Wall clock time and date at job start Tue Mar 31 2020 12:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46894 * 1 3 3 C 1.46901 * 111.00688 * 2 1 4 4 C 1.46901 * 111.00019 * 123.95829 * 2 1 3 5 5 H 1.08994 * 109.47430 * 54.99479 * 4 2 1 6 6 C 1.53005 * 109.46914 * 294.99366 * 4 2 1 7 7 C 1.52998 * 109.47295 * 179.97438 * 6 4 2 8 8 C 1.53002 * 109.47062 * 60.00064 * 7 6 4 9 9 C 1.52999 * 109.47147 * 300.00381 * 8 7 6 10 10 H 1.09005 * 109.47138 * 179.97438 * 9 8 7 11 11 N 1.46498 * 109.46982 * 299.99708 * 9 8 7 12 12 S 1.65606 * 119.99850 * 265.00219 * 11 9 8 13 13 O 1.42094 * 104.27817 * 308.92879 * 12 11 9 14 14 O 1.42106 * 104.27580 * 181.07110 * 12 11 9 15 15 C 1.81396 * 104.45103 * 65.00095 * 12 11 9 16 16 C 1.52997 * 109.47360 * 179.97438 * 15 12 11 17 17 C 1.53000 * 109.47060 * 180.02562 * 16 15 12 18 18 C 1.50703 * 109.46912 * 179.97438 * 17 16 15 19 19 H 1.08001 * 119.99776 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00001 * 179.97438 * 18 17 16 21 21 N 1.31511 * 120.00114 * 0.02562 * 20 18 17 22 22 Si 1.86803 * 119.99955 * 179.97438 * 20 18 17 23 23 H 1.48506 * 109.46725 * 60.00489 * 22 20 18 24 24 H 1.48505 * 109.46988 * 180.02562 * 22 20 18 25 25 H 1.48494 * 109.47116 * 300.00464 * 22 20 18 26 26 C 1.52998 * 109.47451 * 59.99857 * 9 8 7 27 27 H 1.09001 * 109.47158 * 296.04619 * 1 2 3 28 28 H 1.09008 * 109.46999 * 56.04535 * 1 2 3 29 29 H 1.08996 * 109.47418 * 176.04636 * 1 2 3 30 30 H 1.08991 * 109.47496 * 183.95245 * 3 2 1 31 31 H 1.09001 * 109.46888 * 303.95603 * 3 2 1 32 32 H 1.08994 * 109.46745 * 63.94964 * 3 2 1 33 33 H 1.08994 * 109.47165 * 300.00276 * 6 4 2 34 34 H 1.09006 * 109.46628 * 60.00326 * 6 4 2 35 35 H 1.09004 * 109.47138 * 180.02562 * 7 6 4 36 36 H 1.09003 * 109.47281 * 300.00474 * 7 6 4 37 37 H 1.08994 * 109.47330 * 179.97438 * 8 7 6 38 38 H 1.09003 * 109.46738 * 60.00078 * 8 7 6 39 39 H 0.96995 * 119.99965 * 85.00396 * 11 9 8 40 40 H 1.09002 * 109.47134 * 59.99751 * 15 12 11 41 41 H 1.08998 * 109.46953 * 300.00489 * 15 12 11 42 42 H 1.09002 * 109.47153 * 59.99820 * 16 15 12 43 43 H 1.09001 * 109.46832 * 300.00011 * 16 15 12 44 44 H 1.09001 * 109.47194 * 299.99650 * 17 16 15 45 45 H 1.08992 * 109.47399 * 59.99823 * 17 16 15 46 46 H 0.97000 * 120.00354 * 180.02562 * 21 20 18 47 47 H 1.09003 * 109.47281 * 59.99784 * 26 9 8 48 48 H 1.08997 * 109.47233 * 180.02562 * 26 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 1 1.5753 -1.7717 1.1240 6 6 1.6091 -0.0695 2.4439 7 6 2.1568 -0.8677 3.6288 8 6 3.6812 -0.9509 3.5266 9 6 4.0674 -1.6474 2.2202 10 1 5.1535 -1.7063 2.1472 11 7 3.5023 -2.9988 2.2017 12 16 4.4183 -4.2862 2.6977 13 8 5.6278 -4.1596 1.9628 14 8 3.5676 -5.4106 2.5203 15 6 4.7104 -3.9810 4.4617 16 6 5.5561 -5.1161 5.0426 17 6 5.8019 -4.8589 6.5306 18 6 6.6344 -5.9773 7.1028 19 1 6.9562 -6.7899 6.4684 20 6 6.9859 -5.9625 8.4359 21 7 6.5944 -4.9727 9.2083 22 14 8.0172 -7.3491 9.1454 23 1 9.3181 -7.4134 8.4320 24 1 8.2559 -7.0995 10.5897 25 1 7.2970 -8.6370 8.9785 26 6 3.5197 -0.8492 1.0354 27 1 -0.3633 0.4512 0.9233 28 1 -0.3633 0.5740 -0.8525 29 1 -0.3634 -1.0252 -0.0709 30 1 3.0828 1.3431 -0.0708 31 1 1.5899 1.9163 -0.8524 32 1 1.7045 1.8723 0.9232 33 1 2.0292 0.9361 2.4575 34 1 0.5231 -0.0107 2.5169 35 1 1.8812 -0.3717 4.5595 36 1 1.7364 -1.8733 3.6150 37 1 4.0714 -1.5191 4.3709 38 1 4.1016 0.0546 3.5404 39 1 2.5916 -3.1396 1.8989 40 1 3.7556 -3.9351 4.9855 41 1 5.2378 -3.0351 4.5843 42 1 6.5109 -5.1625 4.5188 43 1 5.0282 -6.0618 4.9200 44 1 6.3296 -3.9132 6.6536 45 1 4.8470 -4.8129 7.0540 46 1 6.8420 -4.9621 10.1461 47 1 3.9402 0.1563 1.0492 48 1 3.7946 -1.3457 0.1047 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000175079324.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:26:37 Heat of formation + Delta-G solvation = -116.379401 kcal Electronic energy + Delta-G solvation = -25939.543570 eV Core-core repulsion = 22347.595301 eV Total energy + Delta-G solvation = -3591.948269 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.80824 -38.19718 -37.42613 -37.02939 -36.46346 -34.17609 -33.88053 -31.08145 -29.98220 -29.55318 -28.39743 -25.66693 -25.16959 -23.55076 -22.48675 -21.88848 -20.84953 -19.70034 -18.75870 -18.55449 -17.37665 -17.16778 -16.84038 -16.54461 -16.38300 -15.96643 -15.60297 -15.52742 -15.32914 -14.95630 -14.49296 -14.15299 -14.08444 -13.82243 -13.55110 -13.49411 -13.21122 -13.18154 -13.08618 -12.97560 -12.78448 -12.74006 -12.68761 -12.63258 -12.49199 -12.30978 -12.16668 -11.99008 -11.74506 -11.57206 -11.45256 -11.35272 -11.13168 -10.99224 -10.56588 -10.33724 -9.12983 -8.22319 -6.33070 -0.71370 1.40239 1.42608 1.50492 1.80394 2.40000 2.77450 3.02138 3.11224 3.25085 3.71708 3.73794 3.80543 3.90690 3.96806 4.14456 4.20228 4.33369 4.35670 4.40502 4.48820 4.52731 4.57170 4.62455 4.67363 4.71350 4.72497 4.83881 4.92240 4.99430 5.05520 5.07280 5.09473 5.17647 5.20667 5.22034 5.35637 5.40627 5.46123 5.52342 5.64351 5.80085 6.11997 6.16432 6.16931 6.20526 6.82350 7.36092 8.88861 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025485 B = 0.002770 C = 0.002625 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1098.435415 B =10104.357291 C =10664.409868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.553 5.553 3 C 0.015 3.985 4 C 0.082 3.918 5 H 0.078 0.922 6 C -0.146 4.146 7 C -0.115 4.115 8 C -0.149 4.149 9 C 0.145 3.855 10 H 0.095 0.905 11 N -1.101 6.101 12 S 2.627 3.373 13 O -0.990 6.990 14 O -0.995 6.995 15 C -0.609 4.609 16 C -0.106 4.106 17 C 0.033 3.967 18 C -0.553 4.553 19 H 0.059 0.941 20 C 0.004 3.996 21 N -0.929 5.929 22 Si 0.961 3.039 23 H -0.267 1.267 24 H -0.281 1.281 25 H -0.268 1.268 26 C -0.108 4.108 27 H 0.033 0.967 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.074 0.926 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.072 0.928 34 H 0.064 0.936 35 H 0.067 0.933 36 H 0.064 0.936 37 H 0.069 0.931 38 H 0.091 0.909 39 H 0.422 0.578 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.065 0.935 43 H 0.064 0.936 44 H 0.004 0.996 45 H 0.003 0.997 46 H 0.265 0.735 47 H 0.092 0.908 48 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.251 15.473 -16.907 25.988 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 N -0.276 5.276 3 C -0.133 4.133 4 C -0.026 4.026 5 H 0.096 0.904 6 C -0.185 4.185 7 C -0.153 4.153 8 C -0.188 4.188 9 C 0.038 3.962 10 H 0.113 0.887 11 N -0.863 5.863 12 S 2.722 3.278 13 O -0.980 6.980 14 O -0.985 6.985 15 C -0.740 4.740 16 C -0.145 4.145 17 C -0.005 4.005 18 C -0.591 4.591 19 H 0.077 0.923 20 C -0.195 4.195 21 N -0.569 5.569 22 Si 0.786 3.214 23 H -0.192 1.192 24 H -0.206 1.206 25 H -0.193 1.193 26 C -0.148 4.148 27 H 0.051 0.949 28 H 0.091 0.909 29 H 0.084 0.916 30 H 0.092 0.908 31 H 0.088 0.912 32 H 0.053 0.947 33 H 0.090 0.910 34 H 0.083 0.917 35 H 0.086 0.914 36 H 0.082 0.918 37 H 0.088 0.912 38 H 0.110 0.890 39 H 0.259 0.741 40 H 0.164 0.836 41 H 0.165 0.835 42 H 0.084 0.916 43 H 0.082 0.918 44 H 0.023 0.977 45 H 0.021 0.979 46 H 0.074 0.926 47 H 0.110 0.890 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -11.634 14.630 -17.724 25.759 hybrid contribution -0.286 0.028 1.903 1.924 sum -11.921 14.658 -15.821 24.643 Atomic orbital electron populations 1.22432 0.86962 1.02421 1.00985 1.62234 1.08445 1.14676 1.42217 1.22515 1.01321 0.88508 1.00939 1.21716 0.95150 0.97548 0.88210 0.90415 1.22167 1.00922 1.00215 0.95170 1.21419 0.94992 1.00743 0.98175 1.22256 0.97313 1.02310 0.96933 1.21018 0.98458 0.80591 0.96170 0.88682 1.55430 1.28654 1.20484 1.81751 1.04259 0.73280 0.72890 0.77322 1.93532 1.48846 1.86275 1.69343 1.93530 1.67287 1.51328 1.86388 1.30616 1.10863 1.08978 1.23502 1.21310 0.98463 0.95699 0.99059 1.18939 0.95574 0.95843 0.90168 1.21721 1.33485 1.08607 0.95312 0.92266 1.25912 0.97347 0.98594 0.97612 1.70055 1.47086 1.33222 1.06542 0.85560 0.79284 0.79359 0.77242 1.19228 1.20619 1.19315 1.21781 0.94669 1.01052 0.97279 0.94896 0.90888 0.91554 0.90763 0.91180 0.94713 0.90959 0.91715 0.91436 0.91776 0.91247 0.89036 0.74091 0.83565 0.83516 0.91590 0.91776 0.97730 0.97904 0.92637 0.88978 0.91062 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.23 9.31 127.69 1.19 1.42 16 2 N -0.55 -7.60 5.01 -923.30 -4.62 -12.22 16 3 C 0.02 0.17 8.82 127.69 1.13 1.29 16 4 C 0.08 1.13 2.05 44.92 0.09 1.22 16 5 H 0.08 1.14 6.49 -2.39 -0.02 1.12 16 6 C -0.15 -1.78 4.51 30.60 0.14 -1.64 16 7 C -0.12 -1.59 5.77 30.59 0.18 -1.42 16 8 C -0.15 -2.20 5.60 30.59 0.17 -2.03 16 9 C 0.14 2.41 3.02 44.99 0.14 2.54 16 10 H 0.10 1.67 7.48 -2.38 -0.02 1.65 16 11 N -1.10 -21.58 4.63 -169.39 -0.78 -22.37 16 12 S 2.63 74.11 5.44 -56.49 -0.31 73.81 16 13 O -0.99 -33.89 17.39 -127.65 -2.22 -36.11 16 14 O -1.00 -34.40 18.08 -127.65 -2.31 -36.71 16 15 C -0.61 -17.79 5.22 71.98 0.38 -17.41 16 16 C -0.11 -4.27 5.16 30.59 0.16 -4.12 16 17 C 0.03 1.69 4.97 29.85 0.15 1.83 16 18 C -0.55 -31.39 9.11 25.60 0.23 -31.15 16 19 H 0.06 3.24 7.74 -2.91 -0.02 3.22 16 20 C 0.00 0.21 5.46 84.66 0.46 0.67 16 21 N -0.93 -55.44 13.29 21.45 0.28 -55.16 16 22 Si 0.96 44.10 29.54 68.60 2.03 46.13 16 23 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 24 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 25 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 26 C -0.11 -1.56 4.71 30.59 0.14 -1.41 16 27 H 0.03 0.36 6.44 -2.39 -0.02 0.34 16 28 H 0.07 0.74 8.12 -2.38 -0.02 0.72 16 29 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.07 0.78 6.33 -2.39 -0.02 0.76 16 31 H 0.07 0.70 8.12 -2.39 -0.02 0.68 16 32 H 0.03 0.35 6.28 -2.39 -0.02 0.34 16 33 H 0.07 0.83 6.39 -2.39 -0.02 0.81 16 34 H 0.06 0.79 6.52 -2.38 -0.02 0.77 16 35 H 0.07 0.92 8.14 -2.38 -0.02 0.90 16 36 H 0.06 0.92 7.45 -2.39 -0.02 0.91 16 37 H 0.07 1.14 5.78 -2.39 -0.01 1.12 16 38 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 39 H 0.42 7.04 6.78 -96.75 -0.66 6.38 16 40 H 0.15 3.76 8.14 -2.39 -0.02 3.74 16 41 H 0.15 3.70 6.77 -2.39 -0.02 3.69 16 42 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 43 H 0.06 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.00 0.23 8.14 -2.39 -0.02 0.21 16 45 H 0.00 0.14 8.14 -2.39 -0.02 0.12 16 46 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 47 H 0.09 1.07 6.43 -2.39 -0.02 1.05 16 48 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -73.08 373.08 -3.09 -76.18 By element: Atomic # 1 Polarization: 16.37 SS G_CDS: 0.29 Total: 16.65 kcal Atomic # 6 Polarization: -54.75 SS G_CDS: 4.55 Total: -50.20 kcal Atomic # 7 Polarization: -84.62 SS G_CDS: -5.12 Total: -89.74 kcal Atomic # 8 Polarization: -68.29 SS G_CDS: -4.53 Total: -72.82 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.13 kcal Atomic # 16 Polarization: 74.11 SS G_CDS: -0.31 Total: 73.81 kcal Total: -73.08 -3.09 -76.18 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000175079324.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.202 kcal (2) G-P(sol) polarization free energy of solvation -73.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.095 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds