Wall clock time and date at job start Tue Mar 31 2020 12:00:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47114 * 2 1 4 4 C 1.46900 * 111.00273 * 160.28962 * 3 2 1 5 5 C 1.53012 * 109.46689 * 287.96024 * 4 3 2 6 6 C 1.46902 * 110.99784 * 284.23918 * 3 2 1 7 7 C 1.53005 * 109.47191 * 169.99920 * 6 3 2 8 8 H 1.09007 * 110.63672 * 51.85635 * 7 6 3 9 9 C 1.55156 * 110.87253 * 288.61432 * 7 6 3 10 10 C 1.55131 * 101.48376 * 205.89838 * 9 7 6 11 11 N 1.47427 * 104.72276 * 37.29187 * 10 9 7 12 12 S 1.65596 * 125.64844 * 155.82131 * 11 10 9 13 13 O 1.42100 * 104.28247 * 153.61903 * 12 11 10 14 14 O 1.42102 * 104.28011 * 25.76087 * 12 11 10 15 15 C 1.81401 * 104.44811 * 269.69071 * 12 11 10 16 16 C 1.53003 * 109.47463 * 179.97438 * 15 12 11 17 17 C 1.50695 * 109.47246 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00188 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99897 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47191 * 89.99845 * 21 19 17 23 23 H 1.48503 * 109.46934 * 210.00412 * 21 19 17 24 24 H 1.48500 * 109.47117 * 329.99995 * 21 19 17 25 25 C 1.47023 * 108.70472 * 335.55246 * 11 10 9 26 26 H 1.08994 * 109.46936 * 185.51019 * 1 2 3 27 27 H 1.09003 * 109.47271 * 305.51591 * 1 2 3 28 28 H 1.09002 * 109.47100 * 65.51122 * 1 2 3 29 29 H 1.08992 * 109.47416 * 239.99758 * 2 1 3 30 30 H 1.09005 * 109.47285 * 119.99292 * 2 1 3 31 31 H 1.08995 * 109.47542 * 47.95362 * 4 3 2 32 32 H 1.09001 * 109.47679 * 167.96278 * 4 3 2 33 33 H 1.08997 * 109.46795 * 299.24712 * 5 4 3 34 34 H 1.09001 * 109.46651 * 59.25063 * 5 4 3 35 35 H 1.09000 * 109.46606 * 179.24525 * 5 4 3 36 36 H 1.09000 * 109.47280 * 50.00308 * 6 3 2 37 37 H 1.08997 * 109.47303 * 289.99961 * 6 3 2 38 38 H 1.08998 * 110.99884 * 324.13414 * 9 7 6 39 39 H 1.08994 * 111.00420 * 87.94708 * 9 7 6 40 40 H 1.08999 * 110.49296 * 278.45042 * 10 9 7 41 41 H 1.08997 * 110.34257 * 156.05562 * 10 9 7 42 42 H 1.09005 * 109.47177 * 60.00302 * 15 12 11 43 43 H 1.08998 * 109.47282 * 300.00216 * 15 12 11 44 44 H 1.08998 * 109.47333 * 300.00534 * 16 15 12 45 45 H 1.09007 * 109.46732 * 59.99758 * 16 15 12 46 46 H 0.97000 * 120.00234 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.88213 * 120.70307 * 25 11 10 48 48 H 1.08999 * 109.88761 * 241.71915 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4510 0.4625 5 6 3.4625 1.1867 1.9688 6 6 1.8771 1.9937 -1.3293 7 6 2.1588 3.4947 -1.2358 8 1 3.1124 3.6765 -0.7400 9 6 1.0078 4.2283 -0.4980 10 6 1.1240 5.6580 -1.0887 11 7 1.4830 5.4508 -2.5035 12 16 1.2000 6.5185 -3.7373 13 8 2.2056 6.2208 -4.6961 14 8 1.1493 7.7868 -3.0986 15 6 -0.4372 6.0576 -4.3680 16 6 -0.8170 6.9832 -5.5256 17 6 -2.1768 6.5999 -6.0500 18 1 -2.7164 5.7785 -5.6021 19 6 -2.7321 7.2978 -7.1015 20 7 -3.9189 6.9637 -7.5588 21 14 -1.7984 8.7180 -7.8766 22 1 -0.9531 8.2081 -8.9859 23 1 -2.7636 9.7141 -8.4072 24 1 -0.9362 9.3611 -6.8527 25 6 2.1396 4.1422 -2.6366 26 1 -0.3633 -1.0229 0.0987 27 1 -0.3634 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 4.0043 0.6984 -0.0582 32 1 3.8181 2.4409 0.2537 33 1 2.8816 1.9471 2.4906 34 1 3.0446 0.2021 2.1789 35 1 4.4973 1.2224 2.3096 36 1 0.8619 1.8367 -1.6939 37 1 2.5857 1.5333 -2.0177 38 1 0.0431 3.7806 -0.7365 39 1 1.1768 4.2367 0.5788 40 1 1.9057 6.2198 -0.5773 41 1 0.1694 6.1785 -1.0118 42 1 -1.1740 6.1530 -3.5704 43 1 -0.4140 5.0262 -4.7197 44 1 -0.8404 8.0145 -5.1736 45 1 -0.0803 6.8883 -6.3234 46 1 -4.3094 7.4544 -8.2988 47 1 1.5775 3.5140 -3.3276 48 1 3.1585 4.2739 -3.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173918588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:31 Heat of formation + Delta-G solvation = -76.239050 kcal Electronic energy + Delta-G solvation = -25614.083042 eV Core-core repulsion = 22023.875389 eV Total energy + Delta-G solvation = -3590.207653 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.41289 -37.56618 -36.71243 -35.55164 -33.93926 -32.25315 -32.15205 -31.47346 -29.70712 -28.73020 -25.97658 -25.02496 -23.35376 -22.42822 -21.36327 -21.05947 -20.05423 -18.67011 -17.68501 -16.91418 -16.74736 -15.89400 -15.62632 -15.52236 -15.18856 -14.77257 -14.31970 -14.19376 -14.06349 -13.80276 -13.54912 -13.31793 -13.01268 -12.79160 -12.60331 -12.47492 -12.26578 -11.94840 -11.89519 -11.81684 -11.74245 -11.66361 -11.42444 -11.31195 -11.24714 -11.19350 -11.17319 -11.08091 -10.81080 -10.54473 -10.44097 -10.15046 -9.73222 -9.41970 -8.79295 -8.66194 -8.62832 -6.16477 -4.17646 0.63021 2.95380 3.26764 3.34031 3.38525 3.49857 4.20226 4.27629 4.36060 4.44247 4.49474 4.62197 4.71890 4.83888 4.88378 5.05224 5.13032 5.15615 5.17969 5.21833 5.27215 5.28299 5.36205 5.41985 5.47740 5.53010 5.53635 5.56616 5.61252 5.66523 5.69631 5.79665 5.86992 5.89708 5.94691 5.99473 6.11130 6.20349 6.29952 6.45351 6.77863 6.78930 6.82303 6.94568 7.55027 8.36880 8.84673 9.43238 10.95916 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.002961 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.697941 B = 9452.552170 C =10282.484879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.048 3.952 3 N -0.535 5.535 4 C 0.044 3.956 5 C -0.147 4.147 6 C 0.061 3.939 7 C -0.095 4.095 8 H 0.085 0.915 9 C -0.111 4.111 10 C 0.119 3.881 11 N -1.017 6.017 12 S 2.604 3.396 13 O -0.963 6.963 14 O -0.961 6.961 15 C -0.582 4.582 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.078 0.922 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 C 0.126 3.874 26 H 0.056 0.944 27 H 0.064 0.936 28 H 0.055 0.945 29 H 0.033 0.967 30 H 0.073 0.927 31 H 0.032 0.968 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.052 0.948 35 H 0.056 0.944 36 H 0.083 0.917 37 H 0.037 0.963 38 H 0.077 0.923 39 H 0.082 0.918 40 H 0.066 0.934 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.124 0.876 44 H 0.032 0.968 45 H 0.028 0.972 46 H 0.266 0.734 47 H 0.066 0.934 48 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.372 -13.514 18.708 26.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.084 4.084 5 C -0.204 4.204 6 C -0.067 4.067 7 C -0.115 4.115 8 H 0.103 0.897 9 C -0.150 4.150 10 C -0.006 4.006 11 N -0.854 5.854 12 S 2.703 3.297 13 O -0.954 6.954 14 O -0.952 6.952 15 C -0.715 4.715 16 C -0.046 4.046 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.695 3.305 22 H -0.197 1.197 23 H -0.207 1.207 24 H -0.186 1.186 25 C -0.001 4.001 26 H 0.075 0.925 27 H 0.083 0.917 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.092 0.908 31 H 0.050 0.950 32 H 0.096 0.904 33 H 0.082 0.918 34 H 0.071 0.929 35 H 0.075 0.925 36 H 0.101 0.899 37 H 0.055 0.945 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.084 0.916 41 H 0.094 0.906 42 H 0.143 0.857 43 H 0.142 0.858 44 H 0.050 0.950 45 H 0.046 0.954 46 H 0.076 0.924 47 H 0.084 0.916 48 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 13.568 -12.454 18.576 26.158 hybrid contribution 0.263 -0.215 -1.106 1.157 sum 13.831 -12.669 17.470 25.632 Atomic orbital electron populations 1.21773 0.94689 1.01436 1.02646 1.22119 0.96392 0.88727 1.00706 1.62034 1.20207 1.17934 1.25838 1.22169 0.88677 1.01449 0.96091 1.21782 1.01299 1.01997 0.95340 1.22165 1.01911 0.93358 0.89260 1.22271 1.00064 0.93900 0.95250 0.89694 1.22763 0.98583 0.93630 1.00060 1.22047 1.00517 0.97616 0.80463 1.58806 1.74026 1.32193 1.20401 1.05312 0.78199 0.73362 0.72835 1.93536 1.55982 1.84591 1.61259 1.93545 1.88084 1.38964 1.74594 1.30335 1.19575 1.10996 1.10589 1.19413 0.99757 0.94046 0.91430 1.20847 0.99847 1.18179 1.16915 0.90424 1.24988 0.94785 0.97061 0.96286 1.69878 1.15928 1.41046 1.26522 0.86924 0.80311 0.82798 0.80419 1.19668 1.20733 1.18604 1.21643 0.97794 0.83401 0.97214 0.92537 0.91721 0.92641 0.94842 0.90837 0.95014 0.90355 0.91818 0.92855 0.92539 0.89907 0.94469 0.90434 0.89895 0.91568 0.90621 0.85676 0.85766 0.94953 0.95430 0.92379 0.91611 0.91226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.01 9.94 37.16 0.37 -0.64 16 2 C 0.05 0.33 5.55 -3.82 -0.02 0.31 16 3 N -0.54 -3.99 4.31 -234.62 -1.01 -5.01 16 4 C 0.04 0.29 5.55 -3.82 -0.02 0.27 16 5 C -0.15 -0.87 9.99 37.16 0.37 -0.49 16 6 C 0.06 0.49 4.09 -3.82 -0.02 0.47 16 7 C -0.09 -0.82 2.90 -88.78 -0.26 -1.08 16 8 H 0.08 0.69 6.10 -51.93 -0.32 0.37 16 9 C -0.11 -0.98 6.47 -24.46 -0.16 -1.14 16 10 C 0.12 1.33 6.90 -2.41 -0.02 1.31 16 11 N -1.02 -13.70 3.62 -111.29 -0.40 -14.10 16 12 S 2.60 45.98 5.65 -107.50 -0.61 45.37 16 13 O -0.96 -19.38 17.60 -57.54 -1.01 -20.39 16 14 O -0.96 -19.43 17.60 -57.54 -1.01 -20.44 16 15 C -0.58 -10.88 6.12 37.16 0.23 -10.65 16 16 C -0.01 -0.17 4.05 -27.88 -0.11 -0.28 16 17 C -0.52 -14.61 9.66 -34.44 -0.33 -14.94 16 18 H 0.08 2.29 7.99 -52.49 -0.42 1.87 16 19 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.19 13.96 55.43 0.77 -26.41 16 21 Si 0.87 21.64 27.47 -169.99 -4.67 16.97 16 22 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 C 0.13 1.41 6.49 -3.06 -0.02 1.39 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 27 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 28 H 0.05 0.41 6.97 -51.93 -0.36 0.05 16 29 H 0.03 0.24 8.00 -51.93 -0.42 -0.18 16 30 H 0.07 0.46 6.24 -51.93 -0.32 0.14 16 31 H 0.03 0.21 8.05 -51.93 -0.42 -0.20 16 32 H 0.08 0.53 5.87 -51.93 -0.30 0.22 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.05 0.31 6.52 -51.93 -0.34 -0.03 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 36 H 0.08 0.69 6.59 -51.93 -0.34 0.34 16 37 H 0.04 0.29 8.12 -51.93 -0.42 -0.13 16 38 H 0.08 0.69 7.95 -51.93 -0.41 0.28 16 39 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 41 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.12 2.14 8.14 -51.92 -0.42 1.72 16 43 H 0.12 2.12 8.14 -51.93 -0.42 1.70 16 44 H 0.03 0.78 7.20 -51.93 -0.37 0.40 16 45 H 0.03 0.65 7.57 -51.93 -0.39 0.26 16 46 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 47 H 0.07 0.69 7.82 -51.93 -0.41 0.28 16 48 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 384.85 15.07 5.80 5.80 Total: -1.00 -34.05 384.85 -10.87 -44.92 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: -8.64 Total: -3.19 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: -0.09 Total: -23.51 kcal Atomic # 7 Polarization: -44.88 SS G_CDS: -0.64 Total: -45.52 kcal Atomic # 8 Polarization: -38.81 SS G_CDS: -2.03 Total: -40.83 kcal Atomic # 14 Polarization: 21.64 SS G_CDS: -4.67 Total: 16.97 kcal Atomic # 16 Polarization: 45.98 SS G_CDS: -0.61 Total: 45.37 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -34.05 -10.87 -44.92 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173918588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.322 kcal (2) G-P(sol) polarization free energy of solvation -34.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.367 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.917 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.239 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds