Wall clock time and date at job start Tue Mar 31 2020 11:57:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46909 * 109.47025 * 2 1 4 4 C 1.46846 * 111.00162 * 45.78723 * 3 2 1 5 5 C 1.53030 * 109.52377 * 185.84294 * 4 3 2 6 6 C 1.53123 * 109.28009 * 300.82027 * 5 4 3 7 7 N 1.46494 * 109.52333 * 177.56080 * 6 5 4 8 8 C 1.46503 * 119.99860 * 300.31617 * 7 6 5 9 9 S 1.65602 * 120.00216 * 120.32080 * 7 6 5 10 10 O 1.42101 * 104.27737 * 206.06908 * 9 7 6 11 11 O 1.42098 * 104.27443 * 333.92777 * 9 7 6 12 12 C 1.81399 * 104.45029 * 89.99772 * 9 7 6 13 13 C 1.52991 * 109.47121 * 180.02562 * 12 9 7 14 14 C 1.53002 * 109.47068 * 179.97438 * 13 12 9 15 15 C 1.50707 * 109.47075 * 179.97438 * 14 13 12 16 16 H 1.07998 * 119.99994 * 0.02562 * 15 14 13 17 17 C 1.37874 * 119.99901 * 179.97438 * 15 14 13 18 18 N 1.31512 * 119.99908 * 180.02562 * 17 15 14 19 19 Si 1.86802 * 120.00086 * 0.02562 * 17 15 14 20 20 H 1.48494 * 109.46998 * 90.00106 * 19 17 15 21 21 H 1.48498 * 109.46994 * 209.99887 * 19 17 15 22 22 H 1.48494 * 109.47276 * 329.99906 * 19 17 15 23 23 C 1.53118 * 109.15585 * 57.65675 * 6 5 4 24 24 C 1.46846 * 111.00243 * 170.00251 * 3 2 1 25 25 H 1.09000 * 109.47102 * 300.00128 * 1 2 3 26 26 H 1.08999 * 109.47491 * 59.99991 * 1 2 3 27 27 H 1.09001 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47102 * 239.99872 * 2 1 3 29 29 H 1.09003 * 109.47357 * 119.99499 * 2 1 3 30 30 H 1.08999 * 109.46373 * 305.86398 * 4 3 2 31 31 H 1.08998 * 109.45881 * 65.82485 * 4 3 2 32 32 H 1.09003 * 109.50272 * 180.88314 * 5 4 3 33 33 H 1.09003 * 109.50540 * 60.76497 * 5 4 3 34 34 H 1.08993 * 109.52379 * 297.75279 * 6 5 4 35 35 H 1.09000 * 109.47136 * 90.00832 * 8 7 6 36 36 H 1.09003 * 109.47463 * 209.99925 * 8 7 6 37 37 H 1.08995 * 109.47537 * 329.99987 * 8 7 6 38 38 H 1.09000 * 109.47008 * 300.00397 * 12 9 7 39 39 H 1.08998 * 109.47299 * 59.99896 * 12 9 7 40 40 H 1.09000 * 109.47182 * 299.99896 * 13 12 9 41 41 H 1.08996 * 109.47821 * 59.99962 * 13 12 9 42 42 H 1.08996 * 109.47465 * 299.99387 * 14 13 12 43 43 H 1.09001 * 109.47075 * 60.00254 * 14 13 12 44 44 H 0.97002 * 120.00322 * 179.97438 * 18 17 15 45 45 H 1.09008 * 109.50062 * 182.40805 * 23 6 5 46 46 H 1.09002 * 109.53946 * 62.30558 * 23 6 5 47 47 H 1.08998 * 109.45759 * 294.17597 * 24 3 2 48 48 H 1.09003 * 109.46299 * 54.15067 * 24 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3851 0.0000 4 6 1.2938 2.1999 0.9826 5 6 1.7263 3.6622 0.8539 6 6 3.2353 3.7659 1.0921 7 7 3.6649 5.1549 0.9128 8 6 3.4577 5.8255 -0.3732 9 16 4.3849 5.9670 2.1636 10 8 4.1032 7.3350 1.9015 11 8 3.8864 5.3268 3.3301 12 6 6.1561 5.6317 1.9611 13 6 6.9386 6.3361 3.0711 14 6 8.4325 6.0528 2.9007 15 6 9.2034 6.7472 3.9938 16 1 8.6801 7.3317 4.7360 17 6 10.5765 6.6354 4.0469 18 7 11.2492 7.2409 5.0010 19 14 11.4816 5.6237 2.7635 20 1 11.8451 6.4920 1.6150 21 1 12.7147 5.0531 3.3625 22 1 10.6043 4.5219 2.2928 23 6 3.9654 2.8707 0.0870 24 6 3.4680 1.4313 0.2380 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 0.2222 2.1206 0.7995 31 1 1.5177 1.8420 1.9875 32 1 1.1989 4.2642 1.5939 33 1 1.4900 4.0249 -0.1465 34 1 3.4673 3.4399 2.1059 35 1 2.4853 6.3179 -0.3736 36 1 4.2409 6.5681 -0.5261 37 1 3.4929 5.0897 -1.1765 38 1 6.3314 4.5575 2.0189 39 1 6.4875 6.0022 0.9911 40 1 6.7633 7.4104 3.0138 41 1 6.6072 5.9653 4.0410 42 1 8.6075 4.9785 2.9585 43 1 8.7643 6.4235 1.9309 44 1 12.2153 7.1619 5.0386 45 1 5.0378 2.9071 0.2791 46 1 3.7649 3.2206 -0.9257 47 1 3.6817 1.0770 1.2464 48 1 3.9755 0.7939 -0.4861 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000109337642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:53 Heat of formation + Delta-G solvation = -103.210730 kcal Electronic energy + Delta-G solvation = -25813.787747 eV Core-core repulsion = 22222.410514 eV Total energy + Delta-G solvation = -3591.377233 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.41446 -38.27166 -37.47147 -37.03314 -36.52547 -34.26640 -33.65064 -31.92190 -30.17204 -30.07986 -27.48127 -25.53459 -24.90844 -23.97258 -22.33629 -21.97681 -20.58219 -19.92272 -18.99649 -18.68664 -17.68746 -17.33983 -16.92898 -16.27623 -16.16504 -15.96209 -15.66625 -15.46178 -15.15321 -14.87739 -14.76203 -14.30867 -14.16073 -14.08346 -13.68429 -13.57208 -13.40505 -13.25155 -13.22386 -13.12191 -12.76945 -12.70618 -12.59904 -12.57356 -12.47655 -12.17314 -12.09925 -11.88178 -11.86138 -11.67301 -11.60933 -11.42769 -11.31956 -11.16079 -10.78791 -9.90190 -9.24476 -8.31038 -6.37303 -0.80172 1.35987 1.38727 1.50349 1.64322 2.35444 2.78584 2.96499 3.03925 3.10737 3.52149 3.73091 3.84231 3.85433 4.01333 4.09872 4.16061 4.28967 4.30723 4.35587 4.47249 4.50863 4.57185 4.63048 4.64873 4.68117 4.73276 4.80368 4.86533 4.91263 4.94098 4.97477 5.01210 5.05094 5.13786 5.20954 5.24324 5.31078 5.34730 5.43391 5.47519 5.60920 5.64214 6.15668 6.17267 6.23737 6.70794 7.27351 8.85973 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018102 B = 0.003026 C = 0.002763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1546.459616 B = 9251.727228 C =10129.843366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.048 3.952 3 N -0.543 5.543 4 C 0.051 3.949 5 C -0.119 4.119 6 C 0.140 3.860 7 N -0.992 5.992 8 C 0.084 3.916 9 S 2.611 3.389 10 O -0.988 6.988 11 O -0.991 6.991 12 C -0.608 4.608 13 C -0.103 4.103 14 C -0.004 4.004 15 C -0.545 4.545 16 H 0.029 0.971 17 C 0.000 4.000 18 N -0.952 5.952 19 Si 0.956 3.044 20 H -0.264 1.264 21 H -0.285 1.285 22 H -0.238 1.238 23 C -0.125 4.125 24 C 0.055 3.945 25 H 0.056 0.944 26 H 0.062 0.938 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.030 0.970 30 H 0.095 0.905 31 H 0.027 0.973 32 H 0.061 0.939 33 H 0.086 0.914 34 H 0.084 0.916 35 H 0.057 0.943 36 H 0.076 0.924 37 H 0.100 0.900 38 H 0.152 0.848 39 H 0.156 0.844 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.032 0.968 43 H 0.032 0.968 44 H 0.267 0.733 45 H 0.081 0.919 46 H 0.090 0.910 47 H 0.030 0.970 48 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.429 -15.947 -17.687 32.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 N -0.269 5.269 4 C -0.077 4.077 5 C -0.158 4.158 6 C 0.034 3.966 7 N -0.830 5.830 8 C -0.060 4.060 9 S 2.709 3.291 10 O -0.978 6.978 11 O -0.981 6.981 12 C -0.740 4.740 13 C -0.143 4.143 14 C -0.042 4.042 15 C -0.583 4.583 16 H 0.047 0.953 17 C -0.197 4.197 18 N -0.593 5.593 19 Si 0.778 3.222 20 H -0.189 1.189 21 H -0.211 1.211 22 H -0.161 1.161 23 C -0.164 4.164 24 C -0.074 4.074 25 H 0.075 0.925 26 H 0.081 0.919 27 H 0.088 0.912 28 H 0.100 0.900 29 H 0.048 0.952 30 H 0.114 0.886 31 H 0.045 0.955 32 H 0.080 0.920 33 H 0.104 0.896 34 H 0.102 0.898 35 H 0.076 0.924 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.170 0.830 39 H 0.174 0.826 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.076 0.924 45 H 0.100 0.900 46 H 0.109 0.891 47 H 0.049 0.951 48 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -21.851 -15.177 -17.442 31.812 hybrid contribution 1.414 -0.436 0.857 1.710 sum -20.437 -15.613 -16.584 30.602 Atomic orbital electron populations 1.21923 0.94340 1.02550 1.02345 1.22138 0.96382 0.88374 1.01013 1.62086 1.03966 1.11180 1.49655 1.22197 0.99899 0.92412 0.93196 1.21885 0.94287 0.96371 1.03305 1.21127 0.95618 0.79604 1.00272 1.57347 1.74422 1.23126 1.28064 1.21680 1.02369 0.97833 0.84114 1.04793 0.77766 0.73247 0.73327 1.93529 1.84282 1.35029 1.84995 1.93516 1.78806 1.76917 1.48857 1.30553 1.22226 1.12103 1.09073 1.21176 0.97364 0.99618 0.96113 1.19498 0.91605 0.97068 0.96072 1.21553 0.92651 1.31466 1.12639 0.95308 1.26133 0.98667 0.96687 0.98180 1.70085 1.08138 1.45644 1.35386 0.85574 0.77925 0.79927 0.78728 1.18871 1.21117 1.16102 1.22010 1.00111 0.93666 1.00650 1.22109 0.88078 0.97016 1.00191 0.92487 0.91875 0.91217 0.89959 0.95171 0.88643 0.95463 0.91993 0.89581 0.89838 0.92412 0.90571 0.88143 0.83010 0.82626 0.92010 0.92126 0.94938 0.94995 0.92405 0.89998 0.89123 0.95127 0.89062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.16 71.98 0.66 -0.79 16 2 C 0.05 0.55 5.99 86.30 0.52 1.06 16 3 N -0.54 -7.43 4.81 -896.36 -4.31 -11.73 16 4 C 0.05 0.75 4.85 86.32 0.42 1.17 16 5 C -0.12 -1.95 5.41 30.65 0.17 -1.79 16 6 C 0.14 2.53 2.52 45.07 0.11 2.64 16 7 N -0.99 -19.76 3.01 -516.11 -1.55 -21.31 16 8 C 0.08 1.27 9.20 127.77 1.18 2.44 16 9 S 2.61 73.99 5.37 -56.49 -0.30 73.69 16 10 O -0.99 -34.03 17.09 -127.65 -2.18 -36.21 16 11 O -0.99 -34.31 16.57 -127.65 -2.12 -36.43 16 12 C -0.61 -16.27 6.18 71.98 0.44 -15.83 16 13 C -0.10 -4.02 5.16 30.59 0.16 -3.86 16 14 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 15 C -0.55 -31.80 9.66 25.60 0.25 -31.56 16 16 H 0.03 1.86 7.99 -2.91 -0.02 1.84 16 17 C 0.00 0.00 5.47 84.65 0.46 0.46 16 18 N -0.95 -60.32 13.96 21.45 0.30 -60.02 16 19 Si 0.96 43.16 27.47 68.60 1.88 45.04 16 20 H -0.26 -11.34 7.11 99.48 0.71 -10.63 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.24 -9.60 6.54 99.48 0.65 -8.95 16 23 C -0.13 -1.68 5.40 30.65 0.17 -1.52 16 24 C 0.05 0.73 5.42 86.33 0.47 1.19 16 25 H 0.06 0.56 6.21 -2.39 -0.01 0.55 16 26 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 27 H 0.07 0.52 8.14 -2.39 -0.02 0.50 16 28 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.03 0.36 8.08 -2.39 -0.02 0.34 16 30 H 0.10 1.19 5.81 -2.39 -0.01 1.18 16 31 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 32 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 33 H 0.09 1.26 7.59 -2.39 -0.02 1.24 16 34 H 0.08 1.78 6.88 -2.39 -0.02 1.77 16 35 H 0.06 0.88 8.14 -2.39 -0.02 0.86 16 36 H 0.08 1.10 7.79 -2.39 -0.02 1.08 16 37 H 0.10 0.98 6.39 -2.39 -0.02 0.96 16 38 H 0.15 3.30 8.14 -2.39 -0.02 3.28 16 39 H 0.16 3.30 8.14 -2.39 -0.02 3.28 16 40 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 41 H 0.06 2.42 8.14 -2.39 -0.02 2.40 16 42 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 43 H 0.03 1.35 7.57 -2.39 -0.02 1.33 16 44 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 45 H 0.08 0.99 8.14 -2.38 -0.02 0.98 16 46 H 0.09 1.05 6.58 -2.39 -0.02 1.04 16 47 H 0.03 0.45 8.14 -2.39 -0.02 0.43 16 48 H 0.09 1.00 8.12 -2.39 -0.02 0.98 16 Total: -1.00 -76.95 379.72 -2.31 -79.25 By element: Atomic # 1 Polarization: 13.29 SS G_CDS: 0.85 Total: 14.14 kcal Atomic # 6 Polarization: -51.54 SS G_CDS: 5.12 Total: -46.42 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -5.56 Total: -93.06 kcal Atomic # 8 Polarization: -68.34 SS G_CDS: -4.30 Total: -72.64 kcal Atomic # 14 Polarization: 43.16 SS G_CDS: 1.88 Total: 45.04 kcal Atomic # 16 Polarization: 73.99 SS G_CDS: -0.30 Total: 73.69 kcal Total: -76.95 -2.31 -79.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000109337642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.958 kcal (2) G-P(sol) polarization free energy of solvation -76.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.211 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds