Wall clock time and date at job start Tue Mar 31 2020 12:26:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99737 * 2 1 4 4 C 1.46894 * 110.99995 * 123.95751 * 2 1 3 5 5 H 1.09002 * 109.47104 * 299.99727 * 4 2 1 6 6 C 1.52997 * 109.47515 * 59.99995 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47294 * 60.00190 * 9 8 7 12 12 S 1.65601 * 120.00134 * 94.99688 * 11 9 8 13 13 O 1.42098 * 104.27695 * 181.07223 * 12 11 9 14 14 O 1.42100 * 104.27646 * 308.92901 * 12 11 9 15 15 C 1.81400 * 104.45019 * 65.00335 * 12 11 9 16 16 C 1.52998 * 109.47492 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.47323 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47033 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.37887 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47057 * 60.00321 * 22 20 18 24 24 H 1.48502 * 109.46862 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47256 * 300.00635 * 22 20 18 26 26 C 1.52999 * 109.46927 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.47281 * 296.04317 * 1 2 3 28 28 H 1.08998 * 109.47274 * 56.04226 * 1 2 3 29 29 H 1.09001 * 109.46887 * 176.04593 * 1 2 3 30 30 H 1.09003 * 109.46649 * 183.95663 * 3 2 1 31 31 H 1.08997 * 109.47179 * 303.95694 * 3 2 1 32 32 H 1.09001 * 109.46814 * 63.95866 * 3 2 1 33 33 H 1.09002 * 109.47153 * 59.99762 * 6 4 2 34 34 H 1.09001 * 109.46832 * 299.99953 * 6 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 36 36 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 37 37 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 39 39 H 0.97006 * 119.99718 * 274.99830 * 11 9 8 40 40 H 1.09006 * 109.46869 * 300.00418 * 15 12 11 41 41 H 1.08999 * 109.46761 * 59.99754 * 15 12 11 42 42 H 1.08997 * 109.46893 * 300.00312 * 16 15 12 43 43 H 1.09006 * 109.46829 * 59.99620 * 16 15 12 44 44 H 1.08996 * 109.47196 * 300.00493 * 17 16 15 45 45 H 1.08997 * 109.47109 * 60.00230 * 17 16 15 46 46 H 0.97007 * 119.99784 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.47486 * 59.99528 * 26 4 2 48 48 H 1.09002 * 109.46716 * 299.99610 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.6460 -0.3201 2.0687 6 6 1.5049 -2.2125 1.0491 7 6 2.0528 -3.0101 2.2343 8 6 3.5823 -2.9874 2.2010 9 6 4.0728 -1.5409 2.2894 10 1 5.1624 -1.5246 2.2652 11 7 3.6026 -0.9414 3.5406 12 16 4.5814 -0.9384 4.8764 13 8 3.7986 -0.3113 5.8830 14 8 4.9980 -2.2905 5.0086 15 6 5.9813 0.1164 4.4095 16 6 6.9682 0.2001 5.5756 17 6 8.1493 1.0892 5.1815 18 6 9.1216 1.1711 6.3299 19 1 8.9178 0.6416 7.2488 20 6 10.2715 1.9221 6.2075 21 7 10.5193 2.5673 5.0887 22 14 11.4763 2.0242 7.6313 23 1 11.9703 0.6629 7.9603 24 1 12.6227 2.8871 7.2487 25 1 10.7942 2.6030 8.8165 26 6 3.5249 -0.7427 1.1040 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9234 33 1 1.8544 -2.6584 0.1179 34 1 0.4153 -2.2288 1.0732 35 1 1.7030 -2.5641 3.1652 36 1 1.7036 -4.0408 2.1710 37 1 3.9726 -3.5560 3.0450 38 1 3.9321 -3.4334 1.2699 39 1 2.7179 -0.5462 3.5867 40 1 6.4818 -0.3083 3.5392 41 1 5.6187 1.1157 4.1684 42 1 6.4675 0.6250 6.4455 43 1 7.3308 -0.7991 5.8171 44 1 8.6498 0.6640 4.3117 45 1 7.7870 2.0884 4.9397 46 1 11.3281 3.0960 5.0027 47 1 3.8741 0.2880 1.1671 48 1 3.8747 -1.1883 0.1727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175079306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:35 Heat of formation + Delta-G solvation = -92.435782 kcal Electronic energy + Delta-G solvation = -25863.838124 eV Core-core repulsion = 22272.928128 eV Total energy + Delta-G solvation = -3590.909996 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98171 -36.99528 -36.59075 -35.72196 -34.68326 -33.36600 -32.19726 -30.37867 -29.45292 -27.82848 -27.64755 -24.42643 -23.74579 -22.62559 -21.28468 -20.77834 -20.04082 -18.83598 -17.68603 -16.68469 -16.37215 -16.24732 -15.70678 -15.46715 -15.16650 -14.75924 -14.63434 -14.49592 -14.29251 -14.06063 -13.59209 -12.98316 -12.77496 -12.72170 -12.56860 -12.40572 -12.28302 -11.94956 -11.90060 -11.78962 -11.76262 -11.72071 -11.63848 -11.44712 -11.23362 -10.90502 -10.88497 -10.87395 -10.66738 -10.40125 -10.34436 -9.95805 -9.66273 -9.32974 -9.09440 -8.66584 -8.41346 -6.06528 -4.09634 0.47478 2.85422 3.31589 3.35442 3.38687 3.54599 3.94628 4.29936 4.41318 4.41981 4.48799 4.62505 4.82938 4.86089 4.97160 5.03378 5.05456 5.10347 5.16593 5.17403 5.21649 5.28185 5.29839 5.30539 5.36562 5.42263 5.55192 5.65234 5.68306 5.79333 5.84891 5.87133 5.94171 6.00492 6.14043 6.19793 6.25554 6.43678 6.70572 6.74411 6.85648 6.90940 7.55586 7.65712 7.91348 8.31944 8.96370 9.55057 11.04667 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002870 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.198392 B = 9754.559915 C =10489.522176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.542 5.542 3 C 0.017 3.983 4 C 0.084 3.916 5 H 0.042 0.958 6 C -0.113 4.113 7 C -0.116 4.116 8 C -0.139 4.139 9 C 0.156 3.844 10 H 0.089 0.911 11 N -1.119 6.119 12 S 2.598 3.402 13 O -0.966 6.966 14 O -0.959 6.959 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.031 3.969 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.895 5.895 22 Si 0.895 3.105 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.122 4.122 27 H 0.024 0.976 28 H 0.066 0.934 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.061 0.939 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.411 0.589 40 H 0.126 0.874 41 H 0.128 0.872 42 H 0.065 0.935 43 H 0.066 0.934 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.262 0.738 47 H 0.074 0.926 48 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.102 -7.363 -12.724 24.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.266 5.266 3 C -0.131 4.131 4 C -0.025 4.025 5 H 0.060 0.940 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.178 4.178 9 C 0.048 3.952 10 H 0.107 0.893 11 N -0.877 5.877 12 S 2.694 3.306 13 O -0.956 6.956 14 O -0.949 6.949 15 C -0.741 4.741 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.566 4.566 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.534 5.534 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.212 1.212 25 H -0.201 1.201 26 C -0.161 4.161 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.085 0.915 32 H 0.045 0.955 33 H 0.091 0.909 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.084 0.916 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.246 0.754 40 H 0.144 0.856 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.039 0.961 45 H 0.038 0.962 46 H 0.072 0.928 47 H 0.093 0.907 48 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -19.839 -8.029 -12.456 24.763 hybrid contribution 0.341 1.254 0.911 1.587 sum -19.498 -6.775 -11.545 23.651 Atomic orbital electron populations 1.22436 0.87552 1.02356 1.00422 1.62037 1.07732 1.13813 1.43044 1.22481 1.01458 0.88607 1.00528 1.21656 0.95022 0.94376 0.91401 0.94043 1.21655 1.00118 0.93967 0.99359 1.21465 0.95681 1.00071 0.98228 1.22072 0.96138 0.96197 1.03406 1.20763 0.98504 0.92722 0.83241 0.89278 1.55881 1.29934 1.74569 1.27331 1.05367 0.76030 0.75975 0.73214 1.93573 1.67754 1.78572 1.55750 1.93569 1.83435 1.32974 1.84930 1.30558 1.17363 1.15589 1.10639 1.21495 0.96902 1.02788 0.93327 1.19048 0.90535 0.94027 0.97076 1.21221 1.05125 1.30031 1.00196 0.92428 1.25017 0.98030 0.95368 0.95919 1.69945 1.26516 1.31501 1.25480 0.86614 0.80479 0.78126 0.82568 1.20101 1.21234 1.20117 1.21975 0.94520 1.01161 0.98453 0.95702 0.91492 0.91031 0.90634 0.91462 0.95521 0.90900 0.92010 0.91874 0.91625 0.89902 0.90807 0.75392 0.85565 0.85374 0.91641 0.91561 0.96132 0.96167 0.92832 0.90705 0.89514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.21 60.07 0.55 0.69 16 2 N -0.54 -4.35 4.89 -243.18 -1.19 -5.54 16 3 C 0.02 0.13 9.11 60.07 0.55 0.68 16 4 C 0.08 0.67 1.76 -67.72 -0.12 0.55 16 5 H 0.04 0.35 6.50 -51.93 -0.34 0.01 16 6 C -0.11 -0.84 4.97 -26.73 -0.13 -0.98 16 7 C -0.12 -0.95 5.77 -26.73 -0.15 -1.11 16 8 C -0.14 -1.26 5.64 -26.73 -0.15 -1.41 16 9 C 0.16 1.43 2.88 -67.91 -0.20 1.23 16 10 H 0.09 0.77 7.15 -51.93 -0.37 0.40 16 11 N -1.12 -11.66 4.63 -4.87 -0.02 -11.69 16 12 S 2.60 37.25 5.38 -107.50 -0.58 36.67 16 13 O -0.97 -16.90 18.08 -57.54 -1.04 -17.94 16 14 O -0.96 -16.23 17.11 -57.54 -0.98 -17.21 16 15 C -0.61 -9.18 5.96 37.16 0.22 -8.96 16 16 C -0.11 -2.13 5.16 -26.73 -0.14 -2.27 16 17 C 0.03 0.79 4.97 -27.89 -0.14 0.65 16 18 C -0.53 -14.85 9.11 -34.44 -0.31 -15.16 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 21 N -0.90 -26.52 13.29 55.43 0.74 -25.79 16 22 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.12 -0.97 4.56 -26.70 -0.12 -1.09 16 27 H 0.02 0.17 8.14 -51.93 -0.42 -0.25 16 28 H 0.07 0.41 8.12 -51.93 -0.42 -0.01 16 29 H 0.07 0.45 6.30 -51.93 -0.33 0.12 16 30 H 0.07 0.56 6.23 -51.93 -0.32 0.24 16 31 H 0.07 0.45 8.12 -51.93 -0.42 0.03 16 32 H 0.03 0.20 8.14 -51.93 -0.42 -0.22 16 33 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.06 0.43 6.40 -51.93 -0.33 0.10 16 35 H 0.06 0.56 7.44 -51.93 -0.39 0.18 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.08 0.91 7.43 -51.93 -0.39 0.53 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 39 H 0.41 3.78 6.78 -34.48 -0.23 3.55 16 40 H 0.13 1.66 7.44 -51.92 -0.39 1.27 16 41 H 0.13 1.74 8.14 -51.92 -0.42 1.31 16 42 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 43 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 45 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 47 H 0.07 0.59 6.35 -51.93 -0.33 0.26 16 48 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 LS Contribution 378.66 15.07 5.71 5.71 Total: -1.00 -34.23 378.66 -11.08 -45.31 By element: Atomic # 1 Polarization: 8.00 SS G_CDS: -8.45 Total: -0.45 kcal Atomic # 6 Polarization: -25.37 SS G_CDS: -0.24 Total: -25.61 kcal Atomic # 7 Polarization: -42.54 SS G_CDS: -0.47 Total: -43.01 kcal Atomic # 8 Polarization: -33.13 SS G_CDS: -2.02 Total: -35.15 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 37.25 SS G_CDS: -0.58 Total: 36.67 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -34.23 -11.08 -45.31 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175079306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.129 kcal (2) G-P(sol) polarization free energy of solvation -34.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.082 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.307 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.436 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds