Wall clock time and date at job start Tue Mar 31 2020 11:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46494 * 109.52333 * 177.56080 * 6 5 4 8 8 C 1.46503 * 119.99860 * 300.31617 * 7 6 5 9 9 S 1.65602 * 120.00216 * 120.32080 * 7 6 5 10 10 O 1.42101 * 104.27737 * 206.06908 * 9 7 6 11 11 O 1.42098 * 104.27443 * 333.92777 * 9 7 6 12 12 C 1.81399 * 104.45029 * 89.99772 * 9 7 6 13 13 C 1.52991 * 109.47121 * 180.02562 * 12 9 7 14 14 C 1.53002 * 109.47068 * 179.97438 * 13 12 9 15 15 C 1.50707 * 109.47075 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99908 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00086 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46998 * 90.00106 * 19 17 15 21 21 H 1.48498 * 109.46994 * 209.99887 * 19 17 15 22 22 H 1.48494 * 109.47276 * 329.99906 * 19 17 15 23 23 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 24 24 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 25 25 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 26 26 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 27 27 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 29 29 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 30 30 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 31 31 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 32 32 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 33 33 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 34 34 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 35 35 H 1.09000 * 109.47136 * 90.00832 * 8 7 6 36 36 H 1.09003 * 109.47463 * 209.99925 * 8 7 6 37 37 H 1.08995 * 109.47537 * 329.99987 * 8 7 6 38 38 H 1.09000 * 109.47008 * 300.00397 * 12 9 7 39 39 H 1.08998 * 109.47299 * 59.99896 * 12 9 7 40 40 H 1.09000 * 109.47182 * 299.99896 * 13 12 9 41 41 H 1.08996 * 109.47821 * 59.99962 * 13 12 9 42 42 H 1.08996 * 109.47465 * 299.99387 * 14 13 12 43 43 H 1.09001 * 109.47075 * 60.00254 * 14 13 12 44 44 H 0.97002 * 120.00322 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.50062 * 182.40805 * 23 6 5 46 46 H 1.09002 * 109.53946 * 62.30558 * 23 6 5 47 47 H 1.08998 * 109.45759 * 294.17597 * 24 3 2 48 48 H 1.09003 * 109.46299 * 54.15067 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6649 5.1549 0.9128 8 6 3.4577 5.8255 -0.3732 9 16 4.3849 5.9670 2.1636 10 8 4.1032 7.3350 1.9015 11 8 3.8864 5.3268 3.3301 12 6 6.1561 5.6317 1.9611 13 6 6.9386 6.3361 3.0711 14 6 8.4325 6.0528 2.9007 15 6 9.2034 6.7472 3.9938 16 1 8.6801 7.3317 4.7360 17 6 10.5765 6.6354 4.0469 18 7 11.2492 7.2409 5.0010 19 14 11.4816 5.6237 2.7635 20 1 11.8451 6.4920 1.6150 21 1 12.7147 5.0531 3.3625 22 1 10.6043 4.5219 2.2928 23 6 3.9654 2.8707 0.0870 24 6 3.4680 1.4313 0.2380 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.2222 2.1206 0.7995 31 1 1.5177 1.8420 1.9875 32 1 1.1989 4.2642 1.5939 33 1 1.4900 4.0249 -0.1465 34 1 3.4673 3.4399 2.1059 35 1 2.4853 6.3179 -0.3736 36 1 4.2409 6.5681 -0.5261 37 1 3.4929 5.0897 -1.1765 38 1 6.3314 4.5575 2.0189 39 1 6.4875 6.0022 0.9911 40 1 6.7633 7.4104 3.0138 41 1 6.6072 5.9653 4.0410 42 1 8.6075 4.9785 2.9585 43 1 8.7643 6.4235 1.9309 44 1 12.2153 7.1619 5.0386 45 1 5.0378 2.9071 0.2791 46 1 3.7649 3.2206 -0.9257 47 1 3.6817 1.0770 1.2464 48 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000109337642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:53 Heat of formation + Delta-G solvation = -77.903598 kcal Electronic energy + Delta-G solvation = -25812.690348 eV Core-core repulsion = 22222.410514 eV Total energy + Delta-G solvation = -3590.279833 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -39.76052 -37.01589 -36.72684 -35.78178 -34.81833 -33.01061 -32.22409 -31.28168 -29.49930 -28.38550 -26.75233 -24.48747 -23.51131 -23.31808 -21.54079 -20.44186 -19.87650 -18.86626 -17.63560 -16.93455 -16.86718 -16.04521 -16.00225 -15.44454 -15.11683 -14.97320 -14.43326 -14.29181 -14.17363 -14.06688 -13.65771 -13.49204 -12.93447 -12.83240 -12.65588 -12.36605 -12.19766 -12.15717 -12.07965 -11.91884 -11.88825 -11.78723 -11.59880 -11.56297 -11.45782 -11.23181 -11.01697 -10.95934 -10.85358 -10.60082 -10.10501 -9.88585 -9.71251 -9.29088 -9.01109 -8.65153 -8.59822 -6.09364 -4.08685 0.35871 2.65995 3.25574 3.33113 3.35081 3.53092 3.94237 4.20760 4.32475 4.39278 4.47421 4.64892 4.72727 4.75320 4.80722 4.94999 5.02142 5.05352 5.08329 5.10404 5.21387 5.24276 5.28078 5.30083 5.36884 5.43005 5.51560 5.57113 5.60767 5.63306 5.69308 5.75833 5.77026 5.86001 5.91182 6.11732 6.16323 6.25609 6.44992 6.65749 6.73468 6.75210 7.11301 7.25366 7.69972 8.46698 8.95043 9.51683 11.03930 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003026 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.459616 B = 9251.727228 C =10129.843366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.050 3.950 3 N -0.540 5.540 4 C 0.049 3.951 5 C -0.121 4.121 6 C 0.146 3.854 7 N -1.002 6.002 8 C 0.094 3.906 9 S 2.597 3.403 10 O -0.956 6.956 11 O -0.958 6.958 12 C -0.616 4.616 13 C -0.098 4.098 14 C -0.004 4.004 15 C -0.527 4.527 16 H 0.075 0.925 17 C 0.067 3.933 18 N -0.900 5.900 19 Si 0.880 3.120 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.266 1.266 23 C -0.130 4.130 24 C 0.057 3.943 25 H 0.059 0.941 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.075 0.925 29 H 0.033 0.967 30 H 0.085 0.915 31 H 0.037 0.963 32 H 0.073 0.927 33 H 0.077 0.923 34 H 0.099 0.901 35 H 0.056 0.944 36 H 0.071 0.929 37 H 0.073 0.927 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.071 0.929 41 H 0.071 0.929 42 H 0.020 0.980 43 H 0.016 0.984 44 H 0.264 0.736 45 H 0.074 0.926 46 H 0.080 0.920 47 H 0.038 0.962 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.108 -13.699 -14.348 28.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.077 4.077 3 N -0.265 5.265 4 C -0.079 4.079 5 C -0.160 4.160 6 C 0.039 3.961 7 N -0.838 5.838 8 C -0.051 4.051 9 S 2.694 3.306 10 O -0.946 6.946 11 O -0.949 6.949 12 C -0.747 4.747 13 C -0.137 4.137 14 C -0.043 4.043 15 C -0.565 4.565 16 H 0.093 0.907 17 C -0.134 4.134 18 N -0.539 5.539 19 Si 0.708 3.292 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.191 1.191 23 C -0.169 4.169 24 C -0.072 4.072 25 H 0.078 0.922 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.103 0.897 31 H 0.055 0.945 32 H 0.091 0.909 33 H 0.095 0.905 34 H 0.117 0.883 35 H 0.075 0.925 36 H 0.090 0.910 37 H 0.091 0.909 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.090 0.910 41 H 0.090 0.910 42 H 0.038 0.962 43 H 0.034 0.966 44 H 0.074 0.926 45 H 0.092 0.908 46 H 0.099 0.901 47 H 0.056 0.944 48 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -21.500 -12.933 -14.104 28.782 hybrid contribution 1.392 -1.171 -0.243 1.835 sum -20.108 -14.104 -14.347 28.444 Atomic orbital electron populations 1.21951 0.95022 1.01920 1.02582 1.22074 0.95772 0.89044 1.00841 1.62048 1.03910 1.10540 1.50028 1.22219 0.99218 0.92975 0.93506 1.21903 0.95078 0.95840 1.03219 1.20968 0.94707 0.80118 1.00278 1.57670 1.75189 1.22773 1.28164 1.21414 1.02067 0.96953 0.84714 1.05480 0.77723 0.74019 0.73348 1.93574 1.83726 1.32889 1.84461 1.93560 1.78129 1.76544 1.46621 1.30656 1.23277 1.10969 1.09826 1.21309 0.98647 0.99381 0.94349 1.19528 0.90058 0.97140 0.97536 1.21136 0.91863 1.31545 1.11959 0.90732 1.25028 0.97602 0.95258 0.95547 1.69910 1.07606 1.43546 1.32804 0.86771 0.79363 0.81107 0.81991 1.20207 1.21265 1.19071 1.22024 0.99951 0.94046 1.00922 1.22064 0.87948 0.97029 1.00164 0.92231 0.91737 0.92209 0.90668 0.94855 0.89654 0.94514 0.90854 0.90462 0.88322 0.92491 0.91040 0.90876 0.85564 0.85457 0.91036 0.91042 0.96208 0.96620 0.92617 0.90756 0.90148 0.94415 0.90313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.89 9.16 37.16 0.34 -0.55 16 2 C 0.05 0.34 5.99 -3.82 -0.02 0.31 16 3 N -0.54 -4.28 4.81 -234.67 -1.13 -5.41 16 4 C 0.05 0.40 4.85 -3.84 -0.02 0.38 16 5 C -0.12 -1.08 5.41 -26.65 -0.14 -1.23 16 6 C 0.15 1.45 2.52 -67.81 -0.17 1.28 16 7 N -1.00 -10.97 3.01 -114.48 -0.34 -11.32 16 8 C 0.09 0.83 9.20 59.85 0.55 1.39 16 9 S 2.60 37.91 5.37 -107.50 -0.58 37.33 16 10 O -0.96 -16.62 17.09 -57.54 -0.98 -17.60 16 11 O -0.96 -16.50 16.57 -57.54 -0.95 -17.45 16 12 C -0.62 -8.97 6.18 37.15 0.23 -8.74 16 13 C -0.10 -1.91 5.16 -26.73 -0.14 -2.05 16 14 C 0.00 -0.09 4.04 -27.88 -0.11 -0.21 16 15 C -0.53 -15.05 9.66 -34.44 -0.33 -15.38 16 16 H 0.07 2.28 7.99 -52.49 -0.42 1.86 16 17 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 18 N -0.90 -27.74 13.96 55.43 0.77 -26.96 16 19 Si 0.88 21.42 27.47 -169.99 -4.67 16.75 16 20 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 21 H -0.29 -6.92 7.11 56.52 0.40 -6.51 16 22 H -0.27 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.13 -1.07 5.40 -26.65 -0.14 -1.22 16 24 C 0.06 0.44 5.42 -3.84 -0.02 0.42 16 25 H 0.06 0.34 6.21 -51.93 -0.32 0.02 16 26 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 29 H 0.03 0.23 8.08 -51.93 -0.42 -0.19 16 30 H 0.09 0.60 5.81 -51.93 -0.30 0.30 16 31 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.08 0.66 7.59 -51.93 -0.39 0.26 16 34 H 0.10 1.09 6.88 -51.93 -0.36 0.74 16 35 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 36 H 0.07 0.62 7.79 -51.93 -0.40 0.21 16 37 H 0.07 0.50 6.39 -51.93 -0.33 0.17 16 38 H 0.13 1.60 8.14 -51.92 -0.42 1.17 16 39 H 0.13 1.60 8.14 -51.93 -0.42 1.17 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 41 H 0.07 1.40 8.14 -51.93 -0.42 0.97 16 42 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 43 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 45 H 0.07 0.59 8.14 -51.92 -0.42 0.17 16 46 H 0.08 0.63 6.58 -51.93 -0.34 0.29 16 47 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 379.72 15.07 5.72 5.72 Total: -1.00 -34.66 379.72 -10.96 -45.63 By element: Atomic # 1 Polarization: 5.77 SS G_CDS: -8.72 Total: -2.95 kcal Atomic # 6 Polarization: -23.65 SS G_CDS: -0.08 Total: -23.74 kcal Atomic # 7 Polarization: -42.99 SS G_CDS: -0.70 Total: -43.69 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -1.94 Total: -35.05 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -4.67 Total: 16.75 kcal Atomic # 16 Polarization: 37.91 SS G_CDS: -0.58 Total: 37.33 kcal Total LS contribution 5.72 Total: 5.72 kcal Total: -34.66 -10.96 -45.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.278 kcal (2) G-P(sol) polarization free energy of solvation -34.664 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds