Wall clock time and date at job start Tue Mar 31 2020 12:26:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 111.00244 * 2 1 4 4 C 1.46901 * 111.00083 * 123.95625 * 2 1 3 5 5 C 1.52996 * 109.47140 * 66.04499 * 4 2 1 6 6 N 1.46502 * 109.47205 * 174.25785 * 5 4 2 7 7 C 1.46501 * 119.99793 * 86.36300 * 6 5 4 8 8 C 1.54257 * 110.03267 * 50.64146 * 7 6 5 9 9 C 1.54971 * 104.15709 * 217.13446 * 8 7 6 10 10 C 1.54885 * 102.78054 * 37.88654 * 9 8 7 11 11 C 1.53872 * 110.03408 * 293.41743 * 7 6 5 12 12 S 1.65597 * 119.99921 * 266.36883 * 6 5 4 13 13 O 1.42105 * 104.27720 * 206.06954 * 12 6 5 14 14 O 1.42100 * 104.27503 * 333.92282 * 12 6 5 15 15 C 1.81398 * 104.45436 * 89.99778 * 12 6 5 16 16 C 1.52999 * 109.47429 * 180.02562 * 15 12 6 17 17 C 1.50696 * 109.47290 * 179.97438 * 16 15 12 18 18 H 1.08004 * 119.99694 * 359.97438 * 17 16 15 19 19 C 1.37877 * 119.99795 * 180.02562 * 17 16 15 20 20 N 1.31507 * 120.00546 * 359.97438 * 19 17 16 21 21 Si 1.86803 * 119.99741 * 179.97438 * 19 17 16 22 22 H 1.48500 * 109.47125 * 59.99461 * 21 19 17 23 23 H 1.48495 * 109.47211 * 179.97438 * 21 19 17 24 24 H 1.48508 * 109.46976 * 299.99917 * 21 19 17 25 25 H 1.09002 * 109.46799 * 296.04644 * 1 2 3 26 26 H 1.08994 * 109.46821 * 56.04266 * 1 2 3 27 27 H 1.08994 * 109.47179 * 176.04265 * 1 2 3 28 28 H 1.08997 * 109.47391 * 183.95098 * 3 2 1 29 29 H 1.08999 * 109.47279 * 303.95492 * 3 2 1 30 30 H 1.09005 * 109.46877 * 63.95351 * 3 2 1 31 31 H 1.09006 * 109.46930 * 306.04213 * 4 2 1 32 32 H 1.09001 * 109.46894 * 186.05014 * 4 2 1 33 33 H 1.08998 * 109.46993 * 54.25942 * 5 4 2 34 34 H 1.09002 * 109.47208 * 294.25538 * 5 4 2 35 35 H 1.09008 * 110.01165 * 172.03463 * 7 6 5 36 36 H 1.09000 * 110.48890 * 335.77659 * 8 7 6 37 37 H 1.08998 * 110.48783 * 98.42597 * 8 7 6 38 38 H 1.09000 * 110.71658 * 279.57248 * 9 8 7 39 39 H 1.09005 * 110.92102 * 156.29557 * 9 8 7 40 40 H 1.08992 * 110.48781 * 203.40664 * 10 9 8 41 41 H 1.09005 * 110.59744 * 80.81382 * 10 9 8 42 42 H 1.09001 * 110.03630 * 238.57330 * 11 7 6 43 43 H 1.09004 * 110.03400 * 0.02562 * 11 7 6 44 44 H 1.09007 * 109.46753 * 300.00151 * 15 12 6 45 45 H 1.08996 * 109.47223 * 59.99868 * 15 12 6 46 46 H 1.08999 * 109.46673 * 300.00198 * 16 15 12 47 47 H 1.09004 * 109.46885 * 59.99458 * 16 15 12 48 48 H 0.96995 * 120.00304 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9955 -0.7660 1.1376 5 6 1.6315 -2.2426 0.9703 6 7 2.2712 -3.0264 2.0299 7 6 1.6077 -3.1841 3.3265 8 6 0.1529 -3.6542 3.1219 9 6 -0.6444 -2.9099 4.2228 10 6 0.0381 -1.5200 4.2596 11 6 1.5351 -1.8279 4.0499 12 16 3.7443 -3.7338 1.7620 13 8 3.7680 -4.8416 2.6518 14 8 3.7911 -3.9237 0.3545 15 6 4.9493 -2.4790 2.2756 16 6 6.3663 -3.0195 2.0731 17 6 7.3674 -1.9768 2.4992 18 1 7.0270 -1.0237 2.8762 19 6 8.7178 -2.2392 2.4066 20 7 9.1322 -3.3996 1.9471 21 14 9.9587 -0.9464 2.9341 22 1 9.7540 -0.6198 4.3682 23 1 11.3339 -1.4711 2.7377 24 1 9.7745 0.2793 2.1161 25 1 -0.3633 0.4513 0.9233 26 1 -0.3633 0.5740 -0.8524 27 1 -0.3633 -1.0251 -0.0709 28 1 3.0828 1.3432 -0.0708 29 1 1.5899 1.9164 -0.8524 30 1 1.7045 1.8723 0.9233 31 1 1.5612 -0.3872 2.0628 32 1 3.0798 -0.6611 1.1756 33 1 1.9780 -2.5944 -0.0014 34 1 0.5497 -2.3597 1.0345 35 1 2.1506 -3.9048 3.9381 36 1 -0.2050 -3.3682 2.1328 37 1 0.0777 -4.7329 3.2587 38 1 -0.5414 -3.4163 5.1826 39 1 -1.6949 -2.8172 3.9474 40 1 -0.1213 -1.0422 5.2262 41 1 -0.3375 -0.8870 3.4555 42 1 2.0419 -1.8907 5.0129 43 1 1.9931 -1.0523 3.4360 44 1 4.8149 -1.5791 1.6753 45 1 4.7984 -2.2396 3.3281 46 1 6.5009 -3.9196 2.6730 47 1 6.5169 -3.2587 1.0204 48 1 10.0822 -3.5843 1.8823 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000163782994.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:19 Heat of formation + Delta-G solvation = -98.324228 kcal Electronic energy + Delta-G solvation = -26819.282983 eV Core-core repulsion = 23228.117645 eV Total energy + Delta-G solvation = -3591.165338 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.19878 -38.45791 -37.93835 -37.05415 -35.91972 -35.34513 -33.15876 -30.64627 -29.66685 -28.42222 -27.91555 -27.60591 -25.02337 -23.58311 -22.11572 -21.36441 -21.16130 -19.84438 -19.30579 -18.47295 -17.64584 -17.08516 -16.57854 -16.47054 -16.28837 -16.19359 -16.04953 -15.57482 -15.20746 -14.63146 -14.49362 -14.22540 -14.12737 -13.85740 -13.76471 -13.51510 -13.24845 -13.17698 -13.09555 -12.93370 -12.83786 -12.62212 -12.55168 -12.43662 -12.26020 -12.23118 -12.14370 -11.97963 -11.88890 -11.79806 -11.66783 -11.43914 -11.21776 -11.13262 -10.64931 -9.98213 -9.21682 -8.26473 -6.41004 -0.74571 1.39756 1.43454 1.51665 1.65601 2.37317 2.79857 3.01012 3.06680 3.18664 3.53812 3.73003 3.88284 3.90706 4.01525 4.03675 4.12928 4.30740 4.33568 4.43839 4.52376 4.55372 4.61879 4.63275 4.67176 4.71886 4.73509 4.78070 4.85583 4.94489 4.96608 5.06066 5.09450 5.13403 5.15870 5.23849 5.25357 5.27219 5.39708 5.44529 5.53130 5.66651 5.73326 6.04643 6.07279 6.15464 6.71810 7.29167 8.85777 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012831 B = 0.004297 C = 0.003831 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2181.752628 B = 6515.311420 C = 7307.639417 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.563 5.563 3 C 0.024 3.976 4 C 0.025 3.975 5 C 0.115 3.885 6 N -0.983 5.983 7 C 0.130 3.870 8 C -0.133 4.133 9 C -0.116 4.116 10 C -0.114 4.114 11 C -0.154 4.154 12 S 2.605 3.395 13 O -0.993 6.993 14 O -0.992 6.992 15 C -0.586 4.586 16 C 0.024 3.976 17 C -0.539 4.539 18 H 0.075 0.925 19 C -0.002 4.002 20 N -0.934 5.934 21 Si 0.974 3.026 22 H -0.263 1.263 23 H -0.283 1.283 24 H -0.263 1.263 25 H 0.036 0.964 26 H 0.076 0.924 27 H 0.074 0.926 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.082 0.918 34 H 0.110 0.890 35 H 0.090 0.910 36 H 0.083 0.917 37 H 0.066 0.934 38 H 0.071 0.929 39 H 0.083 0.917 40 H 0.076 0.924 41 H 0.070 0.930 42 H 0.074 0.926 43 H 0.082 0.918 44 H 0.136 0.864 45 H 0.140 0.860 46 H 0.005 0.995 47 H 0.003 0.997 48 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.487 9.130 2.890 25.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.288 5.288 3 C -0.124 4.124 4 C -0.104 4.104 5 C -0.010 4.010 6 N -0.820 5.820 7 C 0.025 3.975 8 C -0.172 4.172 9 C -0.154 4.154 10 C -0.152 4.152 11 C -0.193 4.193 12 S 2.704 3.296 13 O -0.983 6.983 14 O -0.982 6.982 15 C -0.718 4.718 16 C -0.015 4.015 17 C -0.577 4.577 18 H 0.093 0.907 19 C -0.201 4.201 20 N -0.574 5.574 21 Si 0.797 3.203 22 H -0.187 1.187 23 H -0.209 1.209 24 H -0.188 1.188 25 H 0.054 0.946 26 H 0.094 0.906 27 H 0.092 0.908 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.128 0.872 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.085 0.915 38 H 0.090 0.910 39 H 0.102 0.898 40 H 0.094 0.906 41 H 0.089 0.911 42 H 0.093 0.907 43 H 0.100 0.900 44 H 0.155 0.845 45 H 0.158 0.842 46 H 0.023 0.977 47 H 0.022 0.978 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -23.069 7.891 2.049 24.468 hybrid contribution 1.190 1.022 0.953 1.835 sum -21.880 8.913 3.002 23.815 Atomic orbital electron populations 1.22514 0.85964 1.02939 1.01336 1.61846 1.09409 1.14561 1.42945 1.22412 1.00608 0.88065 1.01339 1.22902 1.00385 0.94104 0.93002 1.21452 1.00431 0.89488 0.89617 1.57414 1.35015 1.67856 1.21675 1.21875 0.95206 0.98266 0.82176 1.22771 0.92883 1.00618 1.00924 1.22462 0.99385 0.95264 0.98304 1.22285 0.93254 0.97313 1.02344 1.22917 0.98991 0.96460 1.00942 1.04915 0.75043 0.76299 0.73384 1.93481 1.86627 1.50592 1.67615 1.93488 1.86537 1.85911 1.32241 1.30442 1.11559 1.17011 1.12822 1.18790 0.89712 0.96782 0.96237 1.21445 0.91232 1.01371 1.43691 0.90678 1.26114 1.01105 0.97967 0.94904 1.70094 1.16116 1.24490 1.46680 0.85370 0.76987 0.78597 0.79340 1.18710 1.20885 1.18757 0.94594 0.90553 0.90766 0.92237 0.90084 0.94788 0.91434 0.91997 0.89976 0.87206 0.89229 0.89844 0.91474 0.91020 0.89826 0.90576 0.91092 0.90750 0.90013 0.84543 0.84196 0.97688 0.97818 0.92353 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.28 9.32 127.69 1.19 1.48 16 2 N -0.56 -11.20 5.02 -948.84 -4.76 -15.96 16 3 C 0.02 0.42 9.57 127.69 1.22 1.64 16 4 C 0.03 0.54 4.45 86.30 0.38 0.92 16 5 C 0.12 2.67 5.13 86.38 0.44 3.11 16 6 N -0.98 -26.46 2.67 -489.65 -1.31 -27.77 16 7 C 0.13 2.94 3.30 45.71 0.15 3.09 16 8 C -0.13 -2.34 6.39 31.69 0.20 -2.14 16 9 C -0.12 -1.47 6.91 31.91 0.22 -1.25 16 10 C -0.11 -1.45 6.83 31.67 0.22 -1.23 16 11 C -0.15 -2.73 6.08 31.32 0.19 -2.54 16 12 S 2.60 99.33 5.42 -56.49 -0.31 99.02 16 13 O -0.99 -43.18 16.53 -127.65 -2.11 -45.29 16 14 O -0.99 -43.77 16.54 -127.65 -2.11 -45.88 16 15 C -0.59 -23.22 6.11 71.98 0.44 -22.78 16 16 C 0.02 1.27 4.98 29.85 0.15 1.42 16 17 C -0.54 -30.24 9.11 25.60 0.23 -30.00 16 18 H 0.08 3.88 7.74 -2.91 -0.02 3.85 16 19 C 0.00 -0.14 5.46 84.66 0.46 0.33 16 20 N -0.93 -57.53 13.29 21.45 0.28 -57.24 16 21 Si 0.97 43.51 29.54 68.60 2.03 45.54 16 22 H -0.26 -11.10 7.11 99.48 0.71 -10.39 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.78 16 24 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 25 H 0.04 0.43 8.14 -2.39 -0.02 0.41 16 26 H 0.08 0.94 8.12 -2.39 -0.02 0.92 16 27 H 0.07 0.97 6.60 -2.39 -0.02 0.95 16 28 H 0.06 1.19 8.12 -2.39 -0.02 1.17 16 29 H 0.08 1.20 8.12 -2.39 -0.02 1.18 16 30 H 0.03 0.52 8.14 -2.38 -0.02 0.50 16 31 H 0.07 1.19 5.58 -2.38 -0.01 1.18 16 32 H 0.06 1.52 6.65 -2.39 -0.02 1.50 16 33 H 0.08 2.30 6.84 -2.39 -0.02 2.28 16 34 H 0.11 1.93 4.50 -2.39 -0.01 1.92 16 35 H 0.09 2.35 6.81 -2.38 -0.02 2.33 16 36 H 0.08 1.34 5.65 -2.39 -0.01 1.32 16 37 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 38 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.07 0.80 8.14 -2.38 -0.02 0.78 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.47 4.67 -2.39 -0.01 1.45 16 44 H 0.14 4.84 6.73 -2.39 -0.02 4.83 16 45 H 0.14 4.85 8.14 -2.39 -0.02 4.83 16 46 H 0.00 0.28 8.14 -2.39 -0.02 0.26 16 47 H 0.00 0.20 8.14 -2.39 -0.02 0.19 16 48 H 0.27 15.42 8.31 -92.71 -0.77 14.65 16 Total: -1.00 -74.81 377.95 -1.86 -76.66 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: 0.93 Total: 18.89 kcal Atomic # 6 Polarization: -53.47 SS G_CDS: 5.50 Total: -47.96 kcal Atomic # 7 Polarization: -95.19 SS G_CDS: -5.78 Total: -100.98 kcal Atomic # 8 Polarization: -86.95 SS G_CDS: -4.22 Total: -91.17 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Atomic # 16 Polarization: 99.33 SS G_CDS: -0.31 Total: 99.02 kcal Total: -74.81 -1.86 -76.66 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000163782994.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.663 kcal (2) G-P(sol) polarization free energy of solvation -74.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.662 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds