Wall clock time and date at job start Tue Mar 31 2020 12:16:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46895 * 109.47177 * 2 1 4 4 C 1.46901 * 111.00054 * 66.05251 * 3 2 1 5 5 C 1.46902 * 110.99884 * 190.00427 * 3 2 1 6 6 C 1.53003 * 109.47310 * 75.61894 * 5 3 2 7 7 H 1.09000 * 110.88476 * 308.19703 * 6 5 3 8 8 C 1.55154 * 111.03371 * 72.10257 * 6 5 3 9 9 C 1.54333 * 103.01832 * 153.39910 * 8 6 5 10 10 N 1.47023 * 107.26499 * 338.13647 * 9 8 6 11 11 S 1.65597 * 125.64532 * 178.85391 * 10 9 8 12 12 O 1.42101 * 104.27775 * 153.62289 * 11 10 9 13 13 O 1.42096 * 104.28209 * 25.76199 * 11 10 9 14 14 C 1.81401 * 104.44868 * 269.69044 * 11 10 9 15 15 C 1.53002 * 109.47381 * 180.02562 * 14 11 10 16 16 C 1.53002 * 109.47106 * 180.02562 * 15 14 11 17 17 C 1.50696 * 109.46999 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00199 * 359.97438 * 17 16 15 19 19 C 1.37880 * 120.00368 * 180.02562 * 17 16 15 20 20 N 1.31513 * 119.99409 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00264 * 180.02562 * 19 17 16 22 22 H 1.48498 * 109.46844 * 179.97438 * 21 19 17 23 23 H 1.48496 * 109.46919 * 59.99731 * 21 19 17 24 24 H 1.48502 * 109.46863 * 299.99780 * 21 19 17 25 25 C 1.47424 * 108.70090 * 358.58869 * 10 9 8 26 26 H 1.08994 * 109.47349 * 59.99118 * 1 2 3 27 27 H 1.08999 * 109.47340 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.46565 * 299.99954 * 1 2 3 29 29 H 1.09006 * 109.46565 * 240.00046 * 2 1 3 30 30 H 1.08994 * 109.47349 * 120.00882 * 2 1 3 31 31 H 1.08995 * 109.47214 * 187.89392 * 4 3 2 32 32 H 1.09001 * 109.46956 * 307.89309 * 4 3 2 33 33 H 1.08993 * 109.47078 * 67.89111 * 4 3 2 34 34 H 1.09005 * 109.47213 * 315.61932 * 5 3 2 35 35 H 1.08999 * 109.47097 * 195.61980 * 5 3 2 36 36 H 1.09005 * 110.72437 * 271.95433 * 8 6 5 37 37 H 1.09002 * 110.72883 * 35.05106 * 8 6 5 38 38 H 1.09007 * 109.98688 * 218.66409 * 9 8 6 39 39 H 1.09000 * 109.78294 * 97.49940 * 9 8 6 40 40 H 1.09004 * 109.47346 * 60.00384 * 14 11 10 41 41 H 1.09005 * 109.47243 * 300.00456 * 14 11 10 42 42 H 1.09002 * 109.47028 * 60.00241 * 15 14 11 43 43 H 1.08997 * 109.46796 * 300.00294 * 15 14 11 44 44 H 1.08992 * 109.47236 * 60.00156 * 16 15 14 45 45 H 1.09002 * 109.46786 * 300.00074 * 16 15 14 46 46 H 0.96999 * 120.00075 * 359.97438 * 20 19 17 47 47 H 1.09004 * 110.36511 * 143.19650 * 25 10 9 48 48 H 1.08999 * 110.36316 * 265.51348 * 25 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6704 2.0668 1.2534 5 6 3.4685 1.4310 -0.2383 6 6 3.7504 1.1705 -1.7193 7 1 3.2535 0.2603 -2.0552 8 6 3.3317 2.3858 -2.5881 9 6 4.2586 2.2707 -3.8168 10 7 5.4196 1.4639 -3.4134 11 16 6.6847 1.0363 -4.3926 12 8 7.7730 0.8504 -3.4980 13 8 6.7180 2.0519 -5.3859 14 6 6.1799 -0.5476 -5.1186 15 6 7.2797 -1.0534 -6.0543 16 6 6.8536 -2.3890 -6.6671 17 6 7.9372 -2.8875 -7.5883 18 1 8.8393 -2.3092 -7.7235 19 6 7.7765 -4.0812 -8.2593 20 7 6.6777 -4.7850 -8.0950 21 14 9.1199 -4.6994 -9.4006 22 1 8.7063 -5.9956 -9.9954 23 1 10.3758 -4.8868 -8.6308 24 1 9.3456 -3.7073 -10.4823 25 6 5.2739 1.1040 -1.9912 26 1 -0.3634 0.5139 -0.8898 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.8933 -0.5139 -0.8901 30 1 1.8934 -0.5139 0.8898 31 1 1.9187 3.1251 1.1727 32 1 0.6022 1.9576 1.4409 33 1 2.2309 1.6238 2.0765 34 1 3.9604 0.6679 0.3650 35 1 3.8509 2.4140 0.0369 36 1 2.2852 2.3070 -2.8829 37 1 3.5117 3.3203 -2.0566 38 1 4.5868 3.2619 -4.1301 39 1 3.7300 1.7779 -4.6328 40 1 5.2571 -0.4113 -5.6824 41 1 6.0161 -1.2757 -4.3241 42 1 8.2024 -1.1899 -5.4902 43 1 7.4439 -0.3254 -6.8488 44 1 5.9312 -2.2521 -7.2313 45 1 6.6891 -3.1171 -5.8728 46 1 5.9806 -4.4645 -7.5015 47 1 5.6471 0.0950 -1.8151 48 1 5.8032 1.8201 -1.3626 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000174020477.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:24 Heat of formation + Delta-G solvation = -111.675089 kcal Electronic energy + Delta-G solvation = -25191.343151 eV Core-core repulsion = 21599.598876 eV Total energy + Delta-G solvation = -3591.744275 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.04629 -38.31287 -38.11260 -37.16292 -36.80938 -34.26696 -33.08134 -31.21822 -30.31860 -29.34379 -27.54574 -25.51715 -25.04968 -23.40092 -22.58639 -22.24893 -20.92954 -20.00205 -19.13908 -18.62905 -17.71523 -17.27981 -16.87119 -16.36514 -16.15243 -15.93755 -15.67749 -15.37838 -15.34476 -14.69160 -14.61124 -14.48853 -14.00931 -13.93858 -13.71346 -13.67379 -13.34084 -13.27873 -13.23229 -13.14707 -12.81982 -12.69364 -12.62353 -12.58305 -12.46351 -12.18743 -12.01547 -11.95740 -11.91050 -11.75387 -11.70645 -11.54562 -11.30918 -10.73942 -10.58389 -9.97410 -9.23360 -8.73600 -6.44726 -0.89783 1.51510 1.59590 1.59974 1.79343 2.53681 2.70325 2.87157 3.05301 3.11300 3.50054 3.66414 3.68841 3.84750 3.92114 4.13889 4.20118 4.29075 4.33145 4.38697 4.45459 4.48940 4.53376 4.57588 4.66179 4.68636 4.75117 4.76812 4.82518 4.84041 4.94817 4.96708 5.05320 5.07429 5.10094 5.17638 5.20100 5.22543 5.33116 5.39373 5.41338 5.45685 5.92524 6.13217 6.14923 6.17353 6.52602 7.36496 8.67893 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016999 B = 0.002646 C = 0.002395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1646.806786 B =10580.370989 C =11689.860487 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.044 3.956 3 N -0.547 5.547 4 C 0.022 3.978 5 C 0.066 3.934 6 C -0.088 4.088 7 H 0.087 0.913 8 C -0.099 4.099 9 C 0.106 3.894 10 N -1.013 6.013 11 S 2.643 3.357 12 O -0.984 6.984 13 O -0.985 6.985 14 C -0.610 4.610 15 C -0.100 4.100 16 C 0.015 3.985 17 C -0.630 4.630 18 H 0.052 0.948 19 C -0.037 4.037 20 N -0.935 5.935 21 Si 1.116 2.884 22 H -0.281 1.281 23 H -0.269 1.269 24 H -0.269 1.269 25 C 0.116 3.884 26 H 0.057 0.943 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.041 0.959 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.066 0.934 43 H 0.065 0.935 44 H 0.000 1.000 45 H 0.000 1.000 46 H 0.257 0.743 47 H 0.078 0.922 48 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.135 14.875 19.969 28.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.083 4.083 3 N -0.271 5.271 4 C -0.126 4.126 5 C -0.062 4.062 6 C -0.108 4.108 7 H 0.105 0.895 8 C -0.138 4.138 9 C -0.019 4.019 10 N -0.852 5.852 11 S 2.740 3.260 12 O -0.975 6.975 13 O -0.975 6.975 14 C -0.741 4.741 15 C -0.139 4.139 16 C -0.023 4.023 17 C -0.668 4.668 18 H 0.070 0.930 19 C -0.235 4.235 20 N -0.572 5.572 21 Si 0.937 3.063 22 H -0.206 1.206 23 H -0.194 1.194 24 H -0.194 1.194 25 C -0.009 4.009 26 H 0.077 0.923 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.049 0.951 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.060 0.940 35 H 0.103 0.897 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.086 0.914 39 H 0.091 0.909 40 H 0.161 0.839 41 H 0.161 0.839 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.018 0.982 45 H 0.018 0.982 46 H 0.067 0.933 47 H 0.097 0.903 48 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -12.099 14.416 18.417 26.332 hybrid contribution -0.499 0.084 1.493 1.577 sum -12.598 14.499 19.910 27.665 Atomic orbital electron populations 1.21776 0.94323 1.01900 1.02333 1.22178 0.96603 0.88831 1.00716 1.61968 1.13556 1.16151 1.35434 1.22457 1.01724 0.99291 0.89146 1.22020 0.87852 1.02045 0.94285 1.22328 0.93115 0.99818 0.95564 0.89493 1.22511 0.99250 0.98343 0.93681 1.22028 0.85562 0.95055 0.99210 1.58453 1.38968 1.66355 1.21416 1.03878 0.72845 0.76227 0.73021 1.93525 1.52051 1.87619 1.64257 1.93520 1.86355 1.55686 1.61958 1.30573 1.09799 1.22050 1.11665 1.21190 0.96113 0.99147 0.97435 1.19124 0.95939 0.92443 0.94772 1.22560 1.05294 1.09255 1.29644 0.93012 1.27452 1.02106 0.94214 0.99688 1.70921 1.07892 1.40745 1.37672 0.82951 0.72511 0.76173 0.74674 1.20603 1.19386 1.19385 1.22197 0.97591 1.01187 0.79909 0.92343 0.91919 0.92276 0.90914 0.95060 0.90828 0.90639 0.95709 0.94025 0.89675 0.88853 0.89985 0.91394 0.90882 0.83894 0.83873 0.91564 0.91611 0.98206 0.98185 0.93326 0.90329 0.90560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 9.85 71.98 0.71 -0.82 16 2 C 0.04 0.53 5.51 86.31 0.48 1.00 16 3 N -0.55 -6.47 4.63 -922.46 -4.27 -10.74 16 4 C 0.02 0.21 9.36 127.69 1.20 1.40 16 5 C 0.07 0.77 4.45 86.30 0.38 1.16 16 6 C -0.09 -1.19 3.09 -9.40 -0.03 -1.22 16 7 H 0.09 1.22 6.69 -2.39 -0.02 1.21 16 8 C -0.10 -1.31 6.36 31.78 0.20 -1.11 16 9 C 0.11 1.94 6.90 86.73 0.60 2.54 16 10 N -1.01 -22.62 3.62 -506.41 -1.83 -24.46 16 11 S 2.64 79.74 5.65 -56.49 -0.32 79.42 16 12 O -0.98 -35.02 17.61 -127.65 -2.25 -37.26 16 13 O -0.98 -35.39 17.60 -127.65 -2.25 -37.64 16 14 C -0.61 -18.94 6.18 71.98 0.44 -18.49 16 15 C -0.10 -4.17 5.16 30.60 0.16 -4.02 16 16 C 0.02 0.80 4.28 29.85 0.13 0.93 16 17 C -0.63 -36.67 9.11 25.60 0.23 -36.43 16 18 H 0.05 2.94 7.74 -2.91 -0.02 2.91 16 19 C -0.04 -2.16 5.46 84.66 0.46 -1.70 16 20 N -0.94 -58.06 13.65 21.45 0.29 -57.77 16 21 Si 1.12 50.72 29.90 68.60 2.05 52.77 16 22 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 23 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 24 H -0.27 -11.35 7.11 99.48 0.71 -10.65 16 25 C 0.12 2.07 6.36 86.85 0.55 2.63 16 26 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.55 6.40 -2.38 -0.02 0.54 16 29 H 0.07 0.93 6.58 -2.38 -0.02 0.91 16 30 H 0.03 0.38 8.12 -2.39 -0.02 0.36 16 31 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 32 H 0.07 0.65 6.15 -2.39 -0.01 0.63 16 33 H 0.02 0.23 8.14 -2.39 -0.02 0.21 16 34 H 0.04 0.49 8.00 -2.38 -0.02 0.47 16 35 H 0.08 0.88 7.78 -2.39 -0.02 0.86 16 36 H 0.09 1.12 8.14 -2.38 -0.02 1.10 16 37 H 0.08 0.98 7.93 -2.39 -0.02 0.96 16 38 H 0.07 1.30 8.14 -2.38 -0.02 1.28 16 39 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 40 H 0.14 3.93 8.14 -2.39 -0.02 3.91 16 41 H 0.14 3.90 8.14 -2.39 -0.02 3.88 16 42 H 0.07 2.74 8.14 -2.39 -0.02 2.72 16 43 H 0.07 2.73 8.14 -2.39 -0.02 2.71 16 44 H 0.00 -0.02 8.01 -2.39 -0.02 -0.04 16 45 H 0.00 -0.01 8.01 -2.39 -0.02 -0.03 16 46 H 0.26 15.98 7.22 -92.71 -0.67 15.31 16 47 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 48 H 0.08 1.28 8.04 -2.39 -0.02 1.26 16 Total: -1.00 -75.40 390.41 -2.06 -77.46 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: 1.00 Total: 12.35 kcal Atomic # 6 Polarization: -59.65 SS G_CDS: 5.51 Total: -54.14 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -5.81 Total: -92.96 kcal Atomic # 8 Polarization: -70.41 SS G_CDS: -4.49 Total: -74.90 kcal Atomic # 14 Polarization: 50.72 SS G_CDS: 2.05 Total: 52.77 kcal Atomic # 16 Polarization: 79.74 SS G_CDS: -0.32 Total: 79.42 kcal Total: -75.40 -2.06 -77.46 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000174020477.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.213 kcal (2) G-P(sol) polarization free energy of solvation -75.402 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.615 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds