Wall clock time and date at job start Tue Mar 31 2020 12:25:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46502 * 120.00050 * 2 1 4 4 C 1.50698 * 109.47569 * 275.88347 * 3 2 1 5 5 H 1.07997 * 119.99921 * 4.93264 * 4 3 2 6 6 C 1.37875 * 120.00036 * 184.92841 * 4 3 2 7 7 N 1.31513 * 119.99965 * 5.14644 * 6 4 3 8 8 Si 1.86803 * 119.99859 * 185.14579 * 6 4 3 9 9 H 1.48502 * 109.47018 * 94.99591 * 8 6 4 10 10 H 1.48502 * 109.46765 * 214.99127 * 8 6 4 11 11 H 1.48500 * 109.47304 * 334.99206 * 8 6 4 12 12 S 1.65604 * 120.00287 * 180.02562 * 2 1 3 13 13 O 1.42101 * 106.39864 * 341.34008 * 12 2 1 14 14 O 1.42094 * 106.40144 * 208.41774 * 12 2 1 15 15 N 1.65603 * 107.21599 * 94.87898 * 12 2 1 16 16 C 1.46492 * 120.00341 * 85.74523 * 15 12 2 17 17 C 1.46507 * 119.99784 * 265.74149 * 15 12 2 18 18 C 1.53000 * 109.47479 * 263.02530 * 17 15 12 19 19 C 1.52998 * 109.47074 * 183.39439 * 18 17 15 20 20 C 1.53002 * 109.47069 * 65.76826 * 19 18 17 21 21 C 1.52994 * 109.47215 * 179.97438 * 20 19 18 22 22 C 1.53000 * 109.47360 * 300.00085 * 21 20 19 23 23 C 1.53002 * 109.47026 * 59.99799 * 22 21 20 24 24 C 1.52998 * 109.47069 * 299.99964 * 23 22 21 25 25 H 1.09004 * 109.46937 * 269.99329 * 1 2 3 26 26 H 1.08999 * 109.47503 * 29.99532 * 1 2 3 27 27 H 1.09002 * 109.47392 * 149.99534 * 1 2 3 28 28 H 1.09005 * 109.46775 * 35.88798 * 3 2 1 29 29 H 1.09003 * 109.46981 * 155.87717 * 3 2 1 30 30 H 0.96995 * 119.99859 * 179.97438 * 7 6 4 31 31 H 1.08999 * 109.47387 * 270.00178 * 16 15 12 32 32 H 1.09005 * 109.47075 * 30.00139 * 16 15 12 33 33 H 1.09001 * 109.47513 * 149.99262 * 16 15 12 34 34 H 1.08999 * 109.47039 * 143.02120 * 17 15 12 35 35 H 1.09005 * 109.47160 * 23.02682 * 17 15 12 36 36 H 1.08994 * 109.46832 * 63.39823 * 18 17 15 37 37 H 1.08997 * 109.46642 * 303.39757 * 18 17 15 38 38 H 1.08992 * 109.47213 * 305.76972 * 19 18 17 39 39 H 1.09008 * 109.47055 * 299.99982 * 20 19 18 40 40 H 1.09003 * 109.47392 * 59.99725 * 20 19 18 41 41 H 1.09007 * 109.47172 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47444 * 60.00277 * 21 20 19 43 43 H 1.09003 * 109.46841 * 299.99700 * 22 21 20 44 44 H 1.08998 * 109.47099 * 180.02562 * 22 21 20 45 45 H 1.09000 * 109.46718 * 180.02562 * 23 22 21 46 46 H 1.08991 * 109.46745 * 60.00452 * 23 22 21 47 47 H 1.09003 * 109.47238 * 300.00369 * 24 23 22 48 48 H 1.08998 * 109.47178 * 179.97438 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.3226 1.7767 -1.4133 5 1 1.8313 1.2538 -2.2205 6 6 3.0642 2.9090 -1.6758 7 7 3.7447 3.4877 -0.7106 8 14 3.1023 3.6210 -3.4024 9 1 2.0811 4.6928 -3.5184 10 1 4.4477 4.1876 -3.6744 11 1 2.8085 2.5486 -4.3867 12 16 2.2931 -1.4341 -0.0006 13 8 1.3752 -2.4276 0.4351 14 8 3.5319 -1.1824 0.6482 15 7 2.6547 -1.7906 -1.5769 16 6 3.8633 -1.2390 -2.1940 17 6 1.7658 -2.6578 -2.3543 18 6 2.3044 -4.0897 -2.3342 19 6 1.4237 -4.9783 -3.2149 20 6 1.5508 -4.5361 -4.6741 21 6 0.6706 -5.4251 -5.5549 22 6 1.1216 -6.8811 -5.4220 23 6 0.9944 -7.3232 -3.9628 24 6 1.8747 -6.4343 -3.0820 25 1 -0.3633 -0.0001 1.0277 26 1 -0.3634 0.8900 -0.5137 27 1 -0.3634 -0.8899 -0.5139 28 1 1.6581 1.9997 0.6025 29 1 3.1914 1.1144 0.4200 30 1 4.2667 4.2841 -0.8954 31 1 3.6302 -0.2794 -2.6554 32 1 4.6292 -1.0988 -1.4311 33 1 4.2301 -1.9283 -2.9545 34 1 1.7193 -2.3015 -3.3833 35 1 0.7670 -2.6391 -1.9179 36 1 2.2942 -4.4674 -1.3118 37 1 3.3257 -4.0990 -2.7148 38 1 0.3849 -4.8889 -2.8974 39 1 1.2299 -3.4987 -4.7687 40 1 2.5897 -4.6255 -4.9916 41 1 0.7616 -5.1104 -6.5945 42 1 -0.3684 -5.3361 -5.2375 43 1 2.1606 -6.9700 -5.7395 44 1 0.4948 -7.5143 -6.0499 45 1 1.3161 -8.3603 -3.8681 46 1 -0.0445 -7.2343 -3.6455 47 1 2.9137 -6.5232 -3.3995 48 1 1.7838 -6.7490 -2.0424 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101581160.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:57 Heat of formation + Delta-G solvation = -125.981882 kcal Electronic energy + Delta-G solvation = -26539.037739 eV Core-core repulsion = 22946.673075 eV Total energy + Delta-G solvation = -3592.364664 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.81422 -38.36475 -37.39121 -37.18803 -36.88515 -34.47230 -33.64851 -31.58095 -29.71135 -29.32159 -26.87001 -26.63899 -24.34761 -24.09049 -23.19290 -21.63139 -20.58383 -19.82862 -18.82488 -18.51416 -18.21143 -17.38830 -16.60876 -16.31558 -15.84062 -15.58820 -15.17318 -15.11472 -14.97443 -14.81619 -14.67098 -14.25626 -14.05058 -13.95680 -13.67070 -13.50241 -13.40106 -13.08807 -12.99322 -12.93789 -12.90229 -12.88151 -12.56706 -12.48137 -12.42563 -12.35592 -11.96210 -11.92748 -11.85152 -11.70023 -11.56402 -11.25796 -10.96441 -10.77954 -10.57237 -9.92024 -9.71856 -8.15307 -6.28899 -0.30103 1.45159 1.46350 1.56805 1.98096 2.44009 2.55096 3.16224 3.38772 3.74298 3.80051 3.86553 3.96487 4.12688 4.21802 4.28365 4.44731 4.51739 4.56706 4.61599 4.67500 4.71603 4.72072 4.74606 4.77235 4.81015 4.86294 4.90248 5.03696 5.09995 5.13020 5.17465 5.21507 5.26740 5.27069 5.32978 5.40368 5.40583 5.46336 5.47538 5.57148 5.66778 5.68251 5.77658 5.98605 6.11509 6.83095 7.40924 8.93062 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015450 B = 0.003938 C = 0.003437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1811.875236 B = 7109.106856 C = 8143.802223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -1.006 6.006 3 C 0.257 3.743 4 C -0.536 4.536 5 H 0.073 0.927 6 C 0.012 3.988 7 N -0.929 5.929 8 Si 0.960 3.040 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.257 1.257 12 S 2.794 3.206 13 O -1.001 7.001 14 O -1.019 7.019 15 N -1.001 6.001 16 C 0.091 3.909 17 C 0.120 3.880 18 C -0.132 4.132 19 C -0.080 4.080 20 C -0.117 4.117 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.118 4.118 24 C -0.115 4.115 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.016 0.984 29 H 0.019 0.981 30 H 0.265 0.735 31 H 0.056 0.944 32 H 0.056 0.944 33 H 0.099 0.901 34 H 0.096 0.904 35 H 0.077 0.923 36 H 0.049 0.951 37 H 0.072 0.928 38 H 0.070 0.930 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.066 0.934 42 H 0.061 0.939 43 H 0.060 0.940 44 H 0.066 0.934 45 H 0.066 0.934 46 H 0.060 0.940 47 H 0.062 0.938 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.256 -17.698 -10.618 21.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.048 4.048 2 N -0.847 5.847 3 C 0.133 3.867 4 C -0.575 4.575 5 H 0.091 0.909 6 C -0.188 4.188 7 N -0.569 5.569 8 Si 0.785 3.215 9 H -0.203 1.203 10 H -0.213 1.213 11 H -0.181 1.181 12 S 2.803 3.197 13 O -0.985 6.985 14 O -1.003 7.003 15 N -0.841 5.841 16 C -0.055 4.055 17 C -0.005 4.005 18 C -0.171 4.171 19 C -0.099 4.099 20 C -0.154 4.154 21 C -0.157 4.157 22 C -0.156 4.156 23 C -0.155 4.155 24 C -0.153 4.153 25 H 0.073 0.927 26 H 0.094 0.906 27 H 0.095 0.905 28 H 0.034 0.966 29 H 0.037 0.963 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.075 0.925 33 H 0.117 0.883 34 H 0.115 0.885 35 H 0.095 0.905 36 H 0.068 0.932 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.084 0.916 40 H 0.081 0.919 41 H 0.084 0.916 42 H 0.080 0.920 43 H 0.079 0.921 44 H 0.085 0.915 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.081 0.919 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.924 -18.052 -9.807 21.381 hybrid contribution 0.251 1.160 -0.527 1.298 sum -5.674 -16.892 -10.334 20.599 Atomic orbital electron populations 1.21460 0.78096 1.03372 1.01844 1.57634 1.15608 1.22262 1.89212 1.18796 0.90769 0.80173 0.96971 1.21762 1.31166 1.10769 0.93818 0.90891 1.25826 0.94485 0.97329 1.01134 1.70087 1.30850 1.21295 1.34659 0.85508 0.77208 0.78896 0.79857 1.20340 1.21298 1.18050 1.01336 0.72202 0.72353 0.73794 1.93507 1.65163 1.58721 1.81106 1.93505 1.46166 1.86152 1.74461 1.57569 1.33828 1.61155 1.31559 1.21556 0.85209 0.99503 0.99195 1.21538 0.92155 0.89193 0.97579 1.22056 1.00654 0.94351 1.00036 1.21069 0.99327 0.94419 0.95071 1.21661 1.00459 0.99483 0.93803 1.21535 0.99479 0.95028 0.99620 1.21536 1.01493 0.96233 0.96318 1.21522 0.99889 0.98963 0.95145 1.21582 0.99858 0.94149 0.99674 0.92697 0.90557 0.90497 0.96588 0.96301 0.92563 0.92564 0.92502 0.88299 0.88549 0.90495 0.93174 0.90909 0.91151 0.91605 0.91853 0.91575 0.92047 0.92115 0.91496 0.91561 0.92095 0.91919 0.92547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.31 10.32 127.77 1.32 4.63 16 2 N -1.01 -42.56 3.23 -543.21 -1.75 -44.31 16 3 C 0.26 13.10 5.44 85.63 0.47 13.56 16 4 C -0.54 -27.47 8.65 25.60 0.22 -27.25 16 5 H 0.07 3.53 7.82 -2.91 -0.02 3.51 16 6 C 0.01 0.62 5.45 84.65 0.46 1.09 16 7 N -0.93 -53.49 13.29 21.45 0.28 -53.21 16 8 Si 0.96 41.02 29.54 68.60 2.03 43.05 16 9 H -0.28 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.27 7.11 99.48 0.71 -11.57 16 11 H -0.26 -10.20 7.11 99.48 0.71 -9.50 16 12 S 2.79 114.97 6.04 -56.49 -0.34 114.63 16 13 O -1.00 -40.65 15.84 -128.00 -2.03 -42.68 16 14 O -1.02 -49.97 15.48 -128.00 -1.98 -51.95 16 15 N -1.00 -33.62 3.24 -539.12 -1.75 -35.37 16 16 C 0.09 2.98 10.70 127.77 1.37 4.35 16 17 C 0.12 3.14 5.22 86.38 0.45 3.59 16 18 C -0.13 -3.04 4.98 30.59 0.15 -2.89 16 19 C -0.08 -1.47 2.18 -10.79 -0.02 -1.49 16 20 C -0.12 -1.88 4.98 30.59 0.15 -1.73 16 21 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 22 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 23 C -0.12 -1.67 5.92 30.59 0.18 -1.49 16 24 C -0.12 -1.95 5.20 30.59 0.16 -1.79 16 25 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 26 H 0.08 2.52 8.07 -2.39 -0.02 2.50 16 27 H 0.08 2.22 7.66 -2.39 -0.02 2.20 16 28 H 0.02 0.86 8.12 -2.38 -0.02 0.84 16 29 H 0.02 1.09 6.96 -2.39 -0.02 1.08 16 30 H 0.27 14.44 8.31 -92.71 -0.77 13.67 16 31 H 0.06 2.02 7.41 -2.39 -0.02 2.00 16 32 H 0.06 2.10 7.06 -2.38 -0.02 2.08 16 33 H 0.10 2.43 7.94 -2.39 -0.02 2.41 16 34 H 0.10 2.13 6.42 -2.39 -0.02 2.12 16 35 H 0.08 2.01 7.42 -2.38 -0.02 1.99 16 36 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 37 H 0.07 1.58 8.00 -2.39 -0.02 1.56 16 38 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.07 1.07 6.52 -2.38 -0.02 1.06 16 40 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 42 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 43 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 44 H 0.07 0.76 8.14 -2.39 -0.02 0.74 16 45 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 46 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 47 H 0.06 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 Total: -1.00 -65.57 384.27 0.63 -64.94 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.90 Total: 17.20 kcal Atomic # 6 Polarization: -17.56 SS G_CDS: 5.27 Total: -12.29 kcal Atomic # 7 Polarization: -129.68 SS G_CDS: -3.22 Total: -132.90 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -4.01 Total: -94.64 kcal Atomic # 14 Polarization: 41.02 SS G_CDS: 2.03 Total: 43.05 kcal Atomic # 16 Polarization: 114.97 SS G_CDS: -0.34 Total: 114.63 kcal Total: -65.57 0.63 -64.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101581160.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.038 kcal (2) G-P(sol) polarization free energy of solvation -65.571 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds