Wall clock time and date at job start Tue Mar 31 2020 12:26:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46892 * 111.00243 * 2 1 4 4 C 1.46906 * 110.99716 * 123.94795 * 2 1 3 5 5 H 1.09000 * 109.46927 * 55.00247 * 4 2 1 6 6 C 1.53001 * 109.47370 * 294.99991 * 4 2 1 7 7 C 1.52995 * 109.46940 * 179.97438 * 6 4 2 8 8 C 1.52997 * 109.47138 * 60.00364 * 7 6 4 9 9 C 1.53000 * 109.47162 * 299.99367 * 8 7 6 10 10 H 1.09000 * 109.47412 * 300.00267 * 9 8 7 11 11 N 1.46500 * 109.47415 * 180.02562 * 9 8 7 12 12 S 1.65600 * 119.99994 * 95.00476 * 11 9 8 13 13 O 1.42104 * 104.27408 * 308.92551 * 12 11 9 14 14 O 1.42098 * 104.27722 * 181.07392 * 12 11 9 15 15 C 1.81394 * 104.45148 * 64.99714 * 12 11 9 16 16 C 1.52997 * 109.47383 * 179.97438 * 15 12 11 17 17 C 1.53002 * 109.47535 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.46997 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00319 * 0.02562 * 18 17 16 20 20 C 1.37885 * 119.99717 * 180.02562 * 18 17 16 21 21 N 1.31516 * 119.99913 * 180.02562 * 20 18 17 22 22 Si 1.86798 * 119.99766 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.52996 * 109.47045 * 174.99752 * 4 2 1 27 27 H 1.09010 * 109.47230 * 296.05166 * 1 2 3 28 28 H 1.09004 * 109.47001 * 56.04601 * 1 2 3 29 29 H 1.08995 * 109.47744 * 176.05330 * 1 2 3 30 30 H 1.09003 * 109.47678 * 183.95532 * 3 2 1 31 31 H 1.09003 * 109.47129 * 303.95211 * 3 2 1 32 32 H 1.09002 * 109.47687 * 63.94977 * 3 2 1 33 33 H 1.08992 * 109.47027 * 300.00077 * 6 4 2 34 34 H 1.09002 * 109.47014 * 60.00160 * 6 4 2 35 35 H 1.08999 * 109.46945 * 179.97438 * 7 6 4 36 36 H 1.09005 * 109.47349 * 299.99721 * 7 6 4 37 37 H 1.09000 * 109.46988 * 180.02562 * 8 7 6 38 38 H 1.08992 * 109.47271 * 59.99499 * 8 7 6 39 39 H 0.96995 * 119.99943 * 275.00326 * 11 9 8 40 40 H 1.09005 * 109.46957 * 60.00082 * 15 12 11 41 41 H 1.09004 * 109.47580 * 300.00235 * 15 12 11 42 42 H 1.09005 * 109.46889 * 60.00185 * 16 15 12 43 43 H 1.09002 * 109.47401 * 300.00274 * 16 15 12 44 44 H 1.09005 * 109.46767 * 60.00250 * 17 16 15 45 45 H 1.09002 * 109.47113 * 300.00590 * 17 16 15 46 46 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 47 47 H 1.09005 * 109.47205 * 60.00134 * 26 4 2 48 48 H 1.08999 * 109.47142 * 300.00275 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3713 0.0000 4 6 1.9954 -0.7659 1.1377 5 1 1.5753 -1.7716 1.1242 6 6 1.6090 -0.0693 2.4440 7 6 2.1567 -0.8674 3.6289 8 6 3.6810 -0.9505 3.5268 9 6 4.0674 -1.6472 2.2205 10 1 3.6470 -2.6527 2.2068 11 7 5.5270 -1.7273 2.1230 12 16 6.3165 -3.0941 2.6240 13 8 5.8147 -3.3288 3.9326 14 8 7.6906 -2.8043 2.4074 15 6 5.7511 -4.3870 1.4842 16 6 6.4186 -5.7148 1.8475 17 6 5.9413 -6.8055 0.8865 18 6 6.5993 -8.1132 1.2440 19 1 7.2887 -8.1617 2.0740 20 6 6.3213 -9.2478 0.5115 21 7 6.8952 -10.3892 0.8239 22 14 5.1295 -9.1637 -0.9244 23 1 3.7524 -9.4388 -0.4415 24 1 5.1800 -7.8092 -1.5310 25 1 5.5087 -10.1764 -1.9423 26 6 3.5197 -0.8486 1.0353 27 1 -0.3634 0.4514 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0251 -0.0707 30 1 3.0828 1.3432 -0.0709 31 1 1.5898 1.9163 -0.8525 32 1 1.7044 1.8724 0.9232 33 1 2.0291 0.9363 2.4575 34 1 0.5230 -0.0105 2.5170 35 1 1.8818 -0.3709 4.5595 36 1 1.7362 -1.8730 3.6152 37 1 4.0712 -1.5195 4.3707 38 1 4.1014 0.0549 3.5405 39 1 6.0309 -0.9799 1.7650 40 1 6.0185 -4.1137 0.4634 41 1 4.6688 -4.4911 1.5607 42 1 6.1516 -5.9883 2.8683 43 1 7.5009 -5.6105 1.7706 44 1 6.2080 -6.5322 -0.1345 45 1 4.8590 -6.9097 0.9638 46 1 6.6992 -11.1874 0.3088 47 1 3.9398 0.1571 1.0488 48 1 3.7949 -1.3448 0.1047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175079289.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:32 Heat of formation + Delta-G solvation = -117.637049 kcal Electronic energy + Delta-G solvation = -25730.381535 eV Core-core repulsion = 22138.378730 eV Total energy + Delta-G solvation = -3592.002805 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.63042 -38.20451 -37.40418 -37.00457 -36.50280 -34.46287 -34.24724 -31.02450 -30.15730 -29.47833 -28.41299 -25.40120 -25.18720 -23.41345 -22.27985 -22.02566 -20.75187 -20.04096 -18.96595 -18.51584 -17.79143 -17.19823 -16.77849 -16.21740 -16.12816 -16.06273 -15.56890 -15.40051 -15.25219 -15.21497 -14.86610 -14.37610 -14.09213 -13.78365 -13.65200 -13.53187 -13.22442 -13.19941 -13.12773 -13.07548 -12.82538 -12.71310 -12.61711 -12.54580 -12.52138 -12.18137 -11.93942 -11.83947 -11.68816 -11.64089 -11.41488 -11.40525 -11.33422 -11.16180 -10.77285 -10.33995 -9.13220 -8.29835 -6.35777 -0.72970 1.37231 1.39925 1.51566 1.77635 2.36717 2.75744 3.05332 3.05411 3.24815 3.65756 3.70836 3.83885 3.90186 3.97139 4.09335 4.17994 4.30119 4.34386 4.40894 4.43576 4.52417 4.54469 4.61412 4.64640 4.67267 4.73291 4.83617 4.85920 4.95938 4.96519 5.06941 5.10279 5.17416 5.20499 5.23404 5.34385 5.35087 5.41172 5.46308 5.51065 5.62846 6.12680 6.16693 6.18590 6.25454 6.72606 7.28948 8.87250 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013319 B = 0.003328 C = 0.002869 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2101.816298 B = 8411.504164 C = 9758.057882 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.552 5.552 3 C 0.015 3.985 4 C 0.083 3.917 5 H 0.084 0.916 6 C -0.148 4.148 7 C -0.112 4.112 8 C -0.140 4.140 9 C 0.149 3.851 10 H 0.090 0.910 11 N -1.102 6.102 12 S 2.622 3.378 13 O -0.988 6.988 14 O -0.996 6.996 15 C -0.612 4.612 16 C -0.104 4.104 17 C -0.005 4.005 18 C -0.544 4.544 19 H 0.029 0.971 20 C 0.001 3.999 21 N -0.953 5.953 22 Si 0.955 3.045 23 H -0.263 1.263 24 H -0.239 1.239 25 H -0.286 1.286 26 C -0.112 4.112 27 H 0.034 0.966 28 H 0.071 0.929 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.069 0.931 34 H 0.068 0.932 35 H 0.071 0.929 36 H 0.066 0.934 37 H 0.060 0.940 38 H 0.073 0.927 39 H 0.426 0.574 40 H 0.155 0.845 41 H 0.154 0.846 42 H 0.063 0.937 43 H 0.061 0.939 44 H 0.032 0.968 45 H 0.032 0.968 46 H 0.267 0.733 47 H 0.081 0.919 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.431 28.299 -1.668 32.276 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.275 5.275 3 C -0.133 4.133 4 C -0.026 4.026 5 H 0.102 0.898 6 C -0.186 4.186 7 C -0.151 4.151 8 C -0.179 4.179 9 C 0.041 3.959 10 H 0.108 0.892 11 N -0.862 5.862 12 S 2.718 3.282 13 O -0.977 6.977 14 O -0.987 6.987 15 C -0.743 4.743 16 C -0.143 4.143 17 C -0.043 4.043 18 C -0.583 4.583 19 H 0.048 0.952 20 C -0.196 4.196 21 N -0.593 5.593 22 Si 0.777 3.223 23 H -0.188 1.188 24 H -0.162 1.162 25 H -0.211 1.211 26 C -0.152 4.152 27 H 0.052 0.948 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.052 0.948 33 H 0.088 0.912 34 H 0.087 0.913 35 H 0.090 0.910 36 H 0.085 0.915 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.262 0.738 40 H 0.173 0.827 41 H 0.172 0.828 42 H 0.082 0.918 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.050 0.950 46 H 0.076 0.924 47 H 0.099 0.901 48 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -14.737 27.730 -1.348 31.432 hybrid contribution -0.403 -0.224 -0.153 0.485 sum -15.140 27.506 -1.501 31.434 Atomic orbital electron populations 1.22436 0.86822 1.02532 1.00990 1.62221 1.08541 1.14581 1.42134 1.22515 1.01287 0.88612 1.00882 1.21722 0.94692 0.98063 0.88104 0.89796 1.22193 1.01146 1.00122 0.95179 1.21421 0.94161 1.00973 0.98504 1.22094 0.96845 1.01652 0.97301 1.20932 0.78031 1.01024 0.95879 0.89225 1.55388 1.15843 1.32620 1.82389 1.04401 0.73044 0.75273 0.75481 1.93544 1.81217 1.85897 1.37081 1.93538 1.34234 1.83735 1.87157 1.30529 1.13277 1.12338 1.18158 1.21175 0.99799 0.92497 1.00824 1.19503 0.96745 0.92201 0.95886 1.21569 1.26701 0.94453 1.15527 0.95225 1.26121 0.98068 0.94586 1.00827 1.70087 1.45758 1.00932 1.42561 0.85594 0.78871 0.79467 0.78345 1.18831 1.16175 1.21142 1.21869 0.94423 1.01392 0.97470 0.94796 0.90985 0.91397 0.90830 0.91240 0.94777 0.91206 0.91304 0.91032 0.91530 0.92100 0.90791 0.73796 0.82679 0.82832 0.91825 0.92012 0.95012 0.95005 0.92424 0.90057 0.89992 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.31 127.69 1.19 1.40 16 2 N -0.55 -6.90 5.01 -923.27 -4.62 -11.52 16 3 C 0.01 0.15 8.82 127.69 1.13 1.28 16 4 C 0.08 1.01 2.23 44.91 0.10 1.11 16 5 H 0.08 1.08 8.13 -2.39 -0.02 1.06 16 6 C -0.15 -1.60 4.51 30.59 0.14 -1.46 16 7 C -0.11 -1.43 5.92 30.59 0.18 -1.25 16 8 C -0.14 -2.22 5.53 30.59 0.17 -2.05 16 9 C 0.15 2.26 2.56 45.01 0.12 2.38 16 10 H 0.09 1.30 7.15 -2.39 -0.02 1.28 16 11 N -1.10 -19.13 5.36 -169.31 -0.91 -20.04 16 12 S 2.62 69.45 5.38 -56.49 -0.30 69.15 16 13 O -0.99 -32.31 17.11 -127.65 -2.18 -34.50 16 14 O -1.00 -33.34 18.08 -127.65 -2.31 -35.64 16 15 C -0.61 -15.84 5.96 71.98 0.43 -15.41 16 16 C -0.10 -3.96 5.16 30.59 0.16 -3.80 16 17 C 0.00 -0.22 4.04 29.85 0.12 -0.10 16 18 C -0.54 -31.68 9.66 25.60 0.25 -31.43 16 19 H 0.03 1.91 7.99 -2.91 -0.02 1.89 16 20 C 0.00 0.04 5.47 84.66 0.46 0.50 16 21 N -0.95 -60.39 13.96 21.45 0.30 -60.09 16 22 Si 0.95 43.26 27.47 68.60 1.88 45.14 16 23 H -0.26 -11.34 7.11 99.48 0.71 -10.64 16 24 H -0.24 -9.71 6.54 99.48 0.65 -9.06 16 25 H -0.29 -12.80 7.11 99.48 0.71 -12.09 16 26 C -0.11 -1.35 4.53 30.61 0.14 -1.21 16 27 H 0.03 0.32 6.44 -2.38 -0.02 0.30 16 28 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 30 H 0.07 0.71 6.33 -2.39 -0.02 0.69 16 31 H 0.07 0.64 8.12 -2.39 -0.02 0.62 16 32 H 0.03 0.32 6.28 -2.39 -0.01 0.30 16 33 H 0.07 0.73 6.38 -2.39 -0.02 0.72 16 34 H 0.07 0.71 6.52 -2.39 -0.02 0.69 16 35 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 36 H 0.07 0.87 8.14 -2.38 -0.02 0.85 16 37 H 0.06 1.27 7.42 -2.39 -0.02 1.25 16 38 H 0.07 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.43 5.72 8.80 -96.75 -0.85 4.86 16 40 H 0.16 3.27 8.14 -2.39 -0.02 3.25 16 41 H 0.15 3.14 7.44 -2.39 -0.02 3.12 16 42 H 0.06 2.48 8.14 -2.38 -0.02 2.46 16 43 H 0.06 2.43 8.14 -2.39 -0.02 2.41 16 44 H 0.03 1.36 7.20 -2.38 -0.02 1.35 16 45 H 0.03 1.34 7.57 -2.39 -0.02 1.32 16 46 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 47 H 0.08 0.84 6.42 -2.38 -0.02 0.83 16 48 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 Total: -1.00 -77.40 376.57 -3.54 -80.94 By element: Atomic # 1 Polarization: 16.58 SS G_CDS: 0.03 Total: 16.61 kcal Atomic # 6 Polarization: -54.62 SS G_CDS: 4.57 Total: -50.05 kcal Atomic # 7 Polarization: -86.42 SS G_CDS: -5.23 Total: -91.65 kcal Atomic # 8 Polarization: -65.65 SS G_CDS: -4.49 Total: -70.14 kcal Atomic # 14 Polarization: 43.26 SS G_CDS: 1.88 Total: 45.14 kcal Atomic # 16 Polarization: 69.45 SS G_CDS: -0.30 Total: 69.15 kcal Total: -77.40 -3.54 -80.94 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175079289.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.696 kcal (2) G-P(sol) polarization free energy of solvation -77.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.941 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds