Wall clock time and date at job start Tue Mar 31 2020 12:26:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46904 * 110.99737 * 2 1 4 4 C 1.46894 * 110.99995 * 123.95751 * 2 1 3 5 5 H 1.09002 * 109.47104 * 299.99727 * 4 2 1 6 6 C 1.52997 * 109.47515 * 59.99995 * 4 2 1 7 7 C 1.53000 * 109.47060 * 180.02562 * 6 4 2 8 8 C 1.53002 * 109.47233 * 299.99657 * 7 6 4 9 9 C 1.52997 * 109.46817 * 60.00194 * 8 7 6 10 10 H 1.09001 * 109.47289 * 180.02562 * 9 8 7 11 11 N 1.46496 * 109.47294 * 60.00190 * 9 8 7 12 12 S 1.65601 * 120.00134 * 94.99688 * 11 9 8 13 13 O 1.42098 * 104.27695 * 181.07223 * 12 11 9 14 14 O 1.42100 * 104.27646 * 308.92901 * 12 11 9 15 15 C 1.81400 * 104.45019 * 65.00335 * 12 11 9 16 16 C 1.52998 * 109.47492 * 179.97438 * 15 12 11 17 17 C 1.52995 * 109.47323 * 179.97438 * 16 15 12 18 18 C 1.50696 * 109.47033 * 180.02562 * 17 16 15 19 19 H 1.07997 * 120.00211 * 0.02562 * 18 17 16 20 20 C 1.37887 * 119.99908 * 180.02562 * 18 17 16 21 21 N 1.31507 * 119.99774 * 0.02562 * 20 18 17 22 22 Si 1.86800 * 119.99850 * 179.97438 * 20 18 17 23 23 H 1.48500 * 109.47057 * 60.00321 * 22 20 18 24 24 H 1.48502 * 109.46862 * 179.97438 * 22 20 18 25 25 H 1.48499 * 109.47256 * 300.00635 * 22 20 18 26 26 C 1.52999 * 109.46927 * 180.02562 * 4 2 1 27 27 H 1.09000 * 109.47281 * 296.04317 * 1 2 3 28 28 H 1.08998 * 109.47274 * 56.04226 * 1 2 3 29 29 H 1.09001 * 109.46887 * 176.04593 * 1 2 3 30 30 H 1.09003 * 109.46649 * 183.95663 * 3 2 1 31 31 H 1.08997 * 109.47179 * 303.95694 * 3 2 1 32 32 H 1.09001 * 109.46814 * 63.95866 * 3 2 1 33 33 H 1.09002 * 109.47153 * 59.99762 * 6 4 2 34 34 H 1.09001 * 109.46832 * 299.99953 * 6 4 2 35 35 H 1.08992 * 109.47399 * 59.99823 * 7 6 4 36 36 H 1.09004 * 109.46724 * 180.02562 * 7 6 4 37 37 H 1.08993 * 109.47662 * 180.02562 * 8 7 6 38 38 H 1.09002 * 109.47075 * 300.00932 * 8 7 6 39 39 H 0.97006 * 119.99718 * 274.99830 * 11 9 8 40 40 H 1.09006 * 109.46869 * 300.00418 * 15 12 11 41 41 H 1.08999 * 109.46761 * 59.99754 * 15 12 11 42 42 H 1.08997 * 109.46893 * 300.00312 * 16 15 12 43 43 H 1.09006 * 109.46829 * 59.99620 * 16 15 12 44 44 H 1.08996 * 109.47196 * 300.00493 * 17 16 15 45 45 H 1.08997 * 109.47109 * 60.00230 * 17 16 15 46 46 H 0.97007 * 119.99784 * 179.97438 * 21 20 18 47 47 H 1.09000 * 109.47486 * 59.99528 * 26 4 2 48 48 H 1.09002 * 109.46716 * 299.99610 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9954 -0.7660 1.1375 5 1 1.6460 -0.3201 2.0687 6 6 1.5049 -2.2125 1.0491 7 6 2.0528 -3.0101 2.2343 8 6 3.5823 -2.9874 2.2010 9 6 4.0728 -1.5409 2.2894 10 1 5.1624 -1.5246 2.2652 11 7 3.6026 -0.9414 3.5406 12 16 4.5814 -0.9384 4.8764 13 8 3.7986 -0.3113 5.8830 14 8 4.9980 -2.2905 5.0086 15 6 5.9813 0.1164 4.4095 16 6 6.9682 0.2001 5.5756 17 6 8.1493 1.0892 5.1815 18 6 9.1216 1.1711 6.3299 19 1 8.9178 0.6416 7.2488 20 6 10.2715 1.9221 6.2075 21 7 10.5193 2.5673 5.0887 22 14 11.4763 2.0242 7.6313 23 1 11.9703 0.6629 7.9603 24 1 12.6227 2.8871 7.2487 25 1 10.7942 2.6030 8.8165 26 6 3.5249 -0.7427 1.1040 27 1 -0.3634 0.4512 0.9233 28 1 -0.3634 0.5740 -0.8524 29 1 -0.3633 -1.0252 -0.0709 30 1 3.0828 1.3433 -0.0709 31 1 1.5897 1.9164 -0.8524 32 1 1.7044 1.8723 0.9234 33 1 1.8544 -2.6584 0.1179 34 1 0.4153 -2.2288 1.0732 35 1 1.7030 -2.5641 3.1652 36 1 1.7036 -4.0408 2.1710 37 1 3.9726 -3.5560 3.0450 38 1 3.9321 -3.4334 1.2699 39 1 2.7179 -0.5462 3.5867 40 1 6.4818 -0.3083 3.5392 41 1 5.6187 1.1157 4.1684 42 1 6.4675 0.6250 6.4455 43 1 7.3308 -0.7991 5.8171 44 1 8.6498 0.6640 4.3117 45 1 7.7870 2.0884 4.9397 46 1 11.3281 3.0960 5.0027 47 1 3.8741 0.2880 1.1671 48 1 3.8747 -1.1883 0.1727 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175079306.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:34 Heat of formation + Delta-G solvation = -117.237870 kcal Electronic energy + Delta-G solvation = -25864.913623 eV Core-core repulsion = 22272.928128 eV Total energy + Delta-G solvation = -3591.985495 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.64704 -38.19437 -37.36487 -37.00595 -36.47218 -34.19107 -34.11058 -31.03807 -30.15312 -29.66065 -28.23804 -25.63545 -25.02306 -23.29752 -22.46643 -21.94082 -20.97632 -19.81738 -18.75769 -18.57256 -17.41349 -17.16339 -16.91234 -16.53232 -16.46709 -15.87327 -15.67685 -15.36043 -15.27433 -14.82725 -14.49619 -14.32141 -14.08773 -13.76610 -13.55097 -13.39701 -13.29380 -13.19321 -13.11251 -13.03628 -12.96044 -12.73788 -12.65979 -12.53958 -12.37743 -12.24591 -12.22548 -12.13278 -11.75234 -11.54078 -11.43771 -11.33810 -11.05066 -10.97109 -10.57460 -10.30107 -9.26143 -8.23093 -6.34079 -0.72642 1.39890 1.42304 1.50275 1.79466 2.39492 2.75314 2.96959 3.10444 3.24271 3.68799 3.72037 3.82679 3.89729 3.98120 4.20021 4.26253 4.34023 4.38171 4.40150 4.45350 4.51805 4.55740 4.64217 4.66988 4.71190 4.75193 4.78468 4.94838 4.98967 5.05264 5.06258 5.09182 5.18670 5.23319 5.28595 5.35227 5.42331 5.44741 5.54259 5.62628 5.78948 6.08176 6.13335 6.15821 6.19403 6.81331 7.35193 8.88166 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020007 B = 0.002870 C = 0.002669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1399.198392 B = 9754.559915 C =10489.522176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.549 5.549 3 C 0.016 3.984 4 C 0.082 3.918 5 H 0.036 0.964 6 C -0.106 4.106 7 C -0.116 4.116 8 C -0.140 4.140 9 C 0.147 3.853 10 H 0.096 0.904 11 N -1.103 6.103 12 S 2.627 3.373 13 O -0.997 6.997 14 O -0.983 6.983 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.032 3.968 18 C -0.555 4.555 19 H 0.059 0.941 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.962 3.038 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.268 1.268 26 C -0.117 4.117 27 H 0.021 0.979 28 H 0.073 0.927 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.022 0.978 33 H 0.075 0.925 34 H 0.067 0.933 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.061 0.939 38 H 0.090 0.910 39 H 0.420 0.580 40 H 0.147 0.853 41 H 0.144 0.856 42 H 0.063 0.937 43 H 0.066 0.934 44 H 0.004 0.996 45 H 0.002 0.998 46 H 0.265 0.735 47 H 0.077 0.923 48 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.693 -7.762 -13.326 25.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.273 5.273 3 C -0.132 4.132 4 C -0.027 4.027 5 H 0.054 0.946 6 C -0.144 4.144 7 C -0.154 4.154 8 C -0.179 4.179 9 C 0.040 3.960 10 H 0.114 0.886 11 N -0.865 5.865 12 S 2.722 3.278 13 O -0.987 6.987 14 O -0.973 6.973 15 C -0.741 4.741 16 C -0.146 4.146 17 C -0.006 4.006 18 C -0.593 4.593 19 H 0.078 0.922 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.193 1.193 26 C -0.156 4.156 27 H 0.040 0.960 28 H 0.092 0.908 29 H 0.096 0.904 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.041 0.959 33 H 0.094 0.906 34 H 0.086 0.914 35 H 0.072 0.928 36 H 0.091 0.909 37 H 0.080 0.920 38 H 0.108 0.892 39 H 0.257 0.743 40 H 0.165 0.835 41 H 0.163 0.837 42 H 0.082 0.918 43 H 0.085 0.915 44 H 0.023 0.977 45 H 0.020 0.980 46 H 0.074 0.926 47 H 0.096 0.904 48 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.440 -8.428 -13.052 25.674 hybrid contribution 0.476 1.366 1.019 1.770 sum -19.963 -7.062 -12.033 24.356 Atomic orbital electron populations 1.22478 0.86926 1.02867 1.00582 1.62062 1.08387 1.13968 1.42874 1.22510 1.01561 0.88527 1.00624 1.21673 0.95002 0.94707 0.91270 0.94608 1.21590 1.00448 0.93409 0.98960 1.21461 0.95073 1.00657 0.98192 1.22080 0.96747 0.95751 1.03367 1.21016 0.99139 0.93043 0.82790 0.88565 1.55503 1.29576 1.74472 1.26916 1.04301 0.75441 0.74845 0.73167 1.93527 1.68432 1.78993 1.57773 1.93540 1.83947 1.34231 1.85601 1.30516 1.16913 1.17284 1.09377 1.21306 0.96360 1.01585 0.95314 1.18942 0.91909 0.93978 0.95754 1.21721 1.06181 1.30180 1.01177 0.92235 1.25923 0.99972 0.94913 0.98657 1.70058 1.27236 1.32166 1.27435 0.85550 0.78085 0.78511 0.79242 1.19204 1.20572 1.19289 1.21941 0.94543 1.01108 0.97999 0.95990 0.90825 0.90446 0.90568 0.90799 0.95950 0.90628 0.91394 0.92779 0.90901 0.91975 0.89150 0.74318 0.83515 0.83736 0.91825 0.91487 0.97732 0.97964 0.92604 0.90448 0.88651 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.21 127.69 1.18 1.41 16 2 N -0.55 -7.78 4.89 -923.28 -4.51 -12.29 16 3 C 0.02 0.21 9.11 127.69 1.16 1.38 16 4 C 0.08 1.15 1.76 44.92 0.08 1.23 16 5 H 0.04 0.55 6.50 -2.39 -0.02 0.53 16 6 C -0.11 -1.37 4.97 30.59 0.15 -1.21 16 7 C -0.12 -1.71 5.77 30.60 0.18 -1.54 16 8 C -0.14 -2.34 5.64 30.59 0.17 -2.16 16 9 C 0.15 2.45 2.88 45.01 0.13 2.58 16 10 H 0.10 1.48 7.15 -2.39 -0.02 1.47 16 11 N -1.10 -21.55 4.63 -169.32 -0.78 -22.33 16 12 S 2.63 73.24 5.38 -56.49 -0.30 72.94 16 13 O -1.00 -34.36 18.08 -127.65 -2.31 -36.66 16 14 O -0.98 -32.69 17.11 -127.65 -2.18 -34.88 16 15 C -0.61 -17.82 5.96 71.98 0.43 -17.39 16 16 C -0.11 -4.30 5.16 30.59 0.16 -4.14 16 17 C 0.03 1.66 4.97 29.84 0.15 1.81 16 18 C -0.55 -31.54 9.11 25.60 0.23 -31.31 16 19 H 0.06 3.26 7.74 -2.91 -0.02 3.24 16 20 C 0.00 0.21 5.46 84.66 0.46 0.68 16 21 N -0.93 -55.54 13.29 21.45 0.28 -55.26 16 22 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 23 H -0.27 -11.81 7.11 99.48 0.71 -11.10 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.27 -11.87 7.11 99.48 0.71 -11.17 16 26 C -0.12 -1.62 4.56 30.61 0.14 -1.48 16 27 H 0.02 0.27 8.14 -2.39 -0.02 0.25 16 28 H 0.07 0.77 8.12 -2.39 -0.02 0.75 16 29 H 0.08 0.82 6.30 -2.39 -0.02 0.81 16 30 H 0.08 1.00 6.23 -2.39 -0.01 0.99 16 31 H 0.07 0.88 8.12 -2.39 -0.02 0.86 16 32 H 0.02 0.31 8.14 -2.39 -0.02 0.30 16 33 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.07 0.80 6.40 -2.39 -0.02 0.79 16 35 H 0.05 0.90 7.44 -2.39 -0.02 0.88 16 36 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.06 1.32 7.43 -2.39 -0.02 1.30 16 38 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.42 7.14 6.78 -96.74 -0.66 6.49 16 40 H 0.15 3.65 7.44 -2.39 -0.02 3.63 16 41 H 0.14 3.74 8.14 -2.39 -0.02 3.72 16 42 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 43 H 0.07 2.65 8.14 -2.38 -0.02 2.63 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 46 H 0.27 14.89 8.31 -92.70 -0.77 14.12 16 47 H 0.08 1.05 6.35 -2.39 -0.02 1.04 16 48 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -72.78 378.66 -2.89 -75.67 By element: Atomic # 1 Polarization: 16.56 SS G_CDS: 0.27 Total: 16.84 kcal Atomic # 6 Polarization: -54.77 SS G_CDS: 4.62 Total: -50.15 kcal Atomic # 7 Polarization: -84.87 SS G_CDS: -5.01 Total: -89.88 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -4.49 Total: -71.54 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 73.24 SS G_CDS: -0.30 Total: 72.94 kcal Total: -72.78 -2.89 -75.67 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175079306.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.570 kcal (2) G-P(sol) polarization free energy of solvation -72.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds