Wall clock time and date at job start Tue Mar 31 2020 12:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46903 * 109.46654 * 2 1 4 4 C 1.46908 * 110.99636 * 81.71390 * 3 2 1 5 5 C 1.52997 * 109.46869 * 286.21525 * 4 3 2 6 6 C 1.46903 * 111.00003 * 205.66131 * 3 2 1 7 7 H 1.08999 * 110.88521 * 53.93205 * 6 3 2 8 8 C 1.55154 * 111.00721 * 290.04619 * 6 3 2 9 9 C 1.54322 * 102.94454 * 206.38374 * 8 6 3 10 10 N 1.47026 * 107.27034 * 22.19560 * 9 8 6 11 11 S 1.65601 * 125.64944 * 181.02204 * 10 9 8 12 12 O 1.42095 * 104.27360 * 333.95247 * 11 10 9 13 13 O 1.42098 * 104.27267 * 206.09694 * 11 10 9 14 14 C 1.81397 * 104.44742 * 90.02391 * 11 10 9 15 15 C 1.52999 * 109.46852 * 179.97438 * 14 11 10 16 16 C 1.52998 * 109.47182 * 180.02562 * 15 14 11 17 17 C 1.50700 * 109.47568 * 180.02562 * 16 15 14 18 18 H 1.08002 * 119.99692 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00547 * 180.02562 * 17 16 15 20 20 N 1.31519 * 119.99975 * 359.97438 * 19 17 16 21 21 Si 1.86795 * 120.00206 * 180.02562 * 19 17 16 22 22 H 1.48494 * 109.47087 * 359.97438 * 21 19 17 23 23 H 1.48503 * 109.47059 * 239.99717 * 21 19 17 24 24 H 1.48504 * 109.47179 * 119.99866 * 21 19 17 25 25 C 1.47434 * 108.70056 * 1.28422 * 10 9 8 26 26 H 1.08998 * 109.47084 * 289.70925 * 1 2 3 27 27 H 1.08992 * 109.47346 * 49.71177 * 1 2 3 28 28 H 1.09008 * 109.46835 * 169.71318 * 1 2 3 29 29 H 1.08994 * 109.47330 * 240.00704 * 2 1 3 30 30 H 1.08998 * 109.47506 * 120.00027 * 2 1 3 31 31 H 1.08998 * 109.47258 * 46.21881 * 4 3 2 32 32 H 1.09001 * 109.46712 * 166.21978 * 4 3 2 33 33 H 1.09003 * 109.47785 * 319.31604 * 5 4 3 34 34 H 1.09005 * 109.46800 * 79.31846 * 5 4 3 35 35 H 1.09002 * 109.47439 * 199.30782 * 5 4 3 36 36 H 1.09007 * 110.71544 * 88.02155 * 8 6 3 37 37 H 1.09001 * 110.72208 * 324.75186 * 8 6 3 38 38 H 1.08995 * 109.88216 * 262.78202 * 9 8 6 39 39 H 1.08998 * 109.87822 * 141.61097 * 9 8 6 40 40 H 1.09007 * 109.47183 * 60.00131 * 14 11 10 41 41 H 1.08999 * 109.47545 * 299.99762 * 14 11 10 42 42 H 1.09007 * 109.47069 * 60.00123 * 15 14 11 43 43 H 1.09000 * 109.47587 * 299.99921 * 15 14 11 44 44 H 1.09000 * 109.47485 * 60.00099 * 16 15 14 45 45 H 1.09005 * 109.46894 * 299.99911 * 16 15 14 46 46 H 0.97005 * 119.99487 * 0.02562 * 20 19 17 47 47 H 1.08997 * 110.36383 * 94.48450 * 25 10 9 48 48 H 1.08999 * 110.36199 * 216.80333 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3851 0.0000 4 6 2.0086 1.9472 1.3572 5 6 0.5676 2.2515 1.7715 6 6 3.3605 1.4695 -0.5939 7 1 3.3752 1.0183 -1.5860 8 6 4.4205 0.8146 0.3306 9 6 5.7183 1.5571 -0.0512 10 7 5.3262 2.8386 -0.6559 11 16 6.3648 3.9829 -1.2511 12 8 7.5688 3.7744 -0.5259 13 8 5.6440 5.2024 -1.1393 14 6 6.5852 3.5312 -2.9941 15 6 7.5358 4.5264 -3.6625 16 6 7.7212 4.1459 -5.1328 17 6 8.6580 5.1258 -5.7911 18 1 9.0793 5.9385 -5.2180 19 6 8.9771 4.9849 -7.1250 20 7 8.4645 3.9950 -7.8228 21 14 10.1388 6.1991 -7.9407 22 1 10.5747 7.2118 -6.9460 23 1 9.4395 6.8763 -9.0621 24 1 11.3255 5.4746 -8.4627 25 6 3.8554 2.9390 -0.6388 26 1 -0.3633 0.3466 0.9674 27 1 -0.3633 0.6645 -0.7838 28 1 -0.3633 -1.0112 -0.1835 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8899 31 1 2.4423 1.2280 2.0519 32 1 2.5934 2.8669 1.3742 33 1 0.0289 2.6791 0.9259 34 1 0.0777 1.3299 2.0860 35 1 0.5694 2.9621 2.5981 36 1 4.5099 -0.2513 0.1203 37 1 4.1743 0.9825 1.3791 38 1 6.2857 0.9662 -0.7702 39 1 6.3189 1.7364 0.8406 40 1 5.6202 3.5549 -3.5004 41 1 7.0051 2.5275 -3.0591 42 1 8.5009 4.5032 -3.1563 43 1 7.1155 5.5301 -3.5977 44 1 6.7560 4.1694 -5.6388 45 1 8.1413 3.1422 -5.1981 46 1 7.8615 3.3642 -7.3990 47 1 3.5225 3.4811 0.2462 48 1 3.4983 3.4317 -1.5432 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173988791.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:15 Heat of formation + Delta-G solvation = -98.413805 kcal Electronic energy + Delta-G solvation = -25541.386554 eV Core-core repulsion = 21950.217331 eV Total energy + Delta-G solvation = -3591.169223 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.64357 -38.33209 -37.53113 -37.17280 -36.80770 -34.26633 -32.31017 -32.03035 -30.50830 -29.34751 -28.29827 -25.50489 -24.13644 -23.43452 -23.04090 -22.54646 -20.62119 -20.07026 -19.18746 -18.70865 -17.80963 -17.27342 -17.03208 -16.50458 -16.05167 -15.95249 -15.69555 -15.43174 -15.26643 -14.70866 -14.57715 -14.37305 -13.95925 -13.70519 -13.63259 -13.48607 -13.44137 -13.35304 -13.28197 -13.16439 -13.13239 -12.67144 -12.64022 -12.54652 -12.49858 -12.32877 -12.15575 -11.94805 -11.91365 -11.87593 -11.57312 -11.53436 -11.09525 -10.73002 -10.58435 -9.99343 -9.25037 -8.73528 -6.44508 -0.92238 1.51156 1.55245 1.60251 1.77604 2.52994 2.68155 2.76100 3.06783 3.11485 3.42468 3.62438 3.67863 3.79046 3.93345 4.02565 4.17469 4.21300 4.31712 4.34787 4.43633 4.45611 4.48197 4.54256 4.65181 4.71507 4.74908 4.77477 4.81345 4.83945 4.92165 4.96206 4.99321 5.03948 5.10552 5.21129 5.23023 5.24371 5.31020 5.34967 5.40424 5.58688 5.92854 6.12877 6.14024 6.19887 6.53312 7.36562 8.68107 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.021962 B = 0.002610 C = 0.002481 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1274.606189 B =10725.098897 C =11280.998230 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.052 3.948 3 N -0.534 5.534 4 C 0.037 3.963 5 C -0.148 4.148 6 C 0.079 3.921 7 H 0.108 0.892 8 C -0.153 4.153 9 C 0.113 3.887 10 N -1.012 6.012 11 S 2.643 3.357 12 O -0.983 6.983 13 O -0.984 6.984 14 C -0.609 4.609 15 C -0.100 4.100 16 C 0.015 3.985 17 C -0.628 4.628 18 H 0.051 0.949 19 C -0.037 4.037 20 N -0.936 5.936 21 Si 1.121 2.879 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.276 1.276 25 C 0.116 3.884 26 H 0.066 0.934 27 H 0.052 0.948 28 H 0.062 0.938 29 H 0.074 0.926 30 H 0.046 0.954 31 H 0.046 0.954 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.066 0.934 35 H 0.060 0.940 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.068 0.932 40 H 0.144 0.856 41 H 0.145 0.855 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.000 1.000 45 H 0.001 0.999 46 H 0.258 0.742 47 H 0.077 0.923 48 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.240 -11.064 20.515 28.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.075 4.075 3 N -0.258 5.258 4 C -0.091 4.091 5 C -0.206 4.206 6 C -0.032 4.032 7 H 0.126 0.874 8 C -0.193 4.193 9 C -0.013 4.013 10 N -0.852 5.852 11 S 2.741 3.259 12 O -0.974 6.974 13 O -0.974 6.974 14 C -0.740 4.740 15 C -0.139 4.139 16 C -0.023 4.023 17 C -0.666 4.666 18 H 0.069 0.931 19 C -0.235 4.235 20 N -0.573 5.573 21 Si 0.942 3.058 22 H -0.197 1.197 23 H -0.202 1.202 24 H -0.201 1.201 25 C -0.009 4.009 26 H 0.085 0.915 27 H 0.072 0.928 28 H 0.081 0.919 29 H 0.092 0.908 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.085 0.915 35 H 0.079 0.921 36 H 0.119 0.881 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.087 0.913 40 H 0.162 0.838 41 H 0.163 0.837 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.019 0.981 45 H 0.019 0.981 46 H 0.068 0.932 47 H 0.095 0.905 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -15.427 -9.636 19.314 26.531 hybrid contribution -0.246 -1.225 1.164 1.708 sum -15.673 -10.861 20.478 27.982 Atomic orbital electron populations 1.22050 0.94582 1.01740 1.02793 1.22139 0.96573 0.87417 1.01387 1.62147 1.21945 1.20607 1.21079 1.22363 0.98515 0.99730 0.88443 1.21997 0.95585 1.01797 1.01190 1.23021 0.87035 0.93954 0.99195 0.87419 1.23316 0.93821 1.01049 1.01164 1.21878 0.98268 0.82718 0.98387 1.58458 1.17456 1.34249 1.74988 1.03899 0.72348 0.72769 0.76919 1.93522 1.47698 1.85894 1.70278 1.93530 1.72952 1.44083 1.86873 1.30559 1.09818 1.10422 1.23186 1.21192 0.97655 0.97197 0.97875 1.19131 0.95539 0.95839 0.91797 1.22595 1.30954 1.14621 0.98437 0.93110 1.27434 0.99923 1.00375 0.95741 1.70867 1.31286 1.15445 1.39724 0.82886 0.74254 0.73440 0.75217 1.19653 1.20173 1.20145 1.22289 0.77344 0.98144 1.03136 0.91505 0.92847 0.91863 0.90777 0.93604 0.93572 0.91010 0.92279 0.91535 0.92123 0.88106 0.89835 0.90151 0.91346 0.83799 0.83661 0.91574 0.91636 0.98146 0.98106 0.93242 0.90547 0.90115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.55 9.42 71.98 0.68 -0.87 16 2 C 0.05 0.55 5.32 86.30 0.46 1.01 16 3 N -0.53 -7.12 4.47 -862.42 -3.86 -10.98 16 4 C 0.04 0.46 4.55 86.30 0.39 0.86 16 5 C -0.15 -1.65 8.66 71.98 0.62 -1.02 16 6 C 0.08 1.11 3.07 46.38 0.14 1.26 16 7 H 0.11 1.44 7.96 -2.39 -0.02 1.42 16 8 C -0.15 -1.85 5.92 31.78 0.19 -1.66 16 9 C 0.11 1.93 6.89 86.73 0.60 2.53 16 10 N -1.01 -22.32 3.62 -506.00 -1.83 -24.15 16 11 S 2.64 79.06 5.65 -56.49 -0.32 78.74 16 12 O -0.98 -34.81 17.60 -127.65 -2.25 -37.05 16 13 O -0.98 -35.23 17.60 -127.65 -2.25 -37.48 16 14 C -0.61 -18.64 6.18 71.98 0.44 -18.19 16 15 C -0.10 -4.16 5.16 30.59 0.16 -4.01 16 16 C 0.02 0.78 4.28 29.85 0.13 0.91 16 17 C -0.63 -36.53 9.11 25.60 0.23 -36.29 16 18 H 0.05 2.90 7.74 -2.91 -0.02 2.87 16 19 C -0.04 -2.17 5.46 84.65 0.46 -1.71 16 20 N -0.94 -57.92 13.65 21.45 0.29 -57.63 16 21 Si 1.12 50.94 29.90 68.60 2.05 53.00 16 22 H -0.27 -11.50 7.11 99.48 0.71 -10.79 16 23 H -0.28 -12.05 7.11 99.48 0.71 -11.34 16 24 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 25 C 0.12 2.22 6.38 86.93 0.55 2.78 16 26 H 0.07 0.62 4.87 -2.39 -0.01 0.61 16 27 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 28 H 0.06 0.52 8.14 -2.38 -0.02 0.50 16 29 H 0.07 0.74 7.73 -2.39 -0.02 0.73 16 30 H 0.05 0.43 7.64 -2.39 -0.02 0.41 16 31 H 0.05 0.51 6.51 -2.39 -0.02 0.49 16 32 H 0.07 1.04 5.41 -2.39 -0.01 1.03 16 33 H 0.06 0.78 8.12 -2.39 -0.02 0.76 16 34 H 0.07 0.62 5.77 -2.38 -0.01 0.60 16 35 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 36 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.08 0.96 5.98 -2.39 -0.01 0.95 16 38 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 39 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 40 H 0.14 3.89 8.14 -2.39 -0.02 3.88 16 41 H 0.15 3.86 8.14 -2.39 -0.02 3.84 16 42 H 0.07 2.72 8.14 -2.38 -0.02 2.71 16 43 H 0.06 2.71 8.14 -2.39 -0.02 2.69 16 44 H 0.00 0.01 8.01 -2.39 -0.02 -0.01 16 45 H 0.00 0.03 8.01 -2.38 -0.02 0.01 16 46 H 0.26 15.98 7.22 -92.70 -0.67 15.31 16 47 H 0.08 1.48 5.58 -2.39 -0.01 1.47 16 48 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 Total: -1.00 -75.02 380.32 -2.08 -77.10 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.02 Total: 12.87 kcal Atomic # 6 Polarization: -59.47 SS G_CDS: 5.06 Total: -54.41 kcal Atomic # 7 Polarization: -87.36 SS G_CDS: -5.40 Total: -92.76 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -4.49 Total: -74.53 kcal Atomic # 14 Polarization: 50.94 SS G_CDS: 2.05 Total: 53.00 kcal Atomic # 16 Polarization: 79.06 SS G_CDS: -0.32 Total: 78.74 kcal Total: -75.02 -2.08 -77.10 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173988791.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.317 kcal (2) G-P(sol) polarization free energy of solvation -75.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.337 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.414 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds