17.81 16 16 C 0.09 1.51 10.70 59.84 0.64 2.15 16 17 C 0.13 1.80 5.22 -4.04 -0.02 1.78 16 18 C -0.14 -1.68 4.98 -26.73 -0.13 -1.81 16 19 C -0.08 -0.86 2.18 -90.62 -0.20 -1.06 16 20 C -0.12 -1.11 4.98 -26.73 -0.13 -1.24 16 21 C -0.12 -1.00 5.92 -26.73 -0.16 -1.16 16 22 C -0.12 -0.94 5.92 -26.73 -0.16 -1.10 16 23 C -0.12 -0.98 5.92 -26.73 -0.16 -1.13 16 24 C -0.11 -1.07 5.20 -26.73 -0.14 -1.21 16 25 H 0.04 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.07 1.24 8.07 -51.93 -0.42 0.82 16 27 H 0.05 0.82 7.66 -51.93 -0.40 0.42 16 28 H 0.03 0.83 8.12 -51.93 -0.42 0.41 16 29 H 0.05 1.49 6.96 -51.93 -0.36 1.12 16 30 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.07 1.32 7.41 -51.93 -0.38 0.94 16 32 H 0.08 1.41 7.06 -51.93 -0.37 1.04 16 33 H 0.06 0.80 7.94 -51.93 -0.41 0.39 16 34 H 0.07 0.94 6.42 -51.93 -0.33 0.61 16 35 H 0.08 1.07 7.42 -51.93 -0.39 0.69 16 36 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 37 H 0.07 0.80 8.00 -51.93 -0.42 0.38 16 38 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.07 0.64 6.52 -51.92 -0.34 0.30 16 40 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 43 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 44 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 45 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 46 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 47 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 48 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 384.27 15.07 5.79 5.79 Total: -1.00 -30.47 384.27 -10.85 -41.31 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -8.85 Total: -0.78 kcal Atomic # 6 Polarization: -8.50 SS G_CDS: -0.26 Total: -8.77 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: -0.06 Total: -63.65 kcal Atomic # 8 Polarization: -43.92 SS G_CDS: -1.79 Total: -45.71 kcal Atomic # 14 Polarization: 20.27 SS G_CDS: -5.02 Total: 15.25 kcal Atomic # 16 Polarization: 57.20 SS G_CDS: -0.65 Total: 56.55 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -30.47 -10.85 -41.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101581160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.671 kcal (2) G-P(sol) polarization free energy of solvation -30.467 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.983 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds