Wall clock time and date at job start Tue Mar 31 2020 12:23:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 S 1.81403 * 109.47116 * 2 1 4 4 O 1.42106 * 110.54188 * 291.62828 * 3 2 1 5 5 O 1.42096 * 110.54423 * 68.37684 * 3 2 1 6 6 N 1.65601 * 104.45293 * 180.02562 * 3 2 1 7 7 C 1.47079 * 120.87990 * 269.72324 * 6 3 2 8 8 C 1.53697 * 108.28067 * 128.75062 * 7 6 3 9 9 N 1.46900 * 109.25333 * 54.08261 * 8 7 6 10 10 C 1.46898 * 111.00266 * 172.61053 * 9 8 7 11 11 C 1.52996 * 109.47345 * 211.15030 * 10 9 8 12 12 C 1.53000 * 109.46804 * 296.02250 * 11 10 9 13 13 C 1.53001 * 109.47110 * 56.01820 * 11 10 9 14 14 C 1.52999 * 109.47289 * 176.02014 * 11 10 9 15 15 C 1.50694 * 109.47137 * 179.97438 * 14 11 10 16 16 H 1.08000 * 120.00061 * 0.02562 * 15 14 11 17 17 C 1.37881 * 119.99921 * 180.02562 * 15 14 11 18 18 N 1.31515 * 119.99735 * 180.02562 * 17 15 14 19 19 Si 1.86803 * 119.99973 * 359.97438 * 17 15 14 20 20 H 1.48499 * 109.46691 * 90.00345 * 19 17 15 21 21 H 1.48497 * 109.46996 * 210.00089 * 19 17 15 22 22 H 1.48490 * 109.47020 * 330.00456 * 19 17 15 23 23 C 1.46907 * 111.27037 * 296.75717 * 9 8 7 24 24 C 1.47075 * 120.88146 * 89.99754 * 6 3 2 25 25 H 1.09006 * 109.46562 * 180.02562 * 1 2 3 26 26 H 1.09003 * 109.46802 * 299.99500 * 1 2 3 27 27 H 1.08996 * 109.47343 * 60.00076 * 1 2 3 28 28 H 1.09004 * 109.47299 * 240.00338 * 2 1 3 29 29 H 1.09002 * 109.47752 * 119.99924 * 2 1 3 30 30 H 1.09000 * 109.63157 * 248.52414 * 7 6 3 31 31 H 1.09009 * 109.63119 * 9.10275 * 7 6 3 32 32 H 1.08998 * 109.64472 * 294.08681 * 8 7 6 33 33 H 1.08991 * 109.42470 * 173.94674 * 8 7 6 34 34 H 1.09003 * 109.46541 * 331.14984 * 10 9 8 35 35 H 1.09000 * 109.47430 * 91.14493 * 10 9 8 36 36 H 1.08991 * 109.47373 * 70.95602 * 12 11 10 37 37 H 1.09006 * 109.46825 * 190.95785 * 12 11 10 38 38 H 1.08998 * 109.47423 * 310.94792 * 12 11 10 39 39 H 1.09000 * 109.47122 * 55.57531 * 13 11 10 40 40 H 1.09000 * 109.47077 * 175.57328 * 13 11 10 41 41 H 1.08996 * 109.47056 * 295.57407 * 13 11 10 42 42 H 1.08999 * 109.47381 * 300.00180 * 14 11 10 43 43 H 1.09005 * 109.46980 * 59.99597 * 14 11 10 44 44 H 0.97003 * 119.99980 * 179.97438 * 18 17 15 45 45 H 1.08995 * 109.49293 * 303.14816 * 23 9 8 46 46 H 1.08991 * 109.49346 * 183.06495 * 23 9 8 47 47 H 1.08995 * 109.63314 * 350.89887 * 24 6 3 48 48 H 1.08998 * 109.62876 * 111.48291 * 24 6 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1346 1.7103 0.0000 4 8 1.8384 2.3439 -1.2370 5 8 1.8386 2.3439 1.2370 6 7 3.7843 1.5654 -0.0007 7 6 4.5373 1.5053 1.2612 8 6 5.4652 0.2810 1.2111 9 7 6.2912 0.3486 -0.0018 10 6 7.3130 -0.7068 -0.0025 11 6 8.5557 -0.2131 -0.7458 12 6 8.2047 0.0418 -2.2130 13 6 9.0498 1.0862 -0.1065 14 6 9.6555 -1.2734 -0.6612 15 6 10.8793 -0.7874 -1.3940 16 1 10.8735 0.1812 -1.8718 17 6 12.0065 -1.5792 -1.4543 18 7 13.0747 -1.1547 -2.0934 19 14 12.0167 -3.2541 -0.6273 20 1 11.5450 -4.2834 -1.5881 21 1 13.3974 -3.5815 -0.1894 22 1 11.1160 -3.2288 0.5530 23 6 5.4643 0.2814 -1.2142 24 6 4.5357 1.4995 -1.2633 25 1 -0.3633 -1.0278 0.0005 26 1 -0.3633 0.5138 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 5.1296 2.4129 1.3779 31 1 3.8443 1.4070 2.0969 32 1 4.8682 -0.6308 1.1942 33 1 6.1095 0.2783 2.0902 34 1 7.5790 -0.9555 1.0250 35 1 6.9197 -1.5930 -0.5006 36 1 7.5698 0.9247 -2.2866 37 1 9.1198 0.2037 -2.7827 38 1 7.6745 -0.8216 -2.6151 39 1 9.2251 0.9241 0.9570 40 1 9.9790 1.3961 -0.5848 41 1 8.2974 1.8640 -0.2363 42 1 9.9055 -1.4550 0.3840 43 1 9.3034 -2.1991 -1.1167 44 1 13.8679 -1.7116 -2.1356 45 1 4.8673 -0.6304 -1.1972 46 1 6.1079 0.2789 -2.0937 47 1 3.8418 1.3975 -2.0976 48 1 5.1279 2.4065 -1.3847 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000127281832.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:23:10 Heat of formation + Delta-G solvation = -65.558285 kcal Electronic energy + Delta-G solvation = -26410.098481 eV Core-core repulsion = 22820.353981 eV Total energy + Delta-G solvation = -3589.744500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.37713 -37.43778 -36.81329 -36.21408 -33.90164 -33.55977 -32.12882 -31.32879 -28.01962 -27.36679 -26.41161 -24.68384 -24.20093 -23.71862 -22.07484 -20.64185 -19.02065 -18.18165 -17.76908 -16.81488 -16.72560 -16.56236 -15.34790 -15.23541 -15.07091 -14.73958 -14.48045 -14.27114 -14.05177 -13.63798 -13.51371 -13.12878 -12.94695 -12.87687 -12.65847 -12.46378 -12.38208 -12.25182 -12.16183 -12.01955 -11.72691 -11.61175 -11.46611 -11.18601 -11.01409 -10.85992 -10.81801 -10.56952 -10.47475 -10.32985 -9.82092 -9.67311 -9.46451 -9.11260 -8.91305 -8.51109 -8.10816 -6.01321 -3.97355 -0.07596 2.31817 3.29812 3.38085 3.40642 3.52689 3.77593 3.93092 4.13514 4.34222 4.42136 4.46453 4.72872 4.87730 4.98487 5.08377 5.11135 5.12376 5.23636 5.26601 5.31657 5.43624 5.46988 5.56987 5.63629 5.70749 5.78230 5.86038 5.89584 5.96404 6.10821 6.18419 6.31200 6.42962 6.61852 6.67700 6.80028 7.06030 7.14625 7.15951 7.19778 7.31269 7.36439 7.48651 7.84327 8.58618 9.04953 9.61760 11.11775 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.030793 B = 0.002845 C = 0.002802 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 909.064976 B = 9837.824324 C = 9989.054858 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.635 4.635 3 S 2.608 3.392 4 O -0.954 6.954 5 O -0.955 6.955 6 N -1.000 6.000 7 C 0.128 3.872 8 C 0.040 3.960 9 N -0.526 5.526 10 C 0.063 3.937 11 C -0.042 4.042 12 C -0.135 4.135 13 C -0.115 4.115 14 C -0.005 4.005 15 C -0.506 4.506 16 H 0.079 0.921 17 C 0.064 3.936 18 N -0.905 5.905 19 Si 0.876 3.124 20 H -0.280 1.280 21 H -0.290 1.290 22 H -0.267 1.267 23 C 0.023 3.977 24 C 0.126 3.874 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.130 0.870 29 H 0.129 0.871 30 H 0.083 0.917 31 H 0.088 0.912 32 H 0.031 0.969 33 H 0.086 0.914 34 H 0.065 0.935 35 H 0.033 0.967 36 H 0.046 0.954 37 H 0.071 0.929 38 H 0.035 0.965 39 H 0.034 0.966 40 H 0.060 0.940 41 H 0.046 0.954 42 H 0.013 0.987 43 H 0.006 0.994 44 H 0.261 0.739 45 H 0.030 0.970 46 H 0.110 0.890 47 H 0.089 0.911 48 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.908 1.787 5.389 24.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.764 4.764 3 S 2.701 3.299 4 O -0.944 6.944 5 O -0.946 6.946 6 N -0.839 5.839 7 C 0.002 3.998 8 C -0.090 4.090 9 N -0.250 5.250 10 C -0.064 4.064 11 C -0.043 4.043 12 C -0.192 4.192 13 C -0.173 4.173 14 C -0.043 4.043 15 C -0.544 4.544 16 H 0.097 0.903 17 C -0.136 4.136 18 N -0.545 5.545 19 Si 0.704 3.296 20 H -0.206 1.206 21 H -0.216 1.216 22 H -0.192 1.192 23 C -0.106 4.106 24 C 0.001 3.999 25 H 0.099 0.901 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.148 0.852 29 H 0.148 0.852 30 H 0.101 0.899 31 H 0.107 0.893 32 H 0.049 0.951 33 H 0.105 0.895 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.065 0.935 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.079 0.921 41 H 0.065 0.935 42 H 0.031 0.969 43 H 0.025 0.975 44 H 0.071 0.929 45 H 0.048 0.952 46 H 0.128 0.872 47 H 0.107 0.893 48 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -23.980 2.995 5.350 24.752 hybrid contribution -0.030 -2.739 0.446 2.775 sum -24.010 0.256 5.796 24.701 Atomic orbital electron populations 1.21498 0.90597 1.05018 1.03391 1.30596 1.07095 1.27132 1.11536 1.05165 0.73003 0.77437 0.74288 1.93597 1.83255 1.72369 1.45178 1.93589 1.83294 1.72415 1.45253 1.57780 1.23674 1.89622 1.12776 1.21644 0.94531 0.99570 0.84035 1.22618 0.95629 0.96250 0.94512 1.61813 1.13593 1.48754 1.00839 1.22394 0.92349 0.91005 1.00630 1.20360 0.92670 0.97047 0.94223 1.22001 1.01582 0.98900 0.96737 1.21589 1.00545 0.96160 0.98974 1.19627 0.94246 0.93736 0.96653 1.21133 0.95495 1.04789 1.32995 0.90330 1.25023 0.95641 0.97853 0.95094 1.69909 1.03616 1.37747 1.43222 0.86849 0.77086 0.85196 0.80499 1.20565 1.21590 1.19207 1.22992 0.95798 0.96022 0.95834 1.21585 0.94589 0.99831 0.83875 0.90084 0.91011 0.90962 0.85158 0.85238 0.89850 0.89337 0.95069 0.89523 0.91680 0.94824 0.93493 0.90999 0.94579 0.94650 0.92079 0.93522 0.96856 0.97528 0.92889 0.95190 0.87213 0.89281 0.89849 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.86 9.92 37.16 0.37 -0.49 16 2 C -0.63 -4.00 6.90 37.16 0.26 -3.74 16 3 S 2.61 24.93 5.42 -107.50 -0.58 24.35 16 4 O -0.95 -11.88 16.79 -57.54 -0.97 -12.84 16 5 O -0.96 -11.69 16.78 -57.54 -0.97 -12.66 16 6 N -1.00 -9.59 3.25 -112.97 -0.37 -9.96 16 7 C 0.13 1.19 6.50 -3.36 -0.02 1.16 16 8 C 0.04 0.40 5.54 -3.46 -0.02 0.38 16 9 N -0.53 -6.46 3.59 -234.03 -0.84 -7.30 16 10 C 0.06 0.94 4.24 -3.83 -0.02 0.92 16 11 C -0.04 -0.77 0.60 -154.51 -0.09 -0.86 16 12 C -0.14 -2.33 6.81 37.16 0.25 -2.08 16 13 C -0.12 -2.10 8.01 37.16 0.30 -1.80 16 14 C 0.00 -0.11 3.11 -27.89 -0.09 -0.19 16 15 C -0.51 -13.59 8.00 -34.44 -0.28 -13.87 16 16 H 0.08 2.26 6.00 -52.49 -0.32 1.95 16 17 C 0.06 1.82 5.47 -17.82 -0.10 1.72 16 18 N -0.91 -27.38 13.96 55.43 0.77 -26.61 16 19 Si 0.88 21.35 27.47 -169.99 -4.67 16.68 16 20 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.27 -6.26 6.54 56.52 0.37 -5.89 16 23 C 0.02 0.25 5.01 -3.69 -0.02 0.23 16 24 C 0.13 1.25 6.46 -3.60 -0.02 1.23 16 25 H 0.08 0.37 8.14 -51.93 -0.42 -0.05 16 26 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.13 0.68 8.14 -51.92 -0.42 0.26 16 29 H 0.13 0.65 8.14 -51.92 -0.42 0.23 16 30 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.09 0.69 7.19 -51.92 -0.37 0.32 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.09 0.83 7.87 -51.93 -0.41 0.42 16 34 H 0.06 0.95 7.59 -51.93 -0.39 0.56 16 35 H 0.03 0.49 7.81 -51.93 -0.41 0.09 16 36 H 0.05 0.70 6.20 -51.93 -0.32 0.38 16 37 H 0.07 1.46 6.33 -51.93 -0.33 1.13 16 38 H 0.04 0.58 7.71 -51.93 -0.40 0.18 16 39 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 40 H 0.06 1.27 6.49 -51.93 -0.34 0.93 16 41 H 0.05 0.77 7.63 -51.93 -0.40 0.37 16 42 H 0.01 0.31 7.20 -51.93 -0.37 -0.07 16 43 H 0.01 0.15 7.57 -51.93 -0.39 -0.25 16 44 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 45 H 0.03 0.30 8.14 -51.93 -0.42 -0.12 16 46 H 0.11 1.28 4.13 -51.93 -0.21 1.06 16 47 H 0.09 0.77 7.19 -51.93 -0.37 0.39 16 48 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 371.21 15.07 5.59 5.59 Total: -1.00 -33.33 371.21 -9.93 -43.26 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.43 Total: -3.13 kcal Atomic # 6 Polarization: -17.91 SS G_CDS: 0.52 Total: -17.38 kcal Atomic # 7 Polarization: -43.43 SS G_CDS: -0.43 Total: -43.86 kcal Atomic # 8 Polarization: -23.57 SS G_CDS: -1.93 Total: -25.50 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -4.67 Total: 16.68 kcal Atomic # 16 Polarization: 24.93 SS G_CDS: -0.58 Total: 24.35 kcal Total LS contribution 5.59 Total: 5.59 kcal Total: -33.33 -9.93 -43.26 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000127281832.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.301 kcal (2) G-P(sol) polarization free energy of solvation -33.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.931 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.257 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds