Wall clock time and date at job start Tue Mar 31 2020 12:26:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00244 * 2 1 4 4 C 1.46901 * 111.00083 * 123.95625 * 2 1 3 5 5 C 1.52996 * 109.47140 * 66.04499 * 4 2 1 6 6 N 1.46502 * 109.47205 * 174.25785 * 5 4 2 7 7 C 1.46501 * 119.99793 * 86.36300 * 6 5 4 8 8 C 1.54257 * 110.03267 * 50.64146 * 7 6 5 9 9 C 1.54971 * 104.15709 * 217.13446 * 8 7 6 10 10 C 1.54885 * 102.78054 * 37.88654 * 9 8 7 11 11 C 1.53872 * 110.03408 * 293.41743 * 7 6 5 12 12 S 1.65597 * 119.99921 * 266.36883 * 6 5 4 13 13 O 1.42105 * 104.27720 * 206.06954 * 12 6 5 14 14 O 1.42100 * 104.27503 * 333.92282 * 12 6 5 15 15 C 1.81398 * 104.45436 * 89.99778 * 12 6 5 16 16 C 1.52999 * 109.47429 * 180.02562 * 15 12 6 17 17 C 1.50696 * 109.47290 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99694 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00546 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 59.99461 * 21 19 17 23 23 H 1.48495 * 109.47211 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46976 * 299.99917 * 21 19 17 25 25 H 1.09002 * 109.46799 * 296.04644 * 1 2 3 26 26 H 1.08994 * 109.46821 * 56.04266 * 1 2 3 27 27 H 1.08994 * 109.47179 * 176.04265 * 1 2 3 28 28 H 1.08997 * 109.47391 * 183.95098 * 3 2 1 29 29 H 1.08999 * 109.47279 * 303.95492 * 3 2 1 30 30 H 1.09005 * 109.46877 * 63.95351 * 3 2 1 31 31 H 1.09006 * 109.46930 * 306.04213 * 4 2 1 32 32 H 1.09001 * 109.46894 * 186.05014 * 4 2 1 33 33 H 1.08998 * 109.46993 * 54.25942 * 5 4 2 34 34 H 1.09002 * 109.47208 * 294.25538 * 5 4 2 35 35 H 1.09008 * 110.01165 * 172.03463 * 7 6 5 36 36 H 1.09000 * 110.48890 * 335.77659 * 8 7 6 37 37 H 1.08998 * 110.48783 * 98.42597 * 8 7 6 38 38 H 1.09000 * 110.71658 * 279.57248 * 9 8 7 39 39 H 1.09005 * 110.92102 * 156.29557 * 9 8 7 40 40 H 1.08992 * 110.48781 * 203.40664 * 10 9 8 41 41 H 1.09005 * 110.59744 * 80.81382 * 10 9 8 42 42 H 1.09001 * 110.03630 * 238.57330 * 11 7 6 43 43 H 1.09004 * 110.03400 * 0.02562 * 11 7 6 44 44 H 1.09007 * 109.46753 * 300.00151 * 15 12 6 45 45 H 1.08996 * 109.47223 * 59.99868 * 15 12 6 46 46 H 1.08999 * 109.46673 * 300.00198 * 16 15 12 47 47 H 1.09004 * 109.46885 * 59.99458 * 16 15 12 48 48 H 0.96995 * 120.00304 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.2712 -3.0264 2.0299 7 6 1.6077 -3.1841 3.3265 8 6 0.1529 -3.6542 3.1219 9 6 -0.6444 -2.9099 4.2228 10 6 0.0381 -1.5200 4.2596 11 6 1.5351 -1.8279 4.0499 12 16 3.7443 -3.7338 1.7620 13 8 3.7680 -4.8416 2.6518 14 8 3.7911 -3.9237 0.3545 15 6 4.9493 -2.4790 2.2756 16 6 6.3663 -3.0195 2.0731 17 6 7.3674 -1.9768 2.4992 18 1 7.0270 -1.0237 2.8762 19 6 8.7178 -2.2392 2.4066 20 7 9.1322 -3.3996 1.9471 21 14 9.9587 -0.9464 2.9341 22 1 9.7540 -0.6198 4.3682 23 1 11.3339 -1.4711 2.7377 24 1 9.7745 0.2793 2.1161 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0251 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5612 -0.3872 2.0628 32 1 3.0798 -0.6611 1.1756 33 1 1.9780 -2.5944 -0.0014 34 1 0.5497 -2.3597 1.0345 35 1 2.1506 -3.9048 3.9381 36 1 -0.2050 -3.3682 2.1328 37 1 0.0777 -4.7329 3.2587 38 1 -0.5414 -3.4163 5.1826 39 1 -1.6949 -2.8172 3.9474 40 1 -0.1213 -1.0422 5.2262 41 1 -0.3375 -0.8870 3.4555 42 1 2.0419 -1.8907 5.0129 43 1 1.9931 -1.0523 3.4360 44 1 4.8149 -1.5791 1.6753 45 1 4.7984 -2.2396 3.3281 46 1 6.5009 -3.9196 2.6730 47 1 6.5169 -3.2587 1.0204 48 1 10.0822 -3.5843 1.8823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000163782994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:20 Heat of formation + Delta-G solvation = -74.406428 kcal Electronic energy + Delta-G solvation = -26818.245830 eV Core-core repulsion = 23228.117645 eV Total energy + Delta-G solvation = -3590.128185 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.30656 -37.43896 -36.55356 -35.42794 -34.39355 -33.88009 -31.16170 -29.74335 -28.91442 -27.73429 -27.04061 -25.60691 -24.07960 -21.80863 -21.18836 -20.65250 -20.09255 -18.62100 -17.78615 -16.65963 -16.42110 -15.60716 -15.50106 -15.34097 -15.22386 -14.98403 -14.76712 -14.54884 -13.79274 -13.51668 -13.41591 -13.15442 -12.91994 -12.59453 -12.42412 -12.36172 -11.93344 -11.79524 -11.77331 -11.70081 -11.54392 -11.41383 -11.30755 -11.22458 -11.17906 -11.05492 -10.99008 -10.89327 -10.55160 -10.43753 -10.41289 -10.31797 -9.74433 -9.31965 -8.80332 -8.49095 -8.43868 -6.11166 -4.16790 0.77712 2.96670 3.27364 3.32307 3.33948 3.85679 4.28922 4.37904 4.41971 4.50269 4.58726 4.72588 4.81544 4.96374 5.04585 5.17010 5.19604 5.23764 5.27157 5.33865 5.38590 5.39482 5.42996 5.47756 5.48992 5.51989 5.62894 5.71209 5.73439 5.74529 5.79506 5.82546 5.86948 5.90230 6.05543 6.16632 6.19419 6.35748 6.51276 6.74514 6.85894 6.91255 7.31204 7.37666 7.81271 8.18775 8.86113 9.47759 10.99884 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.004297 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.752628 B = 6515.311420 C = 7307.639417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.543 5.543 3 C 0.024 3.976 4 C 0.022 3.978 5 C 0.116 3.884 6 N -0.997 5.997 7 C 0.141 3.859 8 C -0.133 4.133 9 C -0.123 4.123 10 C -0.120 4.120 11 C -0.154 4.154 12 S 2.586 3.414 13 O -0.965 6.965 14 O -0.960 6.960 15 C -0.590 4.590 16 C 0.029 3.971 17 C -0.520 4.520 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.276 1.276 23 H -0.285 1.285 24 H -0.275 1.275 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.068 0.932 30 H 0.024 0.976 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.103 0.897 34 H 0.081 0.919 35 H 0.107 0.893 36 H 0.076 0.924 37 H 0.071 0.929 38 H 0.069 0.931 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.072 0.928 43 H 0.082 0.918 44 H 0.118 0.882 45 H 0.118 0.882 46 H 0.032 0.968 47 H 0.033 0.967 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.350 6.639 1.802 22.431 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.268 5.268 3 C -0.124 4.124 4 C -0.107 4.107 5 C -0.010 4.010 6 N -0.831 5.831 7 C 0.035 3.965 8 C -0.172 4.172 9 C -0.161 4.161 10 C -0.158 4.158 11 C -0.193 4.193 12 S 2.685 3.315 13 O -0.955 6.955 14 O -0.951 6.951 15 C -0.723 4.723 16 C -0.010 4.010 17 C -0.559 4.559 18 H 0.078 0.922 19 C -0.144 4.144 20 N -0.528 5.528 21 Si 0.726 3.274 22 H -0.201 1.201 23 H -0.211 1.211 24 H -0.201 1.201 25 H 0.042 0.958 26 H 0.085 0.915 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.087 0.913 30 H 0.043 0.957 31 H 0.068 0.932 32 H 0.097 0.903 33 H 0.121 0.879 34 H 0.099 0.901 35 H 0.125 0.875 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.087 0.913 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.080 0.920 42 H 0.091 0.909 43 H 0.100 0.900 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -20.928 5.388 0.957 21.632 hybrid contribution 0.622 1.830 1.314 2.337 sum -20.307 7.218 2.270 21.670 Atomic orbital electron populations 1.22451 0.87600 1.02338 1.00305 1.61867 1.07774 1.13988 1.43135 1.22401 1.01354 0.88388 1.00274 1.22991 1.01212 0.94687 0.91794 1.21312 0.99164 0.89209 0.91299 1.57819 1.37194 1.67879 1.20223 1.21582 0.94373 0.97071 0.83465 1.22742 0.94260 1.00555 0.99635 1.22473 0.98795 0.95789 0.99031 1.22297 0.95120 0.97091 1.01297 1.22913 0.97128 0.97971 1.01247 1.05804 0.74276 0.76764 0.74609 1.93524 1.85820 1.49059 1.67102 1.93535 1.85670 1.85410 1.30445 1.30550 1.14819 1.16036 1.10908 1.18947 0.85757 0.97586 0.98675 1.20946 0.90426 1.00550 1.43977 0.92173 1.25054 0.98615 0.95672 0.95047 1.69938 1.15567 1.22083 1.45242 0.86547 0.80173 0.81510 0.79132 1.20121 1.21053 1.20088 0.95767 0.91458 0.91147 0.90879 0.91326 0.95747 0.93163 0.90261 0.87875 0.90065 0.87512 0.90555 0.90977 0.91256 0.91619 0.91772 0.92017 0.90942 0.89956 0.86372 0.86336 0.94942 0.94881 0.92471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.32 60.07 0.56 0.74 16 2 N -0.54 -5.92 5.02 -251.26 -1.26 -7.18 16 3 C 0.02 0.23 9.57 60.07 0.57 0.81 16 4 C 0.02 0.26 4.45 -3.83 -0.02 0.24 16 5 C 0.12 1.42 5.13 -4.04 -0.02 1.40 16 6 N -1.00 -13.71 2.67 -106.12 -0.28 -13.99 16 7 C 0.14 1.68 3.30 -66.82 -0.22 1.46 16 8 C -0.13 -1.31 6.39 -25.03 -0.16 -1.47 16 9 C -0.12 -0.98 6.91 -24.70 -0.17 -1.15 16 10 C -0.12 -0.98 6.83 -25.07 -0.17 -1.15 16 11 C -0.15 -1.54 6.08 -25.61 -0.16 -1.70 16 12 S 2.59 47.88 5.42 -107.50 -0.58 47.30 16 13 O -0.96 -20.24 16.53 -57.54 -0.95 -21.19 16 14 O -0.96 -20.39 16.54 -57.54 -0.95 -21.34 16 15 C -0.59 -11.47 6.11 37.16 0.23 -11.24 16 16 C 0.03 0.76 4.98 -27.89 -0.14 0.62 16 17 C -0.52 -14.38 9.11 -34.44 -0.31 -14.69 16 18 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 19 C 0.06 1.66 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -26.58 13.29 55.43 0.74 -25.84 16 21 Si 0.90 21.23 29.54 -169.99 -5.02 16.21 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 23 H -0.29 -6.67 7.11 56.52 0.40 -6.26 16 24 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 25 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 26 H 0.07 0.51 8.12 -51.93 -0.42 0.09 16 27 H 0.07 0.57 6.60 -51.93 -0.34 0.22 16 28 H 0.07 0.76 8.12 -51.93 -0.42 0.33 16 29 H 0.07 0.58 8.12 -51.93 -0.42 0.15 16 30 H 0.02 0.22 8.14 -51.93 -0.42 -0.21 16 31 H 0.05 0.52 5.58 -51.93 -0.29 0.23 16 32 H 0.08 1.00 6.65 -51.93 -0.35 0.66 16 33 H 0.10 1.45 6.84 -51.93 -0.36 1.10 16 34 H 0.08 0.82 4.50 -51.93 -0.23 0.58 16 35 H 0.11 1.40 6.81 -51.92 -0.35 1.05 16 36 H 0.08 0.72 5.65 -51.93 -0.29 0.43 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 39 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 40 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 41 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 43 H 0.08 0.84 4.67 -51.93 -0.24 0.60 16 44 H 0.12 2.09 6.73 -51.92 -0.35 1.74 16 45 H 0.12 2.07 8.14 -51.93 -0.42 1.64 16 46 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.03 0.90 8.14 -51.93 -0.42 0.48 16 48 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 377.95 15.07 5.70 5.70 Total: -1.00 -33.67 377.95 -10.98 -44.66 By element: Atomic # 1 Polarization: 8.53 SS G_CDS: -8.26 Total: 0.27 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -0.10 Total: -24.58 kcal Atomic # 7 Polarization: -46.21 SS G_CDS: -0.81 Total: -47.02 kcal Atomic # 8 Polarization: -40.63 SS G_CDS: -1.90 Total: -42.53 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Atomic # 16 Polarization: 47.88 SS G_CDS: -0.58 Total: 47.30 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.67 -10.98 -44.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163782994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.750 kcal (2) G-P(sol) polarization free energy of solvation -33.672 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.984 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds