Wall clock time and date at job start Tue Mar 31 2020 12:00:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 N 1.46891 * 109.46706 * 2 1 4 4 C 1.46904 * 111.00232 * 296.83003 * 3 2 1 5 5 C 1.52998 * 109.46892 * 288.22416 * 4 3 2 6 6 C 1.46899 * 111.00522 * 60.78912 * 3 2 1 7 7 C 1.52997 * 109.47269 * 66.03920 * 6 3 2 8 8 H 1.08995 * 110.88661 * 305.70586 * 7 6 3 9 9 C 1.55164 * 111.00158 * 69.58785 * 7 6 3 10 10 C 1.54321 * 102.94081 * 153.61305 * 9 7 6 11 11 N 1.47021 * 107.27425 * 337.80460 * 10 9 7 12 12 S 1.65601 * 125.65274 * 178.89338 * 11 10 9 13 13 O 1.42100 * 104.28122 * 206.09599 * 12 11 10 14 14 O 1.42106 * 104.27561 * 333.95514 * 12 11 10 15 15 C 1.81400 * 104.44639 * 90.02434 * 12 11 10 16 16 C 1.53002 * 109.46918 * 180.02562 * 15 12 11 17 17 C 1.50700 * 109.47019 * 180.02562 * 16 15 12 18 18 H 1.08003 * 120.00151 * 359.97438 * 17 16 15 19 19 C 1.37876 * 119.99752 * 179.97438 * 17 16 15 20 20 N 1.31523 * 119.99581 * 179.97438 * 19 17 16 21 21 Si 1.86799 * 120.00486 * 0.02562 * 19 17 16 22 22 H 1.48500 * 109.47307 * 89.99322 * 21 19 17 23 23 H 1.48499 * 109.47321 * 210.00200 * 21 19 17 24 24 H 1.48503 * 109.46704 * 329.99464 * 21 19 17 25 25 C 1.47431 * 108.70198 * 358.94289 * 11 10 9 26 26 H 1.08998 * 109.47041 * 301.16509 * 1 2 3 27 27 H 1.08994 * 109.46832 * 61.16828 * 1 2 3 28 28 H 1.09006 * 109.46831 * 181.16897 * 1 2 3 29 29 H 1.08995 * 109.47129 * 239.99682 * 2 1 3 30 30 H 1.09000 * 109.46843 * 119.99768 * 2 1 3 31 31 H 1.08992 * 109.47009 * 48.22303 * 4 3 2 32 32 H 1.08996 * 109.47240 * 168.22799 * 4 3 2 33 33 H 1.09006 * 109.47278 * 59.82015 * 5 4 3 34 34 H 1.09003 * 109.47053 * 179.81429 * 5 4 3 35 35 H 1.08993 * 109.47560 * 299.82176 * 5 4 3 36 36 H 1.09002 * 109.46669 * 306.03858 * 6 3 2 37 37 H 1.09002 * 109.47023 * 186.04374 * 6 3 2 38 38 H 1.09000 * 110.71525 * 271.97520 * 9 7 6 39 39 H 1.08998 * 110.72241 * 35.06940 * 9 7 6 40 40 H 1.09004 * 109.88469 * 97.22077 * 10 9 7 41 41 H 1.08997 * 109.88378 * 218.23242 * 10 9 7 42 42 H 1.08995 * 109.47179 * 299.99917 * 15 12 11 43 43 H 1.08994 * 109.47207 * 60.00451 * 15 12 11 44 44 H 1.09000 * 109.47226 * 299.99802 * 16 15 12 45 45 H 1.08994 * 109.47153 * 60.00001 * 16 15 12 46 46 H 0.97003 * 119.99547 * 180.02562 * 20 19 17 47 47 H 1.08996 * 110.36264 * 265.28982 * 25 11 10 48 48 H 1.08998 * 110.36476 * 142.96958 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6115 2.0876 -1.2238 5 6 2.4134 1.5513 -2.4113 6 6 1.5641 2.1044 1.1970 7 6 2.2118 1.4894 2.4391 8 1 2.0247 0.4165 2.4841 9 6 3.7334 1.7908 2.4799 10 6 4.0556 1.7393 3.9883 11 7 2.7974 1.9743 4.7117 12 16 2.6189 1.9891 6.3580 13 8 1.2591 1.6328 6.5663 14 8 3.6736 1.1632 6.8323 15 6 2.9033 3.7178 6.8285 16 6 2.7650 3.8628 8.3453 17 6 3.0006 5.2991 8.7361 18 1 3.2268 6.0348 7.9785 19 6 2.9274 5.6739 10.0609 20 7 3.1335 6.9273 10.4020 21 14 2.5369 4.4014 11.3715 22 1 3.7999 3.7995 11.8691 23 1 1.8221 5.0540 12.4977 24 1 1.6779 3.3390 10.7894 25 6 1.7207 2.1933 3.7287 26 1 -0.3633 0.5318 0.8793 27 1 -0.3633 0.4956 -0.9002 28 1 -0.3633 -1.0275 0.0210 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 0.5484 1.9236 -1.3995 32 1 1.8006 3.1550 -1.1101 33 1 2.2268 0.4832 -2.5231 34 1 2.1082 2.0704 -3.3199 35 1 3.4763 1.7182 -2.2371 36 1 0.4797 2.0272 1.2766 37 1 1.8489 3.1538 1.1205 38 1 4.2924 1.0267 1.9398 39 1 3.9417 2.7798 2.0718 40 1 4.4554 0.7593 4.2487 41 1 4.7803 2.5138 4.2392 42 1 3.9067 4.0165 6.5253 43 1 2.1696 4.3543 6.3339 44 1 1.7617 3.5640 8.6489 45 1 3.4988 3.2263 8.8395 46 1 3.0824 7.1909 11.3341 47 1 1.5818 3.2594 3.5496 48 1 0.7916 1.7421 4.0769 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173918597.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:00:33 Heat of formation + Delta-G solvation = -98.012486 kcal Electronic energy + Delta-G solvation = -25534.326212 eV Core-core repulsion = 21943.174392 eV Total energy + Delta-G solvation = -3591.151820 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.22937 -38.47456 -38.22561 -37.06893 -35.91083 -33.48731 -33.21038 -32.05319 -30.48455 -29.44075 -27.89621 -25.83238 -24.72865 -23.44695 -22.78357 -21.55177 -20.38006 -19.94502 -19.36785 -18.49581 -17.65824 -17.10883 -16.89082 -16.84099 -16.42520 -16.10344 -15.39938 -15.13829 -14.93291 -14.76790 -14.67076 -14.33127 -14.09329 -13.90418 -13.81931 -13.47966 -13.28749 -13.21192 -13.08952 -13.02919 -13.01377 -12.96374 -12.66071 -12.43985 -12.24944 -12.22492 -11.99229 -11.96818 -11.84140 -11.73509 -11.71221 -11.48442 -11.30315 -11.13983 -10.85739 -9.89903 -9.11179 -8.37939 -6.43837 -0.78774 1.31192 1.32743 1.43124 1.69319 2.28433 2.78350 2.92555 2.95803 3.12608 3.59727 3.80889 3.89100 3.91294 4.06966 4.11454 4.28649 4.37554 4.39648 4.42484 4.48530 4.54162 4.54974 4.59549 4.65967 4.71515 4.74845 4.80178 4.91839 4.99529 5.02690 5.04181 5.07964 5.12676 5.17742 5.18694 5.21213 5.25529 5.32378 5.44760 5.45926 5.50594 5.54624 6.15271 6.21745 6.25301 6.61903 7.20492 8.77585 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.027256 B = 0.002659 C = 0.002593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.043965 B =10528.438262 C =10793.987184 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.044 3.956 3 N -0.537 5.537 4 C 0.044 3.956 5 C -0.142 4.142 6 C 0.063 3.937 7 C -0.086 4.086 8 H 0.083 0.917 9 C -0.097 4.097 10 C 0.105 3.895 11 N -1.013 6.013 12 S 2.634 3.366 13 O -0.987 6.987 14 O -0.987 6.987 15 C -0.587 4.587 16 C -0.017 4.017 17 C -0.527 4.527 18 H 0.049 0.951 19 C 0.013 3.987 20 N -0.939 5.939 21 Si 0.926 3.074 22 H -0.260 1.260 23 H -0.273 1.273 24 H -0.250 1.250 25 C 0.110 3.890 26 H 0.053 0.947 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.080 0.920 30 H 0.074 0.926 31 H 0.040 0.960 32 H 0.074 0.926 33 H 0.052 0.948 34 H 0.064 0.936 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.084 0.916 38 H 0.091 0.909 39 H 0.086 0.914 40 H 0.064 0.936 41 H 0.074 0.926 42 H 0.138 0.862 43 H 0.138 0.862 44 H 0.032 0.968 45 H 0.031 0.969 46 H 0.270 0.730 47 H 0.084 0.916 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.768 -13.068 -26.725 29.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.084 4.084 3 N -0.261 5.261 4 C -0.084 4.084 5 C -0.200 4.200 6 C -0.065 4.065 7 C -0.106 4.106 8 H 0.101 0.899 9 C -0.136 4.136 10 C -0.019 4.019 11 N -0.852 5.852 12 S 2.732 3.268 13 O -0.978 6.978 14 O -0.978 6.978 15 C -0.718 4.718 16 C -0.056 4.056 17 C -0.566 4.566 18 H 0.067 0.933 19 C -0.186 4.186 20 N -0.579 5.579 21 Si 0.748 3.252 22 H -0.185 1.185 23 H -0.198 1.198 24 H -0.174 1.174 25 C -0.015 4.015 26 H 0.072 0.928 27 H 0.077 0.923 28 H 0.083 0.917 29 H 0.098 0.902 30 H 0.092 0.908 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.075 0.925 36 H 0.063 0.937 37 H 0.103 0.897 38 H 0.110 0.890 39 H 0.104 0.896 40 H 0.083 0.917 41 H 0.092 0.908 42 H 0.156 0.844 43 H 0.156 0.844 44 H 0.050 0.950 45 H 0.049 0.951 46 H 0.079 0.921 47 H 0.102 0.898 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.448 -13.732 -25.955 29.465 hybrid contribution -0.856 0.652 0.915 1.413 sum -3.305 -13.080 -25.039 28.442 Atomic orbital electron populations 1.22399 0.98184 1.02645 1.01857 1.22228 0.92953 0.90237 1.02952 1.62224 1.59603 1.02429 1.01826 1.22166 0.97851 0.98498 0.89864 1.21724 1.00538 1.01009 0.96744 1.22065 0.97690 0.98234 0.88513 1.22294 0.95948 1.00247 0.92148 0.89921 1.22505 0.95120 1.03799 0.92201 1.22017 0.84715 1.01544 0.93641 1.58415 1.17401 1.87487 1.21904 1.04108 0.72938 0.77633 0.72126 1.93497 1.36633 1.82983 1.84684 1.93502 1.58614 1.65796 1.79874 1.30330 1.12534 1.23183 1.05769 1.19375 0.97812 0.98083 0.90336 1.21160 1.48653 0.93244 0.93588 0.93281 1.25887 0.94325 0.97289 1.01063 1.70012 1.50789 1.18258 1.18826 0.86013 0.80031 0.79988 0.79142 1.18483 1.19771 1.17375 1.22263 0.89654 1.01520 0.88088 0.92765 0.92287 0.91743 0.90169 0.90781 0.94194 0.90769 0.92855 0.91707 0.92501 0.93704 0.89720 0.88999 0.89564 0.91744 0.90761 0.84409 0.84361 0.94969 0.95116 0.92079 0.89815 0.90735 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.15 9.28 71.99 0.67 -1.48 16 2 C 0.04 0.51 5.72 86.31 0.49 1.00 16 3 N -0.54 -6.51 4.56 -896.25 -4.09 -10.60 16 4 C 0.04 0.46 5.56 86.30 0.48 0.94 16 5 C -0.14 -1.34 9.96 71.98 0.72 -0.62 16 6 C 0.06 0.80 4.17 86.30 0.36 1.16 16 7 C -0.09 -1.33 2.94 -9.40 -0.03 -1.36 16 8 H 0.08 1.35 6.40 -2.39 -0.02 1.33 16 9 C -0.10 -1.46 6.32 31.78 0.20 -1.25 16 10 C 0.11 2.18 6.90 86.73 0.60 2.78 16 11 N -1.01 -25.61 3.62 -506.42 -1.83 -27.44 16 12 S 2.63 89.99 5.65 -56.49 -0.32 89.67 16 13 O -0.99 -38.63 17.28 -127.65 -2.21 -40.83 16 14 O -0.99 -38.88 17.60 -127.65 -2.25 -41.13 16 15 C -0.59 -21.51 6.12 71.98 0.44 -21.07 16 16 C -0.02 -0.81 4.05 29.85 0.12 -0.69 16 17 C -0.53 -30.12 9.66 25.60 0.25 -29.87 16 18 H 0.05 2.99 7.99 -2.91 -0.02 2.96 16 19 C 0.01 0.76 5.47 84.65 0.46 1.22 16 20 N -0.94 -58.03 13.96 21.45 0.30 -57.73 16 21 Si 0.93 44.20 27.47 68.60 1.88 46.08 16 22 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 23 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 24 H -0.25 -11.37 6.54 99.48 0.65 -10.72 16 25 C 0.11 2.22 6.54 86.85 0.57 2.79 16 26 H 0.05 0.69 6.23 -2.39 -0.01 0.67 16 27 H 0.06 0.63 6.30 -2.39 -0.02 0.62 16 28 H 0.06 0.67 8.14 -2.38 -0.02 0.65 16 29 H 0.08 0.85 6.58 -2.39 -0.02 0.83 16 30 H 0.07 0.93 6.35 -2.39 -0.02 0.91 16 31 H 0.04 0.42 5.91 -2.39 -0.01 0.40 16 32 H 0.07 0.76 7.81 -2.39 -0.02 0.74 16 33 H 0.05 0.50 6.69 -2.38 -0.02 0.49 16 34 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.04 0.57 6.00 -2.39 -0.01 0.56 16 37 H 0.08 1.00 7.76 -2.39 -0.02 0.98 16 38 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 39 H 0.09 1.15 7.96 -2.39 -0.02 1.13 16 40 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 41 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 43 H 0.14 4.61 8.14 -2.39 -0.02 4.59 16 44 H 0.03 1.52 7.20 -2.39 -0.02 1.50 16 45 H 0.03 1.43 7.57 -2.39 -0.02 1.42 16 46 H 0.27 15.52 8.31 -92.71 -0.77 14.75 16 47 H 0.08 1.42 8.04 -2.39 -0.02 1.40 16 48 H 0.07 1.63 7.67 -2.39 -0.02 1.61 16 Total: -1.00 -72.66 379.48 -2.31 -74.97 By element: Atomic # 1 Polarization: 12.59 SS G_CDS: 0.87 Total: 13.45 kcal Atomic # 6 Polarization: -51.78 SS G_CDS: 5.33 Total: -46.45 kcal Atomic # 7 Polarization: -90.15 SS G_CDS: -5.62 Total: -95.77 kcal Atomic # 8 Polarization: -77.51 SS G_CDS: -4.45 Total: -81.96 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 89.99 SS G_CDS: -0.32 Total: 89.67 kcal Total: -72.66 -2.31 -74.97 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173918597.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.039 kcal (2) G-P(sol) polarization free energy of solvation -72.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds