Wall clock time and date at job start Tue Mar 31 2020 11:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46897 * 109.47150 * 2 1 4 4 C 1.46857 * 110.99820 * 52.16262 * 3 2 1 5 5 C 1.53031 * 109.52454 * 185.83893 * 4 3 2 6 6 C 1.53119 * 109.28032 * 300.82163 * 5 4 3 7 7 C 1.53115 * 109.15367 * 57.65376 * 6 5 4 8 8 C 1.46850 * 111.00282 * 176.36754 * 3 2 1 9 9 H 1.09001 * 109.45954 * 294.16848 * 8 3 2 10 10 C 1.52996 * 109.46033 * 54.14980 * 8 3 2 11 11 N 1.46492 * 109.47459 * 54.47705 * 10 8 3 12 12 S 1.65600 * 120.00192 * 163.44439 * 11 10 8 13 13 O 1.42094 * 104.27568 * 308.92778 * 12 11 10 14 14 O 1.42099 * 104.27902 * 181.07153 * 12 11 10 15 15 C 1.81394 * 104.45049 * 64.99907 * 12 11 10 16 16 C 1.53001 * 109.47281 * 179.97438 * 15 12 11 17 17 C 1.52999 * 109.47412 * 179.97438 * 16 15 12 18 18 C 1.50693 * 109.47323 * 180.02562 * 17 16 15 19 19 H 1.08002 * 120.00311 * 359.72396 * 18 17 16 20 20 C 1.37883 * 120.00227 * 180.02562 * 18 17 16 21 21 N 1.31511 * 119.99606 * 359.72609 * 20 18 17 22 22 Si 1.86794 * 120.00150 * 179.72090 * 20 18 17 23 23 H 1.48503 * 109.47035 * 60.00224 * 22 20 18 24 24 H 1.48497 * 109.47040 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.47455 * 300.00295 * 22 20 18 26 26 H 1.08995 * 109.47253 * 59.99850 * 1 2 3 27 27 H 1.09010 * 109.47030 * 179.97438 * 1 2 3 28 28 H 1.08999 * 109.46991 * 299.99394 * 1 2 3 29 29 H 1.08998 * 109.47464 * 240.00374 * 2 1 3 30 30 H 1.09005 * 109.47493 * 120.00593 * 2 1 3 31 31 H 1.08999 * 109.45630 * 305.85629 * 4 3 2 32 32 H 1.08993 * 109.46384 * 65.83101 * 4 3 2 33 33 H 1.09000 * 109.50244 * 60.75681 * 5 4 3 34 34 H 1.08996 * 109.50851 * 180.83506 * 5 4 3 35 35 H 1.08995 * 109.52530 * 177.56240 * 6 5 4 36 36 H 1.09006 * 109.52071 * 297.68452 * 6 5 4 37 37 H 1.09008 * 109.49653 * 182.39490 * 7 6 5 38 38 H 1.09006 * 109.51238 * 62.28405 * 7 6 5 39 39 H 1.09008 * 109.47125 * 294.47716 * 10 8 3 40 40 H 1.09001 * 109.46770 * 174.48320 * 10 8 3 41 41 H 0.97001 * 120.00011 * 343.44399 * 11 10 8 42 42 H 1.09006 * 109.47107 * 60.00574 * 15 12 11 43 43 H 1.08995 * 109.47610 * 299.99969 * 15 12 11 44 44 H 1.08998 * 109.46559 * 60.00067 * 16 15 12 45 45 H 1.08998 * 109.47701 * 300.00474 * 16 15 12 46 46 H 1.09004 * 109.47131 * 60.00068 * 17 16 15 47 47 H 1.09006 * 109.47011 * 300.00674 * 17 16 15 48 48 H 0.97005 * 119.99591 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.4021 2.1615 1.0828 5 6 1.8217 3.6283 0.9638 6 6 3.3475 3.7260 1.0465 7 6 3.9665 2.8701 -0.0619 8 6 3.4850 1.4251 0.0869 9 1 3.8023 1.0343 1.0537 10 6 4.0855 0.5700 -1.0307 11 7 3.5547 1.0120 -2.3226 12 16 4.3123 0.5649 -3.7257 13 8 5.6738 0.9128 -3.5150 14 8 3.5476 1.1857 -4.7500 15 6 4.1185 -1.2375 -3.7903 16 6 4.7846 -1.7770 -5.0577 17 6 4.6217 -3.2973 -5.1119 18 6 5.2783 -3.8287 -6.3598 19 1 5.7594 -3.1495 -7.0480 20 6 5.2594 -5.1814 -6.6263 21 7 4.6731 -6.0084 -5.7886 22 14 6.0666 -5.8393 -8.1771 23 1 7.5113 -5.4957 -8.1671 24 1 5.9085 -7.3149 -8.2296 25 1 5.4211 -5.2300 -9.3677 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0278 -0.0005 28 1 -0.3633 0.5137 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5139 0.8900 31 1 0.3171 2.0869 1.0099 32 1 1.7293 1.7671 2.0448 33 1 1.4828 4.0273 0.0077 34 1 1.3751 4.2016 1.7762 35 1 3.6535 4.7643 0.9188 36 1 3.6835 3.3641 2.0182 37 1 5.0532 2.9016 0.0180 38 1 3.6613 3.2571 -1.0342 39 1 3.8235 -0.4757 -0.8688 40 1 5.1702 0.6775 -1.0275 41 1 2.7596 1.5665 -2.3562 42 1 3.0578 -1.4887 -3.8028 43 1 4.5876 -1.6851 -2.9142 44 1 5.8451 -1.5258 -5.0457 45 1 4.3151 -1.3294 -5.9337 46 1 3.5611 -3.5489 -5.1236 47 1 5.0915 -3.7445 -4.2358 48 1 4.6601 -6.9602 -5.9758 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000111353420.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:57:58 Heat of formation + Delta-G solvation = -94.186411 kcal Electronic energy + Delta-G solvation = -25758.434369 eV Core-core repulsion = 22167.448460 eV Total energy + Delta-G solvation = -3590.985909 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -39.93091 -36.81963 -35.69340 -35.24104 -34.65937 -34.61424 -32.17042 -31.08452 -29.87958 -27.78289 -26.28657 -24.89559 -23.69728 -22.03581 -21.42342 -20.65011 -19.92398 -19.04717 -17.46039 -16.86042 -16.48398 -15.91349 -15.65048 -15.49097 -15.08471 -15.01007 -14.49053 -14.43311 -14.31836 -14.03222 -13.77242 -13.50416 -12.89466 -12.54915 -12.38156 -12.25295 -12.00088 -11.96288 -11.89513 -11.83240 -11.75556 -11.71037 -11.45139 -11.30666 -11.17399 -10.96545 -10.88864 -10.85191 -10.59741 -10.51333 -10.40966 -9.92933 -9.59825 -9.28484 -9.04408 -8.60756 -8.39653 -6.04954 -4.07853 0.55507 2.94364 3.32787 3.36493 3.39870 3.53989 4.02768 4.33652 4.41036 4.43438 4.50283 4.58587 4.75005 4.86369 4.92985 4.96939 5.06327 5.14133 5.21538 5.22852 5.25590 5.28625 5.31770 5.33738 5.43139 5.49806 5.60897 5.64829 5.68913 5.74796 5.82696 5.88350 5.91028 5.93048 5.96624 6.12995 6.29748 6.47647 6.80468 6.80693 6.89359 7.15482 7.57817 7.68269 7.93197 8.34052 8.98228 9.56723 11.06278 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021920 B = 0.002797 C = 0.002607 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1277.043972 B =10008.465174 C =10735.686486 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.044 3.956 3 N -0.532 5.532 4 C 0.052 3.948 5 C -0.118 4.118 6 C -0.122 4.122 7 C -0.114 4.114 8 C 0.081 3.919 9 H 0.054 0.946 10 C 0.120 3.880 11 N -1.114 6.114 12 S 2.602 3.398 13 O -0.965 6.965 14 O -0.964 6.964 15 C -0.611 4.611 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.054 0.946 29 H 0.085 0.915 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.064 0.936 36 H 0.057 0.943 37 H 0.071 0.929 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.085 0.915 41 H 0.423 0.577 42 H 0.128 0.872 43 H 0.124 0.876 44 H 0.065 0.935 45 H 0.065 0.935 46 H 0.020 0.980 47 H 0.020 0.980 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 16.962 18.198 25.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.084 4.084 3 N -0.258 5.258 4 C -0.076 4.076 5 C -0.156 4.156 6 C -0.159 4.159 7 C -0.152 4.152 8 C -0.028 4.028 9 H 0.071 0.929 10 C -0.008 4.008 11 N -0.874 5.874 12 S 2.697 3.303 13 O -0.955 6.955 14 O -0.955 6.955 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.144 4.144 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.073 0.927 29 H 0.103 0.897 30 H 0.051 0.949 31 H 0.100 0.900 32 H 0.049 0.951 33 H 0.090 0.910 34 H 0.082 0.918 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.089 0.911 38 H 0.095 0.905 39 H 0.082 0.918 40 H 0.104 0.896 41 H 0.259 0.741 42 H 0.146 0.854 43 H 0.143 0.857 44 H 0.084 0.916 45 H 0.084 0.916 46 H 0.038 0.962 47 H 0.038 0.962 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.806 17.491 17.216 25.469 hybrid contribution 0.004 -1.341 0.353 1.386 sum -6.801 16.150 17.569 24.815 Atomic orbital electron populations 1.21903 0.94893 1.02042 1.02373 1.22194 0.95948 0.88878 1.01357 1.61913 1.05452 1.12431 1.46036 1.22175 0.99873 0.93695 0.91852 1.21604 0.95909 0.95672 1.02421 1.21591 0.95557 1.00104 0.98676 1.21644 1.00110 0.93444 0.99980 1.21802 0.87636 0.96494 0.96889 0.92865 1.21377 0.98890 0.97537 0.82966 1.55520 1.44625 1.67353 1.19918 1.05222 0.74143 0.78175 0.72776 1.93557 1.35033 1.82126 1.84774 1.93575 1.71617 1.74333 1.55931 1.30559 1.10835 1.23747 1.09071 1.21487 0.99071 1.02400 0.91552 1.19049 0.97533 0.86695 0.97410 1.21228 1.35997 0.92421 1.06845 0.92427 1.25017 0.95412 0.97062 0.96874 1.69948 1.43838 1.03297 1.36410 0.86614 0.80012 0.77654 0.83496 1.20110 1.21262 1.20114 0.91602 0.92056 0.92659 0.89714 0.94932 0.90034 0.95116 0.90976 0.91769 0.91741 0.92400 0.91078 0.90496 0.91772 0.89631 0.74129 0.85379 0.85719 0.91637 0.91621 0.96179 0.96182 0.92863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.43 37.15 0.35 -0.77 16 2 C 0.04 0.35 5.17 -3.83 -0.02 0.33 16 3 N -0.53 -4.27 3.82 -226.70 -0.87 -5.14 16 4 C 0.05 0.36 5.04 -3.83 -0.02 0.34 16 5 C -0.12 -0.78 6.09 -26.65 -0.16 -0.94 16 6 C -0.12 -0.83 6.00 -26.61 -0.16 -0.99 16 7 C -0.11 -0.93 5.27 -26.66 -0.14 -1.07 16 8 C 0.08 0.67 2.14 -67.73 -0.14 0.52 16 9 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 10 C 0.12 1.11 5.03 -4.05 -0.02 1.09 16 11 N -1.11 -12.13 5.20 -10.62 -0.06 -12.19 16 12 S 2.60 38.21 5.46 -107.50 -0.59 37.62 16 13 O -0.97 -16.86 17.48 -57.54 -1.01 -17.87 16 14 O -0.96 -17.21 18.08 -57.54 -1.04 -18.25 16 15 C -0.61 -9.35 6.07 37.16 0.23 -9.12 16 16 C -0.11 -2.16 5.16 -26.73 -0.14 -2.29 16 17 C 0.03 0.80 4.97 -27.89 -0.14 0.66 16 18 C -0.53 -14.91 9.11 -34.44 -0.31 -15.22 16 19 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.65 13.29 55.43 0.74 -25.91 16 22 Si 0.89 21.67 29.54 -169.99 -5.02 16.65 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 25 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.43 8.14 -51.92 -0.42 0.00 16 28 H 0.05 0.36 6.19 -51.93 -0.32 0.03 16 29 H 0.08 0.72 6.47 -51.93 -0.34 0.39 16 30 H 0.03 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.08 0.54 5.84 -51.93 -0.30 0.23 16 32 H 0.03 0.22 8.14 -51.93 -0.42 -0.21 16 33 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 34 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 35 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.57 8.14 -51.92 -0.42 0.15 16 38 H 0.08 0.72 7.60 -51.93 -0.39 0.32 16 39 H 0.06 0.52 6.75 -51.92 -0.35 0.17 16 40 H 0.09 0.81 7.67 -51.93 -0.40 0.41 16 41 H 0.42 4.36 7.84 -34.47 -0.27 4.09 16 42 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 43 H 0.12 1.68 8.14 -51.93 -0.42 1.25 16 44 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 45 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 46 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 47 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 48 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 383.81 15.07 5.78 5.78 Total: -1.00 -34.22 383.81 -11.51 -45.73 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.68 Total: -0.51 kcal Atomic # 6 Polarization: -25.14 SS G_CDS: -0.78 Total: -25.92 kcal Atomic # 7 Polarization: -43.05 SS G_CDS: -0.18 Total: -43.23 kcal Atomic # 8 Polarization: -34.08 SS G_CDS: -2.05 Total: -36.12 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -5.02 Total: 16.65 kcal Atomic # 16 Polarization: 38.21 SS G_CDS: -0.59 Total: 37.62 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.22 -11.51 -45.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000111353420.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.454 kcal (2) G-P(sol) polarization free energy of solvation -34.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.186 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds