Wall clock time and date at job start Tue Mar 31 2020 12:00:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.47114 * 2 1 4 4 C 1.46900 * 111.00273 * 160.28962 * 3 2 1 5 5 C 1.53012 * 109.46689 * 287.96024 * 4 3 2 6 6 C 1.46902 * 110.99784 * 284.23918 * 3 2 1 7 7 C 1.53005 * 109.47191 * 169.99920 * 6 3 2 8 8 H 1.09007 * 110.63672 * 51.85635 * 7 6 3 9 9 C 1.55156 * 110.87253 * 288.61432 * 7 6 3 10 10 C 1.55131 * 101.48376 * 205.89838 * 9 7 6 11 11 N 1.47427 * 104.72276 * 37.29187 * 10 9 7 12 12 S 1.65596 * 125.64844 * 155.82131 * 11 10 9 13 13 O 1.42100 * 104.28247 * 153.61903 * 12 11 10 14 14 O 1.42102 * 104.28011 * 25.76087 * 12 11 10 15 15 C 1.81401 * 104.44811 * 269.69071 * 12 11 10 16 16 C 1.53003 * 109.47463 * 179.97438 * 15 12 11 17 17 C 1.50695 * 109.47246 * 179.97438 * 16 15 12 18 18 H 1.07998 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.37882 * 119.99901 * 180.02562 * 17 16 15 20 20 N 1.31509 * 120.00188 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 119.99897 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47191 * 89.99845 * 21 19 17 23 23 H 1.48503 * 109.46934 * 210.00412 * 21 19 17 24 24 H 1.48500 * 109.47117 * 329.99995 * 21 19 17 25 25 C 1.47023 * 108.70472 * 335.55246 * 11 10 9 26 26 H 1.08994 * 109.46936 * 185.51019 * 1 2 3 27 27 H 1.09003 * 109.47271 * 305.51591 * 1 2 3 28 28 H 1.09002 * 109.47100 * 65.51122 * 1 2 3 29 29 H 1.08992 * 109.47416 * 239.99758 * 2 1 3 30 30 H 1.09005 * 109.47285 * 119.99292 * 2 1 3 31 31 H 1.08995 * 109.47542 * 47.95362 * 4 3 2 32 32 H 1.09001 * 109.47679 * 167.96278 * 4 3 2 33 33 H 1.08997 * 109.46795 * 299.24712 * 5 4 3 34 34 H 1.09001 * 109.46651 * 59.25063 * 5 4 3 35 35 H 1.09000 * 109.46606 * 179.24525 * 5 4 3 36 36 H 1.09000 * 109.47280 * 50.00308 * 6 3 2 37 37 H 1.08997 * 109.47303 * 289.99961 * 6 3 2 38 38 H 1.08998 * 110.99884 * 324.13414 * 9 7 6 39 39 H 1.08994 * 111.00420 * 87.94708 * 9 7 6 40 40 H 1.08999 * 110.49296 * 278.45042 * 10 9 7 41 41 H 1.08997 * 110.34257 * 156.05562 * 10 9 7 42 42 H 1.09005 * 109.47177 * 60.00302 * 15 12 11 43 43 H 1.08998 * 109.47282 * 300.00216 * 15 12 11 44 44 H 1.08998 * 109.47333 * 300.00534 * 16 15 12 45 45 H 1.09007 * 109.46732 * 59.99758 * 16 15 12 46 46 H 0.97000 * 120.00234 * 180.02562 * 20 19 17 47 47 H 1.08999 * 109.88213 * 120.70307 * 25 11 10 48 48 H 1.08999 * 109.88761 * 241.71915 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4124 1.4510 0.4625 5 6 3.4625 1.1867 1.9688 6 6 1.8771 1.9937 -1.3293 7 6 2.1588 3.4947 -1.2358 8 1 3.1124 3.6765 -0.7400 9 6 1.0078 4.2283 -0.4980 10 6 1.1240 5.6580 -1.0887 11 7 1.4830 5.4508 -2.5035 12 16 1.2000 6.5185 -3.7373 13 8 2.2056 6.2208 -4.6961 14 8 1.1493 7.7868 -3.0986 15 6 -0.4372 6.0576 -4.3680 16 6 -0.8170 6.9832 -5.5256 17 6 -2.1768 6.5999 -6.0500 18 1 -2.7164 5.7785 -5.6021 19 6 -2.7321 7.2978 -7.1015 20 7 -3.9189 6.9637 -7.5588 21 14 -1.7984 8.7180 -7.8766 22 1 -0.9531 8.2081 -8.9859 23 1 -2.7636 9.7141 -8.4072 24 1 -0.9362 9.3611 -6.8527 25 6 2.1396 4.1422 -2.6366 26 1 -0.3633 -1.0229 0.0987 27 1 -0.3634 0.5970 0.8365 28 1 -0.3633 0.4260 -0.9352 29 1 1.8934 -0.5138 -0.8899 30 1 1.8934 -0.5137 0.8901 31 1 4.0043 0.6984 -0.0582 32 1 3.8181 2.4409 0.2537 33 1 2.8816 1.9471 2.4906 34 1 3.0446 0.2021 2.1789 35 1 4.4973 1.2224 2.3096 36 1 0.8619 1.8367 -1.6939 37 1 2.5857 1.5333 -2.0177 38 1 0.0431 3.7806 -0.7365 39 1 1.1768 4.2367 0.5788 40 1 1.9057 6.2198 -0.5773 41 1 0.1694 6.1785 -1.0118 42 1 -1.1740 6.1530 -3.5704 43 1 -0.4140 5.0262 -4.7197 44 1 -0.8404 8.0145 -5.1736 45 1 -0.0803 6.8883 -6.3234 46 1 -4.3094 7.4544 -8.2988 47 1 1.5775 3.5140 -3.3276 48 1 3.1585 4.2739 -3.0006 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173918588.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:30 Heat of formation + Delta-G solvation = -100.341882 kcal Electronic energy + Delta-G solvation = -25615.128220 eV Core-core repulsion = 22023.875389 eV Total energy + Delta-G solvation = -3591.252830 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.14657 -38.28697 -38.22533 -37.07319 -35.91211 -33.48981 -33.04910 -32.65674 -30.52044 -29.40735 -27.90394 -25.75371 -23.86354 -23.54956 -22.80670 -21.97461 -20.71083 -19.99006 -19.37272 -18.48809 -17.66570 -17.09167 -16.81988 -16.45120 -16.35757 -15.89488 -15.53709 -15.34332 -14.88866 -14.78517 -14.74449 -14.54913 -14.25455 -13.85637 -13.81568 -13.28388 -13.25983 -13.17959 -13.08961 -13.04535 -12.97776 -12.85946 -12.57977 -12.42356 -12.30921 -12.25241 -11.98846 -11.95841 -11.91986 -11.76534 -11.72732 -11.41206 -11.32008 -11.17248 -10.85787 -9.91157 -9.19268 -8.37917 -6.43845 -0.79158 1.31107 1.32834 1.43214 1.68982 2.28472 2.78040 2.88423 2.95856 3.10523 3.60745 3.78371 3.83298 3.90935 4.06200 4.09349 4.29689 4.35246 4.39167 4.45871 4.49075 4.53988 4.57101 4.64979 4.68241 4.72671 4.74486 4.83603 4.94532 4.99719 5.02567 5.03528 5.07907 5.13023 5.16644 5.18053 5.20261 5.23476 5.42181 5.43665 5.45712 5.47521 5.52926 6.15328 6.20996 6.24563 6.61933 7.20548 8.77650 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020319 B = 0.002961 C = 0.002722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1377.697941 B = 9452.552170 C =10282.484879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.049 3.951 3 N -0.539 5.539 4 C 0.042 3.958 5 C -0.142 4.142 6 C 0.064 3.936 7 C -0.084 4.084 8 H 0.095 0.905 9 C -0.101 4.101 10 C 0.108 3.892 11 N -1.013 6.013 12 S 2.633 3.367 13 O -0.988 6.988 14 O -0.987 6.987 15 C -0.587 4.587 16 C -0.017 4.017 17 C -0.528 4.528 18 H 0.049 0.951 19 C 0.014 3.986 20 N -0.939 5.939 21 Si 0.925 3.075 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.115 3.885 26 H 0.064 0.936 27 H 0.059 0.941 28 H 0.046 0.954 29 H 0.032 0.968 30 H 0.081 0.919 31 H 0.032 0.968 32 H 0.079 0.921 33 H 0.058 0.942 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.079 0.921 37 H 0.039 0.961 38 H 0.077 0.923 39 H 0.099 0.901 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.138 0.862 43 H 0.137 0.863 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.270 0.730 47 H 0.072 0.928 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.958 -13.861 20.021 28.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.079 4.079 3 N -0.264 5.264 4 C -0.085 4.085 5 C -0.200 4.200 6 C -0.064 4.064 7 C -0.104 4.104 8 H 0.113 0.887 9 C -0.140 4.140 10 C -0.017 4.017 11 N -0.852 5.852 12 S 2.731 3.269 13 O -0.978 6.978 14 O -0.977 6.977 15 C -0.718 4.718 16 C -0.056 4.056 17 C -0.567 4.567 18 H 0.067 0.933 19 C -0.185 4.185 20 N -0.579 5.579 21 Si 0.748 3.252 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.011 4.011 26 H 0.083 0.917 27 H 0.078 0.922 28 H 0.066 0.934 29 H 0.050 0.950 30 H 0.099 0.901 31 H 0.050 0.950 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.072 0.928 35 H 0.083 0.917 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.096 0.904 39 H 0.117 0.883 40 H 0.092 0.908 41 H 0.096 0.904 42 H 0.156 0.844 43 H 0.155 0.845 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.091 0.909 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 15.148 -12.805 19.889 28.089 hybrid contribution -0.239 -0.223 -1.416 1.453 sum 14.908 -13.029 18.472 27.078 Atomic orbital electron populations 1.21745 0.94760 1.01803 1.01939 1.22134 0.96287 0.88486 1.00989 1.62044 1.20761 1.18255 1.25346 1.22213 0.88195 1.01534 0.96565 1.21745 1.01784 1.01811 0.94667 1.22097 1.01766 0.92841 0.89721 1.22210 1.00557 0.94089 0.93564 0.88694 1.22724 0.98635 0.91887 1.00784 1.22347 1.00939 0.99378 0.79017 1.58451 1.73745 1.32637 1.20399 1.04157 0.76974 0.73046 0.72722 1.93499 1.56435 1.85042 1.62848 1.93507 1.88127 1.40953 1.75114 1.30329 1.21515 1.10623 1.09341 1.19372 0.97561 0.95225 0.93411 1.21160 1.01560 1.17207 1.16752 0.93284 1.25876 0.95659 0.99913 0.97038 1.70003 1.17659 1.42729 1.27507 0.86021 0.79454 0.79746 0.80006 1.18477 1.19772 1.17358 1.21917 0.97588 0.82422 0.99149 0.91724 0.92212 0.93445 0.95004 0.90090 0.95014 0.90232 0.92327 0.92795 0.91692 0.90269 0.94322 0.90443 0.88294 0.90805 0.90438 0.84398 0.84451 0.94971 0.95121 0.92069 0.90944 0.91335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.94 71.98 0.72 -1.07 16 2 C 0.05 0.58 5.55 86.30 0.48 1.06 16 3 N -0.54 -6.94 4.31 -896.20 -3.86 -10.80 16 4 C 0.04 0.48 5.55 86.31 0.48 0.96 16 5 C -0.14 -1.38 9.99 71.99 0.72 -0.66 16 6 C 0.06 0.89 4.09 86.30 0.35 1.25 16 7 C -0.08 -1.26 2.90 -9.60 -0.03 -1.29 16 8 H 0.09 1.28 6.10 -2.38 -0.01 1.27 16 9 C -0.10 -1.54 6.47 32.06 0.21 -1.33 16 10 C 0.11 2.18 6.90 86.93 0.60 2.78 16 11 N -1.01 -25.61 3.62 -506.01 -1.83 -27.44 16 12 S 2.63 90.05 5.65 -56.49 -0.32 89.73 16 13 O -0.99 -38.72 17.60 -127.65 -2.25 -40.97 16 14 O -0.99 -38.80 17.60 -127.65 -2.25 -41.05 16 15 C -0.59 -21.54 6.12 71.98 0.44 -21.10 16 16 C -0.02 -0.79 4.05 29.85 0.12 -0.67 16 17 C -0.53 -30.14 9.66 25.60 0.25 -29.89 16 18 H 0.05 2.99 7.99 -2.91 -0.02 2.96 16 19 C 0.01 0.80 5.47 84.66 0.46 1.27 16 20 N -0.94 -58.02 13.96 21.45 0.30 -57.73 16 21 Si 0.93 44.17 27.47 68.60 1.88 46.05 16 22 H -0.26 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.27 -12.53 7.11 99.48 0.71 -11.82 16 24 H -0.25 -11.36 6.54 99.48 0.65 -10.71 16 25 C 0.11 2.36 6.49 86.73 0.56 2.92 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.05 0.65 6.97 -2.39 -0.02 0.64 16 29 H 0.03 0.40 8.00 -2.39 -0.02 0.38 16 30 H 0.08 0.86 6.24 -2.38 -0.01 0.84 16 31 H 0.03 0.36 8.05 -2.39 -0.02 0.34 16 32 H 0.08 0.87 5.87 -2.39 -0.01 0.86 16 33 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.05 0.51 6.52 -2.39 -0.02 0.50 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.08 1.18 6.59 -2.39 -0.02 1.16 16 37 H 0.04 0.54 8.12 -2.39 -0.02 0.52 16 38 H 0.08 1.21 7.95 -2.39 -0.02 1.19 16 39 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 41 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.14 4.63 8.14 -2.39 -0.02 4.61 16 43 H 0.14 4.60 8.14 -2.39 -0.02 4.58 16 44 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 45 H 0.03 1.43 7.57 -2.38 -0.02 1.41 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.07 1.39 7.82 -2.39 -0.02 1.37 16 48 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -72.58 384.85 -2.11 -74.69 By element: Atomic # 1 Polarization: 12.44 SS G_CDS: 0.85 Total: 13.29 kcal Atomic # 6 Polarization: -51.14 SS G_CDS: 5.36 Total: -45.78 kcal Atomic # 7 Polarization: -90.57 SS G_CDS: -5.40 Total: -95.97 kcal Atomic # 8 Polarization: -77.52 SS G_CDS: -4.49 Total: -82.01 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 1.88 Total: 46.05 kcal Atomic # 16 Polarization: 90.05 SS G_CDS: -0.32 Total: 89.73 kcal Total: -72.58 -2.11 -74.69 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173918588.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.651 kcal (2) G-P(sol) polarization free energy of solvation -72.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.229 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.691 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds