Wall clock time and date at job start Tue Mar 31 2020 12:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47447 * 2 1 4 4 C 1.46898 * 110.99708 * 296.78169 * 3 2 1 5 5 C 1.53002 * 109.47239 * 288.18511 * 4 3 2 6 6 C 1.46897 * 110.99969 * 60.73583 * 3 2 1 7 7 H 1.09006 * 110.64176 * 298.31381 * 6 3 2 8 8 C 1.55160 * 110.72180 * 61.45499 * 6 3 2 9 9 C 1.54906 * 101.57908 * 154.04299 * 8 6 3 10 10 N 1.47426 * 104.83630 * 322.98925 * 9 8 6 11 11 S 1.65594 * 125.65060 * 204.09554 * 10 9 8 12 12 O 1.42103 * 104.27663 * 333.95305 * 11 10 9 13 13 O 1.42103 * 104.27748 * 206.09708 * 11 10 9 14 14 C 1.81401 * 104.45280 * 90.02376 * 11 10 9 15 15 C 1.52997 * 109.47298 * 180.02562 * 14 11 10 16 16 C 1.53006 * 109.46914 * 180.02562 * 15 14 11 17 17 C 1.50699 * 109.46553 * 179.97438 * 16 15 14 18 18 H 1.07995 * 120.00683 * 359.97438 * 17 16 15 19 19 C 1.37879 * 119.99448 * 179.97438 * 17 16 15 20 20 N 1.31517 * 120.00048 * 180.02562 * 19 17 16 21 21 Si 1.86803 * 120.00085 * 359.97438 * 19 17 16 22 22 H 1.48499 * 109.46830 * 90.00314 * 21 19 17 23 23 H 1.48501 * 109.46917 * 210.00118 * 21 19 17 24 24 H 1.48494 * 109.46971 * 330.00018 * 21 19 17 25 25 C 1.47019 * 108.70095 * 24.35972 * 10 9 8 26 26 H 1.08995 * 109.47391 * 183.35991 * 1 2 3 27 27 H 1.08997 * 109.47232 * 303.36670 * 1 2 3 28 28 H 1.09000 * 109.46615 * 63.36179 * 1 2 3 29 29 H 1.09000 * 109.47132 * 239.99246 * 2 1 3 30 30 H 1.08999 * 109.46892 * 119.99763 * 2 1 3 31 31 H 1.09004 * 109.47320 * 48.18664 * 4 3 2 32 32 H 1.09001 * 109.47037 * 168.18234 * 4 3 2 33 33 H 1.08990 * 109.46969 * 60.01763 * 5 4 3 34 34 H 1.08996 * 109.46997 * 180.02562 * 5 4 3 35 35 H 1.09004 * 109.46426 * 300.01705 * 5 4 3 36 36 H 1.08996 * 111.00086 * 35.96643 * 8 6 3 37 37 H 1.09000 * 111.00008 * 272.11307 * 8 6 3 38 38 H 1.09007 * 110.36484 * 204.14906 * 9 8 6 39 39 H 1.09001 * 110.36944 * 81.83453 * 9 8 6 40 40 H 1.09000 * 109.46734 * 60.00026 * 14 11 10 41 41 H 1.09004 * 109.46549 * 300.00206 * 14 11 10 42 42 H 1.09004 * 109.46839 * 299.99710 * 15 14 11 43 43 H 1.09000 * 109.47600 * 59.99730 * 15 14 11 44 44 H 1.08995 * 109.46776 * 299.99212 * 16 15 14 45 45 H 1.09000 * 109.47160 * 59.99817 * 16 15 14 46 46 H 0.97002 * 120.00141 * 179.97438 * 20 19 17 47 47 H 1.08996 * 109.88574 * 118.13009 * 25 10 9 48 48 H 1.09001 * 109.88292 * 239.29748 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6126 2.0872 -1.2243 5 6 2.4161 1.5512 -2.4109 6 6 1.5632 2.1048 1.1964 7 1 0.4747 2.1566 1.2216 8 6 2.1107 1.4331 2.4835 9 6 2.1239 2.6240 3.4741 10 7 2.5201 3.7877 2.6602 11 16 3.2309 5.1692 3.2332 12 8 2.8071 5.2456 4.5874 13 8 2.8625 6.1688 2.2927 14 6 5.0113 4.8339 3.1414 15 6 5.7863 6.0509 3.6504 16 6 7.2880 5.7683 3.5723 17 6 8.0514 6.9672 4.0731 18 1 7.5189 7.8433 4.4127 19 6 9.4298 6.9457 4.0978 20 7 10.0961 7.9918 4.5353 21 14 10.3509 5.4301 3.5111 22 1 10.6264 5.5505 2.0569 23 1 11.6338 5.3137 4.2500 24 1 9.5248 4.2216 3.7602 25 6 2.1737 3.5210 1.2565 26 1 -0.3634 -1.0258 0.0602 27 1 -0.3633 0.5652 0.8582 28 1 -0.3632 0.4608 -0.9186 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8900 31 1 0.5497 1.9227 -1.4012 32 1 1.8010 3.1548 -1.1105 33 1 2.2274 0.4838 -2.5249 34 1 2.1143 2.0726 -3.3193 35 1 3.4790 1.7155 -2.2338 36 1 3.1171 1.0461 2.3243 37 1 1.4408 0.6455 2.8283 38 1 2.8517 2.4500 4.2667 39 1 1.1309 2.7770 3.8967 40 1 5.2900 4.6317 2.1072 41 1 5.2500 3.9675 3.7582 42 1 5.5475 6.9176 3.0339 43 1 5.5075 6.2528 4.6846 44 1 7.5271 4.9016 4.1885 45 1 7.5665 5.5667 2.5379 46 1 11.0658 7.9765 4.5530 47 1 1.4473 4.2550 0.9080 48 1 3.0710 3.5623 0.6390 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000173988800.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:18 Heat of formation + Delta-G solvation = -98.880260 kcal Electronic energy + Delta-G solvation = -25677.137247 eV Core-core repulsion = 22085.947797 eV Total energy + Delta-G solvation = -3591.189450 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.47920 -38.26058 -37.66839 -37.09612 -36.52312 -34.26065 -32.57440 -31.60373 -30.33341 -30.16893 -28.07138 -25.42898 -24.81980 -23.51647 -22.39821 -22.09457 -20.27191 -19.97951 -19.01073 -18.74265 -17.92432 -17.25248 -17.03574 -16.53341 -16.25939 -15.99824 -15.86508 -15.04510 -14.88846 -14.73299 -14.64767 -14.09064 -14.01029 -13.97114 -13.82248 -13.64919 -13.29531 -13.24791 -13.24090 -13.17484 -12.95769 -12.71300 -12.63117 -12.58238 -12.44655 -12.21150 -12.13887 -11.85845 -11.77142 -11.66302 -11.60826 -11.42985 -11.34609 -11.29364 -10.78328 -9.96048 -9.20147 -8.30691 -6.36785 -0.84208 1.36509 1.38941 1.50729 1.63028 2.35851 2.76732 2.87651 3.04290 3.06988 3.48037 3.65183 3.72179 3.90295 4.03771 4.19157 4.30849 4.31547 4.33130 4.39179 4.40368 4.52073 4.57152 4.57719 4.62284 4.71701 4.77849 4.82242 4.82936 4.89076 4.92973 4.99237 5.05494 5.11616 5.17810 5.20151 5.28167 5.31695 5.32267 5.41108 5.44896 5.51043 5.61291 6.17565 6.20080 6.24210 6.71224 7.27889 8.86290 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.015773 B = 0.003089 C = 0.002819 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1774.754096 B = 9061.947871 C = 9931.025192 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.048 3.952 3 N -0.534 5.534 4 C 0.036 3.964 5 C -0.143 4.143 6 C 0.076 3.924 7 H 0.067 0.933 8 C -0.112 4.112 9 C 0.111 3.889 10 N -1.011 6.011 11 S 2.635 3.365 12 O -0.985 6.985 13 O -0.989 6.989 14 C -0.607 4.607 15 C -0.104 4.104 16 C -0.004 4.004 17 C -0.545 4.545 18 H 0.030 0.970 19 C 0.001 3.999 20 N -0.952 5.952 21 Si 0.955 3.045 22 H -0.265 1.265 23 H -0.284 1.284 24 H -0.239 1.239 25 C 0.120 3.880 26 H 0.069 0.931 27 H 0.056 0.944 28 H 0.053 0.947 29 H 0.080 0.920 30 H 0.085 0.915 31 H 0.046 0.954 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.089 0.911 37 H 0.102 0.898 38 H 0.087 0.913 39 H 0.074 0.926 40 H 0.150 0.850 41 H 0.154 0.846 42 H 0.062 0.938 43 H 0.063 0.937 44 H 0.033 0.967 45 H 0.030 0.970 46 H 0.267 0.733 47 H 0.063 0.937 48 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.231 -23.049 -11.736 33.463 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.079 4.079 3 N -0.259 5.259 4 C -0.091 4.091 5 C -0.201 4.201 6 C -0.034 4.034 7 H 0.084 0.916 8 C -0.151 4.151 9 C -0.014 4.014 10 N -0.851 5.851 11 S 2.733 3.267 12 O -0.975 6.975 13 O -0.979 6.979 14 C -0.738 4.738 15 C -0.143 4.143 16 C -0.042 4.042 17 C -0.583 4.583 18 H 0.048 0.952 19 C -0.196 4.196 20 N -0.592 5.592 21 Si 0.778 3.222 22 H -0.190 1.190 23 H -0.210 1.210 24 H -0.162 1.162 25 C -0.006 4.006 26 H 0.088 0.912 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.099 0.901 30 H 0.103 0.897 31 H 0.064 0.936 32 H 0.087 0.913 33 H 0.078 0.922 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.108 0.892 37 H 0.121 0.879 38 H 0.106 0.894 39 H 0.092 0.908 40 H 0.169 0.831 41 H 0.172 0.828 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.051 0.949 45 H 0.048 0.952 46 H 0.076 0.924 47 H 0.082 0.918 48 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -21.020 -22.137 -11.367 32.574 hybrid contribution 0.357 0.049 -0.165 0.397 sum -20.662 -22.088 -11.532 32.370 Atomic orbital electron populations 1.22391 0.97813 1.02902 1.01791 1.22232 0.93186 0.88928 1.03582 1.62305 1.59639 1.02829 1.01100 1.22246 0.98261 0.98522 0.90093 1.21726 1.00374 1.01291 0.96667 1.22628 0.97756 0.91790 0.91252 0.91559 1.22856 1.03536 0.96499 0.92246 1.22251 1.01381 0.83645 0.94125 1.58414 1.75570 1.34420 1.16662 1.04101 0.77518 0.72380 0.72678 1.93531 1.81115 1.85820 1.37068 1.93520 1.82542 1.57602 1.64263 1.30528 1.22288 1.08341 1.12640 1.21192 0.97357 0.94865 1.00889 1.19494 0.91610 0.95866 0.97275 1.21549 0.92237 1.01439 1.43046 0.95179 1.26114 0.98768 0.99922 0.94752 1.70083 1.08088 1.32310 1.48745 0.85589 0.77802 0.79999 0.78859 1.18956 1.20995 1.16219 1.21851 1.00735 0.97064 0.80914 0.91192 0.92548 0.92798 0.90120 0.89708 0.93570 0.91287 0.92235 0.91772 0.92794 0.89205 0.87913 0.89439 0.90780 0.83143 0.82838 0.91966 0.91788 0.94917 0.95194 0.92390 0.91845 0.90396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.52 9.28 71.98 0.67 -0.85 16 2 C 0.05 0.44 5.72 86.30 0.49 0.93 16 3 N -0.53 -6.66 4.50 -864.00 -3.89 -10.55 16 4 C 0.04 0.45 5.40 86.30 0.47 0.91 16 5 C -0.14 -1.62 9.96 71.98 0.72 -0.90 16 6 C 0.08 1.00 2.16 46.11 0.10 1.10 16 7 H 0.07 0.82 6.42 -2.38 -0.02 0.81 16 8 C -0.11 -1.24 5.45 31.99 0.17 -1.07 16 9 C 0.11 1.75 6.89 86.85 0.60 2.34 16 10 N -1.01 -21.40 3.62 -506.40 -1.83 -23.24 16 11 S 2.64 76.50 5.65 -56.49 -0.32 76.18 16 12 O -0.98 -34.23 17.60 -127.65 -2.25 -36.48 16 13 O -0.99 -35.03 17.60 -127.65 -2.25 -37.28 16 14 C -0.61 -16.88 6.18 71.98 0.44 -16.44 16 15 C -0.10 -4.08 5.16 30.60 0.16 -3.92 16 16 C 0.00 -0.18 4.04 29.85 0.12 -0.06 16 17 C -0.54 -31.99 9.66 25.60 0.25 -31.74 16 18 H 0.03 1.95 7.99 -2.91 -0.02 1.93 16 19 C 0.00 0.07 5.47 84.65 0.46 0.53 16 20 N -0.95 -60.53 13.96 21.45 0.30 -60.23 16 21 Si 0.96 43.64 27.47 68.60 1.88 45.52 16 22 H -0.26 -11.55 7.11 99.48 0.71 -10.84 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 H -0.24 -9.83 6.54 99.48 0.65 -9.18 16 25 C 0.12 2.21 5.23 86.74 0.45 2.66 16 26 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.06 0.49 6.30 -2.39 -0.02 0.47 16 28 H 0.05 0.48 6.41 -2.39 -0.02 0.46 16 29 H 0.08 0.71 6.58 -2.39 -0.02 0.69 16 30 H 0.08 0.67 7.11 -2.39 -0.02 0.66 16 31 H 0.05 0.52 5.96 -2.38 -0.01 0.50 16 32 H 0.07 0.96 6.61 -2.39 -0.02 0.94 16 33 H 0.06 0.59 6.70 -2.39 -0.02 0.58 16 34 H 0.06 0.64 8.14 -2.39 -0.02 0.62 16 35 H 0.05 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.09 1.03 8.14 -2.39 -0.02 1.01 16 37 H 0.10 0.70 8.06 -2.39 -0.02 0.69 16 38 H 0.09 1.25 8.14 -2.38 -0.02 1.23 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.15 3.53 8.14 -2.39 -0.02 3.51 16 41 H 0.15 3.48 8.14 -2.39 -0.02 3.46 16 42 H 0.06 2.51 8.14 -2.38 -0.02 2.49 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.03 1.43 7.20 -2.39 -0.02 1.41 16 45 H 0.03 1.30 7.57 -2.39 -0.02 1.28 16 46 H 0.27 15.76 8.31 -92.71 -0.77 14.99 16 47 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 48 H 0.08 1.42 7.76 -2.39 -0.02 1.40 16 Total: -1.00 -77.15 380.28 -2.39 -79.54 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 0.86 Total: 13.02 kcal Atomic # 6 Polarization: -51.60 SS G_CDS: 5.10 Total: -46.49 kcal Atomic # 7 Polarization: -88.60 SS G_CDS: -5.42 Total: -94.02 kcal Atomic # 8 Polarization: -69.26 SS G_CDS: -4.49 Total: -73.76 kcal Atomic # 14 Polarization: 43.64 SS G_CDS: 1.88 Total: 45.52 kcal Atomic # 16 Polarization: 76.50 SS G_CDS: -0.32 Total: 76.18 kcal Total: -77.15 -2.39 -79.54 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000173988800.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.339 kcal (2) G-P(sol) polarization free energy of solvation -77.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.492 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.389 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.541 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds