Wall clock time and date at job start Tue Mar 31 2020 12:27:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46496 * 120.00329 * 2 1 4 4 C 1.50702 * 109.47250 * 274.78951 * 3 2 1 5 5 H 1.07997 * 119.99909 * 4.59666 * 4 3 2 6 6 C 1.37875 * 119.99963 * 184.60255 * 4 3 2 7 7 N 1.31515 * 120.00034 * 5.49090 * 6 4 3 8 8 Si 1.86796 * 119.99833 * 185.49506 * 6 4 3 9 9 H 1.48498 * 109.47389 * 64.99747 * 8 6 4 10 10 H 1.48506 * 109.47201 * 184.99209 * 8 6 4 11 11 H 1.48500 * 109.47422 * 304.99423 * 8 6 4 12 12 S 1.65609 * 119.99849 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40233 * 162.61473 * 12 2 1 14 14 O 1.42097 * 106.40265 * 29.69153 * 12 2 1 15 15 N 1.65599 * 107.21809 * 276.15303 * 12 2 1 16 16 C 1.46501 * 119.99916 * 273.52531 * 15 12 2 17 17 C 1.46499 * 120.00045 * 93.24871 * 15 12 2 18 18 C 1.53016 * 109.47026 * 239.42622 * 17 15 12 19 19 C 1.52997 * 109.45859 * 164.04928 * 18 17 15 20 20 C 1.52979 * 109.50732 * 315.98389 * 19 18 17 21 21 C 1.53000 * 109.47197 * 112.94020 * 20 19 18 22 22 C 1.53006 * 109.43095 * 284.04386 * 21 20 19 23 23 C 1.52985 * 109.48714 * 75.95703 * 22 21 20 24 24 C 1.52988 * 109.50670 * 247.06532 * 23 22 21 25 25 H 1.09003 * 109.47273 * 270.00095 * 1 2 3 26 26 H 1.08999 * 109.47093 * 29.99776 * 1 2 3 27 27 H 1.09004 * 109.47305 * 149.99869 * 1 2 3 28 28 H 1.09001 * 109.47288 * 34.78942 * 3 2 1 29 29 H 1.09006 * 109.47361 * 154.78951 * 3 2 1 30 30 H 0.97008 * 120.00071 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46885 * 269.72247 * 16 15 12 32 32 H 1.09003 * 109.47087 * 29.72500 * 16 15 12 33 33 H 1.08998 * 109.47165 * 149.72225 * 16 15 12 34 34 H 1.08995 * 109.47267 * 359.42427 * 17 15 12 35 35 H 1.09003 * 109.47284 * 284.04052 * 18 17 15 36 36 H 1.08994 * 109.47693 * 44.04983 * 18 17 15 37 37 H 1.09006 * 109.46351 * 195.97637 * 19 18 17 38 38 H 1.08991 * 109.45913 * 75.99509 * 19 18 17 39 39 H 1.08996 * 109.47376 * 352.93857 * 20 19 18 40 40 H 1.09004 * 109.46994 * 232.94015 * 20 19 18 41 41 H 1.09002 * 109.48248 * 164.05031 * 21 20 19 42 42 H 1.09004 * 109.48779 * 44.03212 * 21 20 19 43 43 H 1.09000 * 109.46834 * 315.95165 * 22 21 20 44 44 H 1.08999 * 109.46778 * 195.96108 * 22 21 20 45 45 H 1.09007 * 109.46479 * 127.05338 * 23 22 21 46 46 H 1.09000 * 109.45858 * 7.07724 * 23 22 21 47 47 H 1.09001 * 109.47485 * 284.01525 * 24 23 22 48 48 H 1.08999 * 109.47774 * 164.01107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3460 1.7630 -1.4159 5 1 1.8725 1.2293 -2.2266 6 6 3.0864 2.8966 -1.6762 7 7 3.7514 3.4848 -0.7059 8 14 3.1447 3.5970 -3.4069 9 1 1.7916 4.0692 -3.7957 10 1 4.0971 4.7357 -3.4482 11 1 3.5919 2.5430 -4.3526 12 16 2.2929 -1.4342 -0.0006 13 8 3.6202 -1.1312 -0.4078 14 8 1.4680 -2.3735 -0.6763 15 7 2.3912 -1.9442 1.5718 16 6 3.4856 -1.4771 2.4263 17 6 1.3803 -2.8577 2.1101 18 6 0.6841 -2.2015 3.3043 19 6 -0.6108 -2.9545 3.6162 20 6 -1.3538 -3.2546 2.3131 21 6 -1.3624 -4.7646 2.0670 22 6 0.0158 -5.2074 1.5715 23 6 0.9939 -5.2423 2.7473 24 6 2.0541 -4.1549 2.5622 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6483 2.0053 0.5863 29 1 3.1844 1.1184 0.4377 30 1 4.2721 4.2826 -0.8890 31 1 4.3277 -2.1646 2.3466 32 1 3.7970 -0.4825 2.1068 33 1 3.1465 -1.4365 3.4614 34 1 0.6441 -3.0808 1.3379 35 1 1.3423 -2.2356 4.1724 36 1 0.4523 -1.1639 3.0646 37 1 -1.2410 -2.3417 4.2608 38 1 -0.3738 -3.8899 4.1229 39 1 -0.8517 -2.7544 1.4850 40 1 -2.3793 -2.8928 2.3880 41 1 -2.1139 -5.0062 1.3152 42 1 -1.5983 -5.2832 2.9963 43 1 0.3752 -4.5038 0.8206 44 1 -0.0587 -6.2018 1.1313 45 1 1.4778 -6.2182 2.7884 46 1 0.4514 -5.0665 3.6762 47 1 2.7731 -4.4732 1.8073 48 1 2.5703 -3.9861 3.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000130974559.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:05 Heat of formation + Delta-G solvation = -76.241607 kcal Electronic energy + Delta-G solvation = -27675.622327 eV Core-core repulsion = 24085.414563 eV Total energy + Delta-G solvation = -3590.207764 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.76858 -36.59882 -35.60305 -35.45244 -35.09102 -32.92261 -32.41641 -31.53598 -27.78394 -27.05973 -26.00309 -25.13123 -24.85294 -22.24003 -21.75789 -20.82334 -19.50692 -18.38010 -17.43161 -16.71010 -16.36191 -16.27588 -15.25345 -14.82752 -14.55450 -14.31590 -14.19741 -14.09426 -13.91497 -13.47526 -13.35456 -13.20669 -12.66880 -12.37998 -12.28116 -12.14141 -12.06696 -11.92848 -11.58340 -11.50779 -11.32959 -11.23069 -11.14159 -11.12752 -11.04452 -10.89281 -10.82769 -10.68182 -10.48238 -10.43999 -10.03000 -9.93079 -9.82217 -9.75293 -8.77220 -8.41633 -8.01786 -6.05397 -4.09045 1.23568 3.34055 3.37806 3.41976 3.51208 4.10837 4.45128 4.49673 4.70190 4.75582 4.92349 4.99090 5.02141 5.09934 5.12354 5.18613 5.23210 5.28494 5.34475 5.57893 5.62044 5.66440 5.74739 5.76409 5.79707 5.87334 5.91062 5.94222 5.97179 6.01683 6.07019 6.08382 6.11238 6.16721 6.21648 6.27174 6.40794 6.45899 6.52497 6.57802 6.88715 7.24150 7.42802 7.64271 7.92571 8.22143 8.92808 9.55781 11.03161 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.004140 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.032340 B = 6762.468966 C = 6950.215218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.095 3.905 2 N -0.996 5.996 3 C 0.256 3.744 4 C -0.533 4.533 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.274 1.274 12 S 2.777 3.223 13 O -0.962 6.962 14 O -0.997 6.997 15 N -1.012 6.012 16 C 0.096 3.904 17 C 0.126 3.874 18 C -0.130 4.130 19 C -0.124 4.124 20 C -0.136 4.136 21 C -0.117 4.117 22 C -0.140 4.140 23 C -0.124 4.124 24 C -0.125 4.125 25 H 0.038 0.962 26 H 0.076 0.924 27 H 0.063 0.937 28 H 0.030 0.970 29 H 0.043 0.957 30 H 0.264 0.736 31 H 0.051 0.949 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.121 0.879 35 H 0.065 0.935 36 H 0.070 0.930 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.074 0.926 40 H 0.061 0.939 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.083 0.917 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.074 0.926 47 H 0.065 0.935 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.452 -14.632 11.637 20.517 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.839 5.839 3 C 0.134 3.866 4 C -0.572 4.572 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.724 3.276 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.200 1.200 12 S 2.786 3.214 13 O -0.945 6.945 14 O -0.981 6.981 15 N -0.849 5.849 16 C -0.049 4.049 17 C 0.021 3.979 18 C -0.169 4.169 19 C -0.162 4.162 20 C -0.173 4.173 21 C -0.155 4.155 22 C -0.177 4.177 23 C -0.162 4.162 24 C -0.164 4.164 25 H 0.056 0.944 26 H 0.095 0.905 27 H 0.081 0.919 28 H 0.048 0.952 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.092 0.908 33 H 0.084 0.916 34 H 0.138 0.862 35 H 0.084 0.916 36 H 0.088 0.912 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.093 0.907 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.080 0.920 43 H 0.101 0.899 44 H 0.078 0.922 45 H 0.078 0.922 46 H 0.092 0.908 47 H 0.084 0.916 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.940 -14.889 10.918 20.098 hybrid contribution 0.029 0.791 -0.520 0.947 sum -7.911 -14.098 10.398 19.221 Atomic orbital electron populations 1.21339 0.80465 1.03318 1.00028 1.57684 1.14148 1.23375 1.88652 1.19073 0.91192 0.78740 0.97589 1.21460 1.32127 1.10393 0.93262 0.92257 1.24924 0.94648 0.96857 0.97430 1.69918 1.30498 1.20575 1.32221 0.86587 0.77871 0.78602 0.84590 1.20214 1.21125 1.19975 1.02141 0.73604 0.72747 0.72864 1.93621 1.36679 1.84391 1.79820 1.93493 1.70314 1.62491 1.71786 1.58314 1.35269 1.59260 1.32079 1.21361 0.88562 0.99839 0.95187 1.21583 0.89979 0.88553 0.97805 1.22017 0.96576 1.00085 0.98215 1.21833 0.96037 1.00764 0.97577 1.21895 1.00524 0.96457 0.98418 1.21691 0.97054 0.95799 1.00913 1.21940 0.95113 1.02008 0.98677 1.21835 0.96975 0.98262 0.99127 1.21949 0.98171 0.94573 1.01691 0.94359 0.90475 0.91854 0.95226 0.93862 0.92631 0.93006 0.90800 0.91562 0.86210 0.91600 0.91158 0.92074 0.90842 0.90734 0.92019 0.92158 0.91993 0.89869 0.92208 0.92210 0.90813 0.91645 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.64 10.70 59.84 0.64 2.28 16 2 N -1.00 -21.00 3.23 -123.05 -0.40 -21.39 16 3 C 0.26 6.48 5.11 -5.19 -0.03 6.45 16 4 C -0.53 -15.13 9.38 -34.44 -0.32 -15.45 16 5 H 0.06 1.68 7.82 -52.49 -0.41 1.27 16 6 C 0.06 1.83 5.45 -17.82 -0.10 1.73 16 7 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 8 Si 0.90 21.93 29.54 -169.99 -5.02 16.91 16 9 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 12 S 2.78 57.09 6.01 -107.50 -0.65 56.44 16 13 O -0.96 -23.82 16.10 -57.17 -0.92 -24.75 16 14 O -1.00 -20.95 15.35 -57.17 -0.88 -21.83 16 15 N -1.01 -15.86 3.13 -114.60 -0.36 -16.21 16 16 C 0.10 1.35 9.68 59.85 0.58 1.93 16 17 C 0.13 1.63 1.92 -67.92 -0.13 1.50 16 18 C -0.13 -1.40 4.58 -26.72 -0.12 -1.52 16 19 C -0.12 -1.12 5.48 -26.74 -0.15 -1.27 16 20 C -0.14 -1.32 5.47 -26.74 -0.15 -1.47 16 21 C -0.12 -1.06 5.59 -26.73 -0.15 -1.21 16 22 C -0.14 -1.45 5.47 -26.74 -0.15 -1.60 16 23 C -0.12 -1.16 5.48 -26.74 -0.15 -1.31 16 24 C -0.12 -1.39 4.82 -26.73 -0.13 -1.52 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.08 1.35 8.07 -51.93 -0.42 0.93 16 27 H 0.06 1.03 7.08 -51.93 -0.37 0.66 16 28 H 0.03 0.75 8.11 -51.93 -0.42 0.33 16 29 H 0.04 1.17 7.41 -51.93 -0.38 0.79 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 32 H 0.07 1.17 7.84 -51.93 -0.41 0.77 16 33 H 0.07 0.74 6.76 -51.93 -0.35 0.39 16 34 H 0.12 1.67 1.52 -51.93 -0.08 1.59 16 35 H 0.07 0.64 7.06 -51.93 -0.37 0.27 16 36 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.07 0.59 4.69 -51.93 -0.24 0.35 16 39 H 0.07 0.87 5.47 -51.93 -0.28 0.59 16 40 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.48 7.47 -51.93 -0.39 0.10 16 43 H 0.08 1.08 5.47 -51.93 -0.28 0.79 16 44 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 45 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 46 H 0.07 0.60 4.69 -51.93 -0.24 0.36 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.06 0.64 7.82 -51.93 -0.41 0.24 16 LS Contribution 366.01 15.07 5.52 5.52 Total: -1.00 -32.77 366.01 -10.31 -43.08 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.00 Total: -0.83 kcal Atomic # 6 Polarization: -11.11 SS G_CDS: -0.34 Total: -11.45 kcal Atomic # 7 Polarization: -63.08 SS G_CDS: -0.02 Total: -63.10 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -1.80 Total: -46.57 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Atomic # 16 Polarization: 57.09 SS G_CDS: -0.65 Total: 56.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -32.77 -10.31 -43.08 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130974559.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.161 kcal (2) G-P(sol) polarization free energy of solvation -32.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.310 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.242 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds