Wall clock time and date at job start Tue Mar 31 2020 12:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46654 * 2 1 4 4 C 1.46908 * 110.99636 * 81.71390 * 3 2 1 5 5 C 1.52997 * 109.46869 * 286.21525 * 4 3 2 6 6 C 1.46903 * 111.00003 * 205.66131 * 3 2 1 7 7 H 1.08999 * 110.88521 * 53.93205 * 6 3 2 8 8 C 1.55154 * 111.00721 * 290.04619 * 6 3 2 9 9 C 1.54322 * 102.94454 * 206.38374 * 8 6 3 10 10 N 1.47026 * 107.27034 * 22.19560 * 9 8 6 11 11 S 1.65601 * 125.64944 * 181.02204 * 10 9 8 12 12 O 1.42095 * 104.27360 * 333.95247 * 11 10 9 13 13 O 1.42098 * 104.27267 * 206.09694 * 11 10 9 14 14 C 1.81397 * 104.44742 * 90.02391 * 11 10 9 15 15 C 1.52999 * 109.46852 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47182 * 180.02562 * 15 14 11 17 17 C 1.50700 * 109.47568 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99692 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00547 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99975 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47087 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47059 * 239.99717 * 21 19 17 24 24 H 1.48504 * 109.47179 * 119.99866 * 21 19 17 25 25 C 1.47434 * 108.70056 * 1.28422 * 10 9 8 26 26 H 1.08998 * 109.47084 * 289.70925 * 1 2 3 27 27 H 1.08992 * 109.47346 * 49.71177 * 1 2 3 28 28 H 1.09008 * 109.46835 * 169.71318 * 1 2 3 29 29 H 1.08994 * 109.47330 * 240.00704 * 2 1 3 30 30 H 1.08998 * 109.47506 * 120.00027 * 2 1 3 31 31 H 1.08998 * 109.47258 * 46.21881 * 4 3 2 32 32 H 1.09001 * 109.46712 * 166.21978 * 4 3 2 33 33 H 1.09003 * 109.47785 * 319.31604 * 5 4 3 34 34 H 1.09005 * 109.46800 * 79.31846 * 5 4 3 35 35 H 1.09002 * 109.47439 * 199.30782 * 5 4 3 36 36 H 1.09007 * 110.71544 * 88.02155 * 8 6 3 37 37 H 1.09001 * 110.72208 * 324.75186 * 8 6 3 38 38 H 1.08995 * 109.88216 * 262.78202 * 9 8 6 39 39 H 1.08998 * 109.87822 * 141.61097 * 9 8 6 40 40 H 1.09007 * 109.47183 * 60.00131 * 14 11 10 41 41 H 1.08999 * 109.47545 * 299.99762 * 14 11 10 42 42 H 1.09007 * 109.47069 * 60.00123 * 15 14 11 43 43 H 1.09000 * 109.47587 * 299.99921 * 15 14 11 44 44 H 1.09000 * 109.47485 * 60.00099 * 16 15 14 45 45 H 1.09005 * 109.46894 * 299.99911 * 16 15 14 46 46 H 0.97005 * 119.99487 * 0.02562 * 20 19 17 47 47 H 1.08997 * 110.36383 * 94.48450 * 25 10 9 48 48 H 1.08999 * 110.36199 * 216.80333 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0086 1.9472 1.3572 5 6 0.5676 2.2515 1.7715 6 6 3.3605 1.4695 -0.5939 7 1 3.3752 1.0183 -1.5860 8 6 4.4205 0.8146 0.3306 9 6 5.7183 1.5571 -0.0512 10 7 5.3262 2.8386 -0.6559 11 16 6.3648 3.9829 -1.2511 12 8 7.5688 3.7744 -0.5259 13 8 5.6440 5.2024 -1.1393 14 6 6.5852 3.5312 -2.9941 15 6 7.5358 4.5264 -3.6625 16 6 7.7212 4.1459 -5.1328 17 6 8.6580 5.1258 -5.7911 18 1 9.0793 5.9385 -5.2180 19 6 8.9771 4.9849 -7.1250 20 7 8.4645 3.9950 -7.8228 21 14 10.1388 6.1991 -7.9407 22 1 10.5747 7.2118 -6.9460 23 1 9.4395 6.8763 -9.0621 24 1 11.3255 5.4746 -8.4627 25 6 3.8554 2.9390 -0.6388 26 1 -0.3633 0.3466 0.9674 27 1 -0.3633 0.6645 -0.7838 28 1 -0.3633 -1.0112 -0.1835 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4423 1.2280 2.0519 32 1 2.5934 2.8669 1.3742 33 1 0.0289 2.6791 0.9259 34 1 0.0777 1.3299 2.0860 35 1 0.5694 2.9621 2.5981 36 1 4.5099 -0.2513 0.1203 37 1 4.1743 0.9825 1.3791 38 1 6.2857 0.9662 -0.7702 39 1 6.3189 1.7364 0.8406 40 1 5.6202 3.5549 -3.5004 41 1 7.0051 2.5275 -3.0591 42 1 8.5009 4.5032 -3.1563 43 1 7.1155 5.5301 -3.5977 44 1 6.7560 4.1694 -5.6388 45 1 8.1413 3.1422 -5.1981 46 1 7.8615 3.3642 -7.3990 47 1 3.5225 3.4811 0.2462 48 1 3.4983 3.4317 -1.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000173988791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:16 Heat of formation + Delta-G solvation = -73.640824 kcal Electronic energy + Delta-G solvation = -25540.312317 eV Core-core repulsion = 21950.217331 eV Total energy + Delta-G solvation = -3590.094985 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.98308 -36.99292 -36.82806 -35.82053 -34.92936 -32.28891 -31.64213 -31.52713 -29.80454 -27.65913 -27.44282 -23.64292 -23.42042 -22.63735 -22.35078 -20.88052 -20.01127 -18.95131 -17.80423 -17.07871 -16.81398 -16.11388 -15.87976 -15.71858 -15.43393 -14.69653 -14.43287 -13.97894 -13.79447 -13.68371 -13.67568 -13.27643 -13.10768 -12.94777 -12.83219 -12.46517 -12.07534 -12.07026 -12.01851 -11.96290 -11.88913 -11.80058 -11.69482 -11.50072 -11.44844 -11.29457 -10.95690 -10.80428 -10.79935 -10.59350 -10.14245 -10.10443 -9.83997 -9.10189 -8.69597 -8.57311 -8.37027 -6.41436 -4.11196 0.32369 2.64757 3.40392 3.43266 3.46899 3.60978 3.92733 4.07073 4.21440 4.40382 4.51360 4.51838 4.61226 4.72623 4.89639 4.94016 5.00733 5.03543 5.05602 5.11704 5.15664 5.19502 5.29228 5.35408 5.36683 5.40309 5.46782 5.50951 5.62026 5.64440 5.72643 5.75840 5.79470 5.89809 5.92504 6.04971 6.08703 6.22249 6.30546 6.69929 6.70713 6.72845 7.25957 7.37853 8.13000 8.41760 8.82824 9.61193 10.99452 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002610 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.606189 B =10725.098897 C =11280.998230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.053 3.947 3 N -0.526 5.526 4 C 0.038 3.962 5 C -0.152 4.152 6 C 0.073 3.927 7 H 0.103 0.897 8 C -0.165 4.165 9 C 0.124 3.876 10 N -1.018 6.018 11 S 2.617 3.383 12 O -0.956 6.956 13 O -0.955 6.955 14 C -0.611 4.611 15 C -0.098 4.098 16 C 0.017 3.983 17 C -0.606 4.606 18 H 0.053 0.947 19 C 0.015 3.985 20 N -0.913 5.913 21 Si 1.075 2.925 22 H -0.288 1.288 23 H -0.286 1.286 24 H -0.286 1.286 25 C 0.126 3.874 26 H 0.064 0.936 27 H 0.064 0.936 28 H 0.053 0.947 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.039 0.961 32 H 0.081 0.919 33 H 0.068 0.932 34 H 0.057 0.943 35 H 0.056 0.944 36 H 0.080 0.920 37 H 0.079 0.921 38 H 0.068 0.932 39 H 0.072 0.928 40 H 0.127 0.873 41 H 0.126 0.874 42 H 0.067 0.933 43 H 0.067 0.933 44 H 0.012 0.988 45 H 0.011 0.989 46 H 0.269 0.731 47 H 0.077 0.923 48 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.755 -10.171 19.655 27.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.075 4.075 3 N -0.249 5.249 4 C -0.089 4.089 5 C -0.209 4.209 6 C -0.038 4.038 7 H 0.121 0.879 8 C -0.205 4.205 9 C -0.002 4.002 10 N -0.855 5.855 11 S 2.714 3.286 12 O -0.947 6.947 13 O -0.945 6.945 14 C -0.743 4.743 15 C -0.138 4.138 16 C -0.021 4.021 17 C -0.645 4.645 18 H 0.071 0.929 19 C -0.189 4.189 20 N -0.549 5.549 21 Si 0.903 3.097 22 H -0.214 1.214 23 H -0.213 1.213 24 H -0.213 1.213 25 C 0.000 4.000 26 H 0.082 0.918 27 H 0.083 0.917 28 H 0.072 0.928 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.057 0.943 32 H 0.100 0.900 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.075 0.925 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.090 0.910 40 H 0.145 0.855 41 H 0.144 0.856 42 H 0.086 0.914 43 H 0.086 0.914 44 H 0.030 0.970 45 H 0.029 0.971 46 H 0.079 0.921 47 H 0.095 0.905 48 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -14.934 -8.737 18.442 25.287 hybrid contribution -0.319 -1.450 1.370 2.020 sum -15.252 -10.187 19.812 26.998 Atomic orbital electron populations 1.22080 0.94827 1.01473 1.03076 1.22096 0.96406 0.88136 1.00883 1.62141 1.22355 1.19673 1.20779 1.22348 0.98167 0.99993 0.88437 1.22032 0.96121 1.01324 1.01468 1.23093 0.86514 0.95601 0.98570 0.87941 1.23348 0.95643 1.00367 1.01140 1.21589 0.96820 0.83536 0.98248 1.58825 1.17099 1.33901 1.75667 1.04975 0.72916 0.73074 0.77620 1.93563 1.45938 1.85401 1.69778 1.93572 1.72407 1.41909 1.86629 1.30619 1.10096 1.10886 1.22698 1.21362 0.96193 0.95835 1.00406 1.19190 0.96961 0.97044 0.88907 1.22125 1.30451 1.14065 0.97827 0.92901 1.25895 0.98927 0.99461 0.94586 1.70742 1.30272 1.14514 1.39422 0.83461 0.75781 0.75025 0.75410 1.21391 1.21253 1.21265 1.22082 0.78470 0.96311 1.03129 0.91777 0.91666 0.92759 0.91099 0.94369 0.94331 0.90034 0.91285 0.92387 0.92545 0.90108 0.90276 0.91411 0.90982 0.85485 0.85568 0.91437 0.91394 0.97005 0.97060 0.92102 0.90544 0.89915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.93 9.42 37.16 0.35 -0.58 16 2 C 0.05 0.34 5.32 -3.82 -0.02 0.32 16 3 N -0.53 -3.99 4.47 -223.94 -1.00 -4.99 16 4 C 0.04 0.27 4.55 -3.82 -0.02 0.25 16 5 C -0.15 -0.95 8.66 37.16 0.32 -0.63 16 6 C 0.07 0.59 3.07 -65.45 -0.20 0.39 16 7 H 0.10 0.81 7.96 -51.93 -0.41 0.40 16 8 C -0.16 -1.21 5.92 -24.90 -0.15 -1.36 16 9 C 0.12 1.19 6.89 -3.06 -0.02 1.17 16 10 N -1.02 -11.87 3.62 -111.29 -0.40 -12.27 16 11 S 2.62 39.92 5.65 -107.50 -0.61 39.32 16 12 O -0.96 -17.16 17.60 -57.54 -1.01 -18.17 16 13 O -0.95 -17.17 17.60 -57.54 -1.01 -18.19 16 14 C -0.61 -9.60 6.18 37.16 0.23 -9.37 16 15 C -0.10 -2.05 5.16 -26.73 -0.14 -2.18 16 16 C 0.02 0.44 4.28 -27.88 -0.12 0.32 16 17 C -0.61 -17.47 9.11 -34.44 -0.31 -17.78 16 18 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 19 C 0.01 0.44 5.46 -17.82 -0.10 0.34 16 20 N -0.91 -28.00 13.65 55.43 0.76 -27.24 16 21 Si 1.07 25.60 29.90 -169.99 -5.08 20.51 16 22 H -0.29 -6.53 7.11 56.52 0.40 -6.13 16 23 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 25 C 0.13 1.28 6.38 -2.41 -0.02 1.26 16 26 H 0.06 0.36 4.87 -51.93 -0.25 0.11 16 27 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 28 H 0.05 0.28 8.14 -51.92 -0.42 -0.15 16 29 H 0.07 0.44 7.73 -51.93 -0.40 0.04 16 30 H 0.04 0.23 7.64 -51.93 -0.40 -0.16 16 31 H 0.04 0.26 6.51 -51.93 -0.34 -0.08 16 32 H 0.08 0.64 5.41 -51.93 -0.28 0.36 16 33 H 0.07 0.49 8.12 -51.93 -0.42 0.06 16 34 H 0.06 0.32 5.77 -51.93 -0.30 0.02 16 35 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.56 5.98 -51.93 -0.31 0.25 16 38 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.13 1.79 8.14 -51.92 -0.42 1.37 16 41 H 0.13 1.77 8.14 -51.92 -0.42 1.34 16 42 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 44 H 0.01 0.31 8.01 -51.93 -0.42 -0.11 16 45 H 0.01 0.29 8.01 -51.93 -0.42 -0.12 16 46 H 0.27 8.14 7.22 -40.82 -0.29 7.84 16 47 H 0.08 0.77 5.58 -51.93 -0.29 0.48 16 48 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 380.32 15.07 5.73 5.73 Total: -1.00 -35.05 380.32 -11.21 -46.25 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -8.38 Total: -3.10 kcal Atomic # 6 Polarization: -27.66 SS G_CDS: -0.19 Total: -27.85 kcal Atomic # 7 Polarization: -43.86 SS G_CDS: -0.65 Total: -44.51 kcal Atomic # 8 Polarization: -34.33 SS G_CDS: -2.03 Total: -36.36 kcal Atomic # 14 Polarization: 25.60 SS G_CDS: -5.08 Total: 20.51 kcal Atomic # 16 Polarization: 39.92 SS G_CDS: -0.61 Total: 39.32 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.05 -11.21 -46.25 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173988791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.387 kcal (2) G-P(sol) polarization free energy of solvation -35.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.206 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.254 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.641 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds