Wall clock time and date at job start Tue Mar 31 2020 12:27:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46493 * 1 3 3 C 1.46496 * 120.00329 * 2 1 4 4 C 1.50702 * 109.47250 * 274.78951 * 3 2 1 5 5 H 1.07997 * 119.99909 * 4.59666 * 4 3 2 6 6 C 1.37875 * 119.99963 * 184.60255 * 4 3 2 7 7 N 1.31515 * 120.00034 * 5.49090 * 6 4 3 8 8 Si 1.86796 * 119.99833 * 185.49506 * 6 4 3 9 9 H 1.48498 * 109.47389 * 64.99747 * 8 6 4 10 10 H 1.48506 * 109.47201 * 184.99209 * 8 6 4 11 11 H 1.48500 * 109.47422 * 304.99423 * 8 6 4 12 12 S 1.65609 * 119.99849 * 180.02562 * 2 1 3 13 13 O 1.42097 * 106.40233 * 162.61473 * 12 2 1 14 14 O 1.42097 * 106.40265 * 29.69153 * 12 2 1 15 15 N 1.65599 * 107.21809 * 276.15303 * 12 2 1 16 16 C 1.46501 * 119.99916 * 273.52531 * 15 12 2 17 17 C 1.46499 * 120.00045 * 93.24871 * 15 12 2 18 18 C 1.53016 * 109.47026 * 239.42622 * 17 15 12 19 19 C 1.52997 * 109.45859 * 164.04928 * 18 17 15 20 20 C 1.52979 * 109.50732 * 315.98389 * 19 18 17 21 21 C 1.53000 * 109.47197 * 112.94020 * 20 19 18 22 22 C 1.53006 * 109.43095 * 284.04386 * 21 20 19 23 23 C 1.52985 * 109.48714 * 75.95703 * 22 21 20 24 24 C 1.52988 * 109.50670 * 247.06532 * 23 22 21 25 25 H 1.09003 * 109.47273 * 270.00095 * 1 2 3 26 26 H 1.08999 * 109.47093 * 29.99776 * 1 2 3 27 27 H 1.09004 * 109.47305 * 149.99869 * 1 2 3 28 28 H 1.09001 * 109.47288 * 34.78942 * 3 2 1 29 29 H 1.09006 * 109.47361 * 154.78951 * 3 2 1 30 30 H 0.97008 * 120.00071 * 180.02562 * 7 6 4 31 31 H 1.08997 * 109.46885 * 269.72247 * 16 15 12 32 32 H 1.09003 * 109.47087 * 29.72500 * 16 15 12 33 33 H 1.08998 * 109.47165 * 149.72225 * 16 15 12 34 34 H 1.08995 * 109.47267 * 359.42427 * 17 15 12 35 35 H 1.09003 * 109.47284 * 284.04052 * 18 17 15 36 36 H 1.08994 * 109.47693 * 44.04983 * 18 17 15 37 37 H 1.09006 * 109.46351 * 195.97637 * 19 18 17 38 38 H 1.08991 * 109.45913 * 75.99509 * 19 18 17 39 39 H 1.08996 * 109.47376 * 352.93857 * 20 19 18 40 40 H 1.09004 * 109.46994 * 232.94015 * 20 19 18 41 41 H 1.09002 * 109.48248 * 164.05031 * 21 20 19 42 42 H 1.09004 * 109.48779 * 44.03212 * 21 20 19 43 43 H 1.09000 * 109.46834 * 315.95165 * 22 21 20 44 44 H 1.08999 * 109.46778 * 195.96108 * 22 21 20 45 45 H 1.09007 * 109.46479 * 127.05338 * 23 22 21 46 46 H 1.09000 * 109.45858 * 7.07724 * 23 22 21 47 47 H 1.09001 * 109.47485 * 284.01525 * 24 23 22 48 48 H 1.08999 * 109.47774 * 164.01107 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3460 1.7630 -1.4159 5 1 1.8725 1.2293 -2.2266 6 6 3.0864 2.8966 -1.6762 7 7 3.7514 3.4848 -0.7059 8 14 3.1447 3.5970 -3.4069 9 1 1.7916 4.0692 -3.7957 10 1 4.0971 4.7357 -3.4482 11 1 3.5919 2.5430 -4.3526 12 16 2.2929 -1.4342 -0.0006 13 8 3.6202 -1.1312 -0.4078 14 8 1.4680 -2.3735 -0.6763 15 7 2.3912 -1.9442 1.5718 16 6 3.4856 -1.4771 2.4263 17 6 1.3803 -2.8577 2.1101 18 6 0.6841 -2.2015 3.3043 19 6 -0.6108 -2.9545 3.6162 20 6 -1.3538 -3.2546 2.3131 21 6 -1.3624 -4.7646 2.0670 22 6 0.0158 -5.2074 1.5715 23 6 0.9939 -5.2423 2.7473 24 6 2.0541 -4.1549 2.5622 25 1 -0.3634 0.0000 1.0277 26 1 -0.3633 0.8900 -0.5138 27 1 -0.3634 -0.8900 -0.5139 28 1 1.6483 2.0053 0.5863 29 1 3.1844 1.1184 0.4377 30 1 4.2721 4.2826 -0.8890 31 1 4.3277 -2.1646 2.3466 32 1 3.7970 -0.4825 2.1068 33 1 3.1465 -1.4365 3.4614 34 1 0.6441 -3.0808 1.3379 35 1 1.3423 -2.2356 4.1724 36 1 0.4523 -1.1639 3.0646 37 1 -1.2410 -2.3417 4.2608 38 1 -0.3738 -3.8899 4.1229 39 1 -0.8517 -2.7544 1.4850 40 1 -2.3793 -2.8928 2.3880 41 1 -2.1139 -5.0062 1.3152 42 1 -1.5983 -5.2832 2.9963 43 1 0.3752 -4.5038 0.8206 44 1 -0.0587 -6.2018 1.1313 45 1 1.4778 -6.2182 2.7884 46 1 0.4514 -5.0665 3.6762 47 1 2.7731 -4.4732 1.8073 48 1 2.5703 -3.9861 3.5072 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000130974559.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:04 Heat of formation + Delta-G solvation = -97.604831 kcal Electronic energy + Delta-G solvation = -27676.548706 eV Core-core repulsion = 24085.414563 eV Total energy + Delta-G solvation = -3591.134143 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65115 -38.32793 -37.22764 -36.86506 -36.65130 -34.52811 -33.68038 -32.46862 -29.70030 -28.10749 -26.84645 -26.78933 -25.95870 -24.18382 -22.59158 -21.59258 -20.62345 -19.63704 -19.04862 -18.45540 -18.29376 -17.54176 -16.79403 -16.26646 -15.87328 -15.38200 -15.18420 -15.06586 -14.96318 -14.91659 -14.87144 -14.14962 -14.07821 -13.91390 -13.74220 -13.57819 -13.35318 -13.23085 -13.07935 -13.02438 -12.95705 -12.56092 -12.50294 -12.41497 -12.27651 -12.18715 -12.03971 -11.95677 -11.88170 -11.80520 -11.62363 -11.23038 -10.79836 -10.61439 -10.56771 -9.96136 -9.76550 -8.22122 -6.34285 -0.36717 1.37874 1.40912 1.48580 2.02387 2.38281 2.56123 3.08054 3.35566 3.58878 3.94100 3.95094 4.01517 4.12837 4.22437 4.23346 4.32409 4.32833 4.41280 4.42667 4.62646 4.64562 4.72036 4.76561 4.80268 4.87348 4.93000 5.01137 5.04647 5.10188 5.11906 5.14425 5.16344 5.19899 5.29010 5.32768 5.39365 5.41050 5.45010 5.55832 5.66123 5.67625 5.72172 5.73563 5.97676 6.09042 6.73294 7.34345 8.85327 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.023583 B = 0.004140 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1187.032340 B = 6762.468966 C = 6950.215218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -1.003 6.003 3 C 0.272 3.728 4 C -0.557 4.557 5 H 0.050 0.950 6 C 0.014 3.986 7 N -0.921 5.921 8 Si 0.956 3.044 9 H -0.262 1.262 10 H -0.275 1.275 11 H -0.278 1.278 12 S 2.786 3.214 13 O -1.012 7.012 14 O -1.007 7.007 15 N -1.001 6.001 16 C 0.092 3.908 17 C 0.117 3.883 18 C -0.127 4.127 19 C -0.118 4.118 20 C -0.139 4.139 21 C -0.114 4.114 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.124 4.124 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.027 0.973 29 H 0.019 0.981 30 H 0.268 0.732 31 H 0.061 0.939 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.111 0.889 35 H 0.082 0.918 36 H 0.058 0.942 37 H 0.074 0.926 38 H 0.089 0.911 39 H 0.050 0.950 40 H 0.071 0.929 41 H 0.059 0.941 42 H 0.082 0.918 43 H 0.052 0.948 44 H 0.064 0.936 45 H 0.071 0.929 46 H 0.093 0.907 47 H 0.046 0.954 48 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.814 -15.642 13.310 22.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 N -0.845 5.845 3 C 0.148 3.852 4 C -0.596 4.596 5 H 0.069 0.931 6 C -0.186 4.186 7 N -0.561 5.561 8 Si 0.781 3.219 9 H -0.186 1.186 10 H -0.200 1.200 11 H -0.203 1.203 12 S 2.796 3.204 13 O -0.995 6.995 14 O -0.991 6.991 15 N -0.842 5.842 16 C -0.053 4.053 17 C 0.012 3.988 18 C -0.166 4.166 19 C -0.156 4.156 20 C -0.177 4.177 21 C -0.152 4.152 22 C -0.181 4.181 23 C -0.156 4.156 24 C -0.163 4.163 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.090 0.910 28 H 0.045 0.955 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.080 0.920 32 H 0.067 0.933 33 H 0.121 0.879 34 H 0.128 0.872 35 H 0.101 0.899 36 H 0.076 0.924 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.069 0.931 40 H 0.089 0.911 41 H 0.077 0.923 42 H 0.101 0.899 43 H 0.070 0.930 44 H 0.083 0.917 45 H 0.090 0.910 46 H 0.112 0.888 47 H 0.065 0.935 48 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -9.334 -15.906 12.583 22.326 hybrid contribution 0.425 1.016 -0.994 1.483 sum -8.909 -14.890 11.589 20.866 Atomic orbital electron populations 1.21544 0.78302 1.03425 1.02229 1.57569 1.15603 1.21978 1.89309 1.18629 0.90459 0.80213 0.95879 1.21808 1.32400 1.10897 0.94465 0.93137 1.25758 0.94205 0.97158 1.01476 1.70013 1.30942 1.20984 1.34121 0.85639 0.78727 0.77921 0.79632 1.18622 1.19997 1.20328 1.01594 0.72400 0.72446 0.73977 1.93548 1.39294 1.85094 1.81608 1.93468 1.70211 1.62415 1.73017 1.57945 1.36424 1.59337 1.30507 1.21525 0.88569 0.98704 0.96531 1.21929 0.89361 0.88967 0.98520 1.22010 0.97654 0.99395 0.97529 1.21823 0.95002 1.01470 0.97310 1.21916 1.00954 0.96740 0.98057 1.21692 0.96132 0.95509 1.01832 1.21947 0.96213 1.01421 0.98508 1.21833 0.96330 0.98081 0.99373 1.21970 0.98431 0.94038 1.01904 0.91100 0.91020 0.91042 0.95532 0.96324 0.92289 0.92029 0.93265 0.87925 0.87150 0.89928 0.92364 0.90741 0.89272 0.93112 0.91053 0.92255 0.89903 0.92989 0.91740 0.91049 0.88846 0.93488 0.89748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 3.12 10.70 127.77 1.37 4.48 16 2 N -1.00 -43.31 3.23 -543.23 -1.75 -45.07 16 3 C 0.27 14.22 5.11 85.63 0.44 14.65 16 4 C -0.56 -32.40 9.38 25.60 0.24 -32.16 16 5 H 0.05 2.95 7.82 -2.91 -0.02 2.92 16 6 C 0.01 0.81 5.45 84.65 0.46 1.27 16 7 N -0.92 -54.96 13.29 21.45 0.28 -54.68 16 8 Si 0.96 45.23 29.54 68.60 2.03 47.26 16 9 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 11 H -0.28 -13.20 7.11 99.48 0.71 -12.49 16 12 S 2.79 118.07 6.01 -56.49 -0.34 117.73 16 13 O -1.01 -52.51 16.10 -128.00 -2.06 -54.58 16 14 O -1.01 -43.50 15.35 -128.00 -1.96 -45.46 16 15 N -1.00 -31.28 3.13 -516.48 -1.62 -32.90 16 16 C 0.09 2.54 9.68 127.77 1.24 3.78 16 17 C 0.12 2.85 1.92 45.00 0.09 2.94 16 18 C -0.13 -2.40 4.58 30.60 0.14 -2.26 16 19 C -0.12 -1.73 5.48 30.59 0.17 -1.56 16 20 C -0.14 -2.41 5.47 30.59 0.17 -2.24 16 21 C -0.11 -1.80 5.59 30.60 0.17 -1.63 16 22 C -0.14 -2.75 5.47 30.59 0.17 -2.58 16 23 C -0.12 -1.89 5.48 30.59 0.17 -1.72 16 24 C -0.12 -2.52 4.82 30.59 0.15 -2.37 16 25 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 26 H 0.07 2.53 8.07 -2.39 -0.02 2.51 16 27 H 0.07 2.33 7.08 -2.39 -0.02 2.31 16 28 H 0.03 1.38 8.11 -2.39 -0.02 1.37 16 29 H 0.02 1.07 7.41 -2.38 -0.02 1.05 16 30 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 31 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 32 H 0.05 1.61 7.84 -2.39 -0.02 1.60 16 33 H 0.10 2.06 6.76 -2.39 -0.02 2.04 16 34 H 0.11 3.02 1.52 -2.39 0.00 3.02 16 35 H 0.08 1.29 7.06 -2.39 -0.02 1.27 16 36 H 0.06 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 0.94 8.14 -2.38 -0.02 0.92 16 38 H 0.09 1.03 4.69 -2.39 -0.01 1.02 16 39 H 0.05 1.14 5.47 -2.39 -0.01 1.12 16 40 H 0.07 1.08 8.14 -2.38 -0.02 1.06 16 41 H 0.06 0.94 8.14 -2.39 -0.02 0.92 16 42 H 0.08 0.98 7.47 -2.39 -0.02 0.96 16 43 H 0.05 1.34 5.47 -2.39 -0.01 1.33 16 44 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 45 H 0.07 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.09 1.13 4.69 -2.39 -0.01 1.12 16 47 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 48 H 0.08 1.39 7.82 -2.39 -0.02 1.37 16 Total: -1.00 -72.69 366.01 0.48 -72.21 By element: Atomic # 1 Polarization: 13.94 SS G_CDS: 0.94 Total: 14.87 kcal Atomic # 6 Polarization: -24.36 SS G_CDS: 4.96 Total: -19.40 kcal Atomic # 7 Polarization: -129.56 SS G_CDS: -3.08 Total: -132.64 kcal Atomic # 8 Polarization: -96.01 SS G_CDS: -4.03 Total: -100.04 kcal Atomic # 14 Polarization: 45.23 SS G_CDS: 2.03 Total: 47.26 kcal Atomic # 16 Polarization: 118.07 SS G_CDS: -0.34 Total: 117.73 kcal Total: -72.69 0.48 -72.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000130974559.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.393 kcal (2) G-P(sol) polarization free energy of solvation -72.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.081 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds