Wall clock time and date at job start Tue Mar 31 2020 12:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00688 * 2 1 4 4 C 1.46901 * 111.00019 * 123.95829 * 2 1 3 5 5 H 1.08994 * 109.47430 * 54.99479 * 4 2 1 6 6 C 1.53005 * 109.46914 * 294.99366 * 4 2 1 7 7 C 1.52998 * 109.47295 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47062 * 60.00064 * 7 6 4 9 9 C 1.52999 * 109.47147 * 300.00381 * 8 7 6 10 10 H 1.09005 * 109.47138 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.46982 * 299.99708 * 9 8 7 12 12 S 1.65606 * 119.99850 * 265.00219 * 11 9 8 13 13 O 1.42094 * 104.27817 * 308.92879 * 12 11 9 14 14 O 1.42106 * 104.27580 * 181.07110 * 12 11 9 15 15 C 1.81396 * 104.45103 * 65.00095 * 12 11 9 16 16 C 1.52997 * 109.47360 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00489 * 22 20 18 24 24 H 1.48505 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00464 * 22 20 18 26 26 C 1.52998 * 109.47451 * 59.99857 * 9 8 7 27 27 H 1.09001 * 109.47158 * 296.04619 * 1 2 3 28 28 H 1.09008 * 109.46999 * 56.04535 * 1 2 3 29 29 H 1.08996 * 109.47418 * 176.04636 * 1 2 3 30 30 H 1.08991 * 109.47496 * 183.95245 * 3 2 1 31 31 H 1.09001 * 109.46888 * 303.95603 * 3 2 1 32 32 H 1.08994 * 109.46745 * 63.94964 * 3 2 1 33 33 H 1.08994 * 109.47165 * 300.00276 * 6 4 2 34 34 H 1.09006 * 109.46628 * 60.00326 * 6 4 2 35 35 H 1.09004 * 109.47138 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47281 * 300.00474 * 7 6 4 37 37 H 1.08994 * 109.47330 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46738 * 60.00078 * 8 7 6 39 39 H 0.96995 * 119.99965 * 85.00396 * 11 9 8 40 40 H 1.09002 * 109.47134 * 59.99751 * 15 12 11 41 41 H 1.08998 * 109.46953 * 300.00489 * 15 12 11 42 42 H 1.09002 * 109.47153 * 59.99820 * 16 15 12 43 43 H 1.09001 * 109.46832 * 300.00011 * 16 15 12 44 44 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 45 45 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 46 46 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.47281 * 59.99784 * 26 9 8 48 48 H 1.08997 * 109.47233 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.5753 -1.7717 1.1240 6 6 1.6091 -0.0695 2.4439 7 6 2.1568 -0.8677 3.6288 8 6 3.6812 -0.9509 3.5266 9 6 4.0674 -1.6474 2.2202 10 1 5.1535 -1.7063 2.1472 11 7 3.5023 -2.9988 2.2017 12 16 4.4183 -4.2862 2.6977 13 8 5.6278 -4.1596 1.9628 14 8 3.5676 -5.4106 2.5203 15 6 4.7104 -3.9810 4.4617 16 6 5.5561 -5.1161 5.0426 17 6 5.8019 -4.8589 6.5306 18 6 6.6344 -5.9773 7.1028 19 1 6.9562 -6.7899 6.4684 20 6 6.9859 -5.9625 8.4359 21 7 6.5944 -4.9727 9.2083 22 14 8.0172 -7.3491 9.1454 23 1 9.3181 -7.4134 8.4320 24 1 8.2559 -7.0995 10.5897 25 1 7.2970 -8.6370 8.9785 26 6 3.5197 -0.8492 1.0354 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8524 32 1 1.7045 1.8723 0.9232 33 1 2.0292 0.9361 2.4575 34 1 0.5231 -0.0107 2.5169 35 1 1.8812 -0.3717 4.5595 36 1 1.7364 -1.8733 3.6150 37 1 4.0714 -1.5191 4.3709 38 1 4.1016 0.0546 3.5404 39 1 2.5916 -3.1396 1.8989 40 1 3.7556 -3.9351 4.9855 41 1 5.2378 -3.0351 4.5843 42 1 6.5109 -5.1625 4.5188 43 1 5.0282 -6.0618 4.9200 44 1 6.3296 -3.9132 6.6536 45 1 4.8470 -4.8129 7.0540 46 1 6.8420 -4.9621 10.1461 47 1 3.9402 0.1563 1.0492 48 1 3.7946 -1.3457 0.1047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000175079324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:37 Heat of formation + Delta-G solvation = -91.113255 kcal Electronic energy + Delta-G solvation = -25938.447948 eV Core-core repulsion = 22347.595301 eV Total energy + Delta-G solvation = -3590.852647 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.16884 -36.99579 -36.65418 -35.71858 -34.68069 -33.13834 -32.19987 -30.42001 -29.22632 -27.88767 -27.79059 -24.67143 -23.71778 -22.88481 -21.33926 -20.69701 -19.88903 -18.77178 -17.67338 -16.66658 -16.34777 -16.12922 -15.82573 -15.47035 -15.06707 -14.92349 -14.80426 -14.50123 -14.31826 -14.18164 -13.36853 -13.22514 -12.84152 -12.59884 -12.50130 -12.29628 -12.23813 -12.08808 -11.97493 -11.89104 -11.77518 -11.74890 -11.55402 -11.33775 -11.22505 -10.98892 -10.89700 -10.83190 -10.79960 -10.42760 -10.39664 -9.94405 -9.67628 -9.33013 -9.08766 -8.58490 -8.40785 -6.06034 -4.09025 0.49732 2.86959 3.31987 3.35757 3.39095 3.57815 3.96991 4.33616 4.39194 4.42317 4.46459 4.59795 4.76946 4.79227 4.88434 4.96696 5.03245 5.11125 5.15523 5.16565 5.19431 5.24071 5.26526 5.30387 5.38208 5.42314 5.55108 5.56278 5.63685 5.76731 5.78205 5.83109 5.89310 6.01808 6.05177 6.16807 6.27407 6.45559 6.68837 6.71042 6.87019 6.94374 7.56358 7.66664 7.91949 8.32671 8.97011 9.55659 11.05143 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.002770 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.435415 B =10104.357291 C =10664.409868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.540 5.540 3 C 0.016 3.984 4 C 0.082 3.918 5 H 0.083 0.917 6 C -0.154 4.154 7 C -0.114 4.114 8 C -0.149 4.149 9 C 0.150 3.850 10 H 0.098 0.902 11 N -1.117 6.117 12 S 2.599 3.401 13 O -0.962 6.962 14 O -0.965 6.965 15 C -0.610 4.610 16 C -0.106 4.106 17 C 0.032 3.968 18 C -0.527 4.527 19 H 0.057 0.943 20 C 0.058 3.942 21 N -0.896 5.896 22 Si 0.894 3.106 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.276 1.276 26 C -0.113 4.113 27 H 0.029 0.971 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.064 0.936 32 H 0.030 0.970 33 H 0.067 0.933 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.076 0.924 39 H 0.412 0.588 40 H 0.129 0.871 41 H 0.127 0.873 42 H 0.065 0.935 43 H 0.065 0.935 44 H 0.020 0.980 45 H 0.020 0.980 46 H 0.262 0.738 47 H 0.077 0.923 48 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.976 14.776 -16.392 25.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.262 5.262 3 C -0.132 4.132 4 C -0.026 4.026 5 H 0.101 0.899 6 C -0.193 4.193 7 C -0.152 4.152 8 C -0.188 4.188 9 C 0.042 3.958 10 H 0.116 0.884 11 N -0.875 5.875 12 S 2.695 3.305 13 O -0.952 6.952 14 O -0.955 6.955 15 C -0.742 4.742 16 C -0.145 4.145 17 C -0.007 4.007 18 C -0.565 4.565 19 H 0.076 0.924 20 C -0.143 4.143 21 N -0.535 5.535 22 Si 0.722 3.278 23 H -0.201 1.201 24 H -0.213 1.213 25 H -0.201 1.201 26 C -0.153 4.153 27 H 0.048 0.952 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.049 0.951 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.083 0.917 36 H 0.085 0.915 37 H 0.095 0.905 38 H 0.095 0.905 39 H 0.247 0.753 40 H 0.147 0.853 41 H 0.146 0.854 42 H 0.084 0.916 43 H 0.084 0.916 44 H 0.038 0.962 45 H 0.038 0.962 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -11.352 13.937 -17.202 24.880 hybrid contribution -0.330 0.165 1.780 1.818 sum -11.682 14.102 -15.422 23.941 Atomic orbital electron populations 1.22413 0.87506 1.02357 1.00510 1.62234 1.07811 1.13963 1.42229 1.22486 1.01216 0.89062 1.00485 1.21750 0.95532 0.97610 0.87755 0.89854 1.22246 1.00844 1.00239 0.95951 1.21403 0.95383 1.00695 0.97702 1.22244 0.96862 1.01717 0.97961 1.20818 0.98495 0.81477 0.94993 0.88443 1.55811 1.28499 1.20740 1.82464 1.05325 0.74024 0.73041 0.78139 1.93567 1.47159 1.85707 1.68789 1.93576 1.66671 1.49159 1.86124 1.30657 1.10615 1.10064 1.22850 1.21498 0.97302 0.93698 1.02019 1.19047 0.97197 0.97366 0.87051 1.21223 1.32943 1.07678 0.94649 0.92433 1.25014 0.96140 0.96046 0.97146 1.69942 1.45942 1.31421 1.06176 0.86618 0.80821 0.82473 0.77892 1.20105 1.21259 1.20121 1.21820 0.94283 1.00682 0.98474 0.95247 0.91522 0.91343 0.90929 0.91683 0.95119 0.91473 0.91896 0.91654 0.91459 0.90520 0.90539 0.75274 0.85292 0.85427 0.91598 0.91627 0.96154 0.96163 0.92853 0.90453 0.90067 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.13 9.31 60.06 0.56 0.69 16 2 N -0.54 -4.17 5.01 -243.18 -1.22 -5.39 16 3 C 0.02 0.10 8.82 60.07 0.53 0.63 16 4 C 0.08 0.63 2.05 -67.71 -0.14 0.49 16 5 H 0.08 0.67 6.49 -51.93 -0.34 0.34 16 6 C -0.15 -1.10 4.51 -26.73 -0.12 -1.22 16 7 C -0.11 -0.89 5.77 -26.73 -0.15 -1.05 16 8 C -0.15 -1.24 5.60 -26.73 -0.15 -1.39 16 9 C 0.15 1.37 3.02 -67.93 -0.20 1.16 16 10 H 0.10 0.93 7.48 -51.93 -0.39 0.54 16 11 N -1.12 -11.65 4.63 -4.89 -0.02 -11.67 16 12 S 2.60 37.62 5.44 -107.50 -0.58 37.04 16 13 O -0.96 -16.77 17.39 -57.54 -1.00 -17.77 16 14 O -0.96 -16.94 18.08 -57.54 -1.04 -17.98 16 15 C -0.61 -9.14 5.22 37.16 0.19 -8.95 16 16 C -0.11 -2.12 5.16 -26.73 -0.14 -2.26 16 17 C 0.03 0.80 4.97 -27.88 -0.14 0.66 16 18 C -0.53 -14.79 9.11 -34.44 -0.31 -15.11 16 19 H 0.06 1.57 7.74 -52.49 -0.41 1.16 16 20 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 21 N -0.90 -26.49 13.29 55.43 0.74 -25.75 16 22 Si 0.89 21.57 29.54 -169.99 -5.02 16.55 16 23 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 25 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 26 C -0.11 -0.91 4.71 -26.73 -0.13 -1.04 16 27 H 0.03 0.18 6.44 -51.93 -0.33 -0.15 16 28 H 0.07 0.39 8.12 -51.92 -0.42 -0.03 16 29 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.07 0.46 6.33 -51.93 -0.33 0.13 16 31 H 0.06 0.38 8.12 -51.93 -0.42 -0.04 16 32 H 0.03 0.19 6.28 -51.93 -0.33 -0.14 16 33 H 0.07 0.47 6.39 -51.93 -0.33 0.14 16 34 H 0.06 0.45 6.52 -51.93 -0.34 0.11 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.54 7.45 -51.93 -0.39 0.16 16 37 H 0.08 0.69 5.78 -51.93 -0.30 0.39 16 38 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.41 3.72 6.78 -34.48 -0.23 3.48 16 40 H 0.13 1.72 8.14 -51.92 -0.42 1.30 16 41 H 0.13 1.68 6.77 -51.93 -0.35 1.33 16 42 H 0.07 1.30 8.14 -51.93 -0.42 0.87 16 43 H 0.07 1.30 8.14 -51.93 -0.42 0.88 16 44 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 45 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 46 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 47 H 0.08 0.54 6.43 -51.93 -0.33 0.20 16 48 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 LS Contribution 373.08 15.07 5.62 5.62 Total: -1.00 -34.45 373.08 -11.01 -45.45 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -8.18 Total: -0.28 kcal Atomic # 6 Polarization: -25.52 SS G_CDS: -0.30 Total: -25.82 kcal Atomic # 7 Polarization: -42.31 SS G_CDS: -0.50 Total: -42.82 kcal Atomic # 8 Polarization: -33.70 SS G_CDS: -2.04 Total: -35.75 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Atomic # 16 Polarization: 37.62 SS G_CDS: -0.58 Total: 37.04 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.45 -11.01 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175079324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.662 kcal (2) G-P(sol) polarization free energy of solvation -34.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.006 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.451 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.113 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds