Wall clock time and date at job start Tue Mar 31 2020 12:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46494 * 109.47593 * 2 1 4 4 C 1.46505 * 120.00080 * 84.99783 * 3 2 1 5 5 C 1.52997 * 109.47212 * 275.00347 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.48533 * 110.99670 * 52.60024 * 7 6 5 9 9 C 1.54936 * 103.22827 * 159.72645 * 8 7 6 10 10 C 1.54602 * 102.91755 * 322.58844 * 9 8 7 11 11 C 1.47895 * 111.00585 * 169.99973 * 7 6 5 12 12 S 1.65596 * 120.00265 * 265.00204 * 3 2 1 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 3 2 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 3 2 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 3 2 16 16 C 1.52992 * 109.47390 * 179.97438 * 15 12 3 17 17 C 1.50699 * 109.47248 * 180.02562 * 16 15 12 18 18 H 1.07998 * 119.99937 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00222 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00193 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47222 * 89.99955 * 21 19 17 23 23 H 1.48499 * 109.47427 * 209.99949 * 21 19 17 24 24 H 1.48508 * 109.47062 * 330.00136 * 21 19 17 25 25 H 1.09004 * 109.47160 * 59.99635 * 1 2 3 26 26 H 1.09001 * 109.47749 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47346 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47534 * 239.99613 * 2 1 3 29 29 H 1.09004 * 109.47160 * 120.00365 * 2 1 3 30 30 H 1.09002 * 109.47068 * 35.00407 * 4 3 2 31 31 H 1.09001 * 109.47372 * 155.00495 * 4 3 2 32 32 H 1.09002 * 109.47153 * 300.00008 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99637 * 5 4 3 34 34 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 35 35 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 36 36 H 1.09002 * 110.67270 * 278.16471 * 8 7 6 37 37 H 1.08998 * 110.66667 * 41.29259 * 8 7 6 38 38 H 1.09002 * 110.72666 * 204.23420 * 9 8 7 39 39 H 1.08998 * 110.72369 * 80.94172 * 9 8 7 40 40 H 1.09001 * 110.30688 * 263.03605 * 10 9 8 41 41 H 1.08996 * 110.30747 * 140.87557 * 10 9 8 42 42 H 1.08994 * 109.91810 * 333.51090 * 11 7 6 43 43 H 1.08999 * 109.91451 * 94.60787 * 11 7 6 44 44 H 1.09000 * 109.47162 * 299.99966 * 15 12 3 45 45 H 1.09000 * 109.47109 * 59.99791 * 15 12 3 46 46 H 1.09000 * 109.47252 * 300.00292 * 16 15 12 47 47 H 1.09007 * 109.47178 * 59.99755 * 16 15 12 48 48 H 0.97001 * 120.00157 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 1.2639 5 6 0.8159 2.7383 1.6413 6 6 0.9618 3.4975 2.9615 7 7 -0.3269 4.1026 3.3236 8 6 -1.4127 3.0892 3.3119 9 6 -2.5121 3.7373 4.1905 10 6 -1.6973 4.4433 5.2986 11 6 -0.2918 4.6401 4.7010 12 16 2.4122 2.1201 -1.4286 13 8 1.6209 1.4495 -2.3999 14 8 2.2334 3.5055 -1.1676 15 6 4.1697 1.7388 -1.6661 16 6 4.6578 2.3739 -2.9695 17 6 6.1177 2.0566 -3.1671 18 1 6.6448 1.4617 -2.4358 19 6 6.7809 2.5265 -4.2808 20 7 8.0548 2.2491 -4.4535 21 14 5.8698 3.5572 -5.5446 22 1 5.9762 4.9932 -5.1818 23 1 6.4693 3.3398 -6.8857 24 1 4.4397 3.1578 -5.5710 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.4690 1.4182 2.0481 31 1 2.9080 2.8918 1.1513 32 1 0.5052 3.4287 0.8571 33 1 0.0661 1.9552 1.7539 34 1 1.2723 2.8067 3.7455 35 1 1.7116 4.2806 2.8493 36 1 -1.7769 2.9271 2.2974 37 1 -1.0701 2.1531 3.7528 38 1 -3.1639 2.9750 4.6174 39 1 -3.0887 4.4614 3.6151 40 1 -1.6456 3.8156 6.1883 41 1 -2.1440 5.4076 5.5405 42 1 0.4432 4.0955 5.2935 43 1 -0.0394 5.7002 4.6795 44 1 4.7442 2.1374 -0.8299 45 1 4.3034 0.6582 -1.7165 46 1 4.0833 1.9750 -3.8055 47 1 4.5240 3.4546 -2.9196 48 1 8.5214 2.5800 -5.2368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000188266145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:27 Heat of formation + Delta-G solvation = -78.579289 kcal Electronic energy + Delta-G solvation = -25622.885063 eV Core-core repulsion = 22032.575930 eV Total energy + Delta-G solvation = -3590.309133 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.31707 -37.26771 -36.77378 -35.49752 -33.94027 -33.78825 -31.47839 -31.10047 -29.52483 -28.89281 -25.96158 -25.04951 -22.76048 -22.39860 -21.19356 -21.04646 -20.53311 -18.58146 -17.73563 -16.96073 -16.51796 -16.27216 -15.77835 -15.56033 -15.12909 -14.73957 -14.36739 -14.30806 -13.95327 -13.68977 -13.59692 -13.26366 -13.00430 -12.83769 -12.75159 -12.33608 -12.12985 -11.89833 -11.78583 -11.71855 -11.68231 -11.62434 -11.43640 -11.36174 -11.32526 -11.24642 -11.17785 -10.91619 -10.77715 -10.48191 -10.42598 -10.14514 -9.73644 -9.43192 -8.90726 -8.66186 -8.65010 -6.16571 -4.17826 0.65042 2.90614 3.27040 3.34303 3.38767 3.72202 4.21685 4.32627 4.36130 4.39175 4.50411 4.56055 4.64737 4.86725 4.95574 5.02068 5.09581 5.14921 5.15437 5.18838 5.27032 5.32507 5.39901 5.45272 5.47290 5.47622 5.50829 5.52089 5.53840 5.62857 5.67768 5.72427 5.78640 5.86853 6.04795 6.11195 6.21029 6.27821 6.29240 6.62648 6.66304 6.81946 6.82421 6.94556 7.54926 8.36650 8.84400 9.43164 10.95781 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002849 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.854596 B = 9825.224710 C =10312.651971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.123 3.877 3 N -1.004 6.004 4 C 0.129 3.871 5 C -0.144 4.144 6 C 0.049 3.951 7 N -0.517 5.517 8 C 0.033 3.967 9 C -0.125 4.125 10 C -0.131 4.131 11 C 0.034 3.966 12 S 2.585 3.415 13 O -0.962 6.962 14 O -0.960 6.960 15 C -0.585 4.585 16 C -0.007 4.007 17 C -0.519 4.519 18 H 0.077 0.923 19 C 0.071 3.929 20 N -0.896 5.896 21 Si 0.869 3.131 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.262 1.262 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.082 0.918 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.070 0.930 34 H 0.035 0.965 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.044 0.956 38 H 0.069 0.931 39 H 0.074 0.926 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.043 0.957 43 H 0.079 0.921 44 H 0.124 0.876 45 H 0.124 0.876 46 H 0.032 0.968 47 H 0.028 0.972 48 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.409 -1.635 19.589 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.234 4.234 2 C -0.003 4.003 3 N -0.839 5.839 4 C 0.002 3.998 5 C -0.183 4.183 6 C -0.080 4.080 7 N -0.241 5.241 8 C -0.095 4.095 9 C -0.163 4.163 10 C -0.169 4.169 11 C -0.094 4.094 12 S 2.683 3.317 13 O -0.952 6.952 14 O -0.950 6.950 15 C -0.717 4.717 16 C -0.046 4.046 17 C -0.558 4.558 18 H 0.096 0.904 19 C -0.131 4.131 20 N -0.534 5.534 21 Si 0.695 3.305 22 H -0.196 1.196 23 H -0.207 1.207 24 H -0.186 1.186 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.077 0.923 28 H 0.100 0.900 29 H 0.092 0.908 30 H 0.093 0.907 31 H 0.101 0.899 32 H 0.102 0.898 33 H 0.089 0.911 34 H 0.053 0.947 35 H 0.099 0.901 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.088 0.912 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.090 0.910 42 H 0.062 0.938 43 H 0.097 0.903 44 H 0.142 0.858 45 H 0.142 0.858 46 H 0.050 0.950 47 H 0.046 0.954 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -18.958 -0.716 18.576 26.551 hybrid contribution 0.540 -0.460 0.172 0.730 sum -18.418 -1.177 18.747 26.307 Atomic orbital electron populations 1.22325 0.96218 1.02039 1.02793 1.21180 0.94650 0.81524 1.02930 1.57776 1.80434 1.23364 1.22346 1.21157 0.97359 0.95631 0.85606 1.22246 0.98383 1.00070 0.97642 1.22263 0.91657 0.97701 0.96333 1.64791 1.04650 1.31021 1.23667 1.23255 0.91977 0.93671 1.00582 1.22496 0.97393 0.99769 0.96685 1.22397 0.95288 1.01134 0.98130 1.22877 0.96698 1.01102 0.88676 1.05894 0.78783 0.74254 0.72797 1.93543 1.66986 1.75610 1.59108 1.93554 1.86100 1.31621 1.83716 1.30351 1.20969 1.11064 1.09354 1.19403 0.99860 0.95850 0.89498 1.20849 0.91789 1.34700 1.08482 0.90445 1.24990 0.94783 0.95650 0.97715 1.69881 1.09013 1.45523 1.28953 0.86926 0.80957 0.81357 0.81226 1.19628 1.20735 1.18604 0.91596 0.91893 0.92329 0.89997 0.90762 0.90732 0.89856 0.89846 0.91149 0.94682 0.90092 0.89857 0.93798 0.91185 0.90685 0.91662 0.91029 0.93819 0.90288 0.85776 0.85776 0.94998 0.95412 0.92377 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.79 10.02 37.15 0.37 -1.42 16 2 C 0.12 1.31 6.00 -4.05 -0.02 1.28 16 3 N -1.00 -12.77 2.74 -114.39 -0.31 -13.08 16 4 C 0.13 1.39 5.28 -4.04 -0.02 1.37 16 5 C -0.14 -1.56 4.98 -26.74 -0.13 -1.70 16 6 C 0.05 0.48 5.03 -3.83 -0.02 0.46 16 7 N -0.52 -5.17 5.40 -230.47 -1.24 -6.41 16 8 C 0.03 0.28 5.10 -1.90 -0.01 0.27 16 9 C -0.13 -0.90 7.06 -24.87 -0.18 -1.07 16 10 C -0.13 -0.89 6.93 -25.37 -0.18 -1.07 16 11 C 0.03 0.28 6.69 -2.76 -0.02 0.26 16 12 S 2.58 44.50 5.32 -107.50 -0.57 43.93 16 13 O -0.96 -18.84 16.75 -57.54 -0.96 -19.80 16 14 O -0.96 -18.75 16.75 -57.54 -0.96 -19.72 16 15 C -0.58 -10.81 6.12 37.15 0.23 -10.58 16 16 C -0.01 -0.16 4.05 -27.89 -0.11 -0.28 16 17 C -0.52 -14.58 9.66 -34.44 -0.33 -14.91 16 18 H 0.08 2.28 7.99 -52.49 -0.42 1.86 16 19 C 0.07 2.06 5.47 -17.82 -0.10 1.97 16 20 N -0.90 -27.14 13.96 55.43 0.77 -26.37 16 21 Si 0.87 21.62 27.47 -169.99 -4.67 16.95 16 22 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.85 7.11 56.52 0.40 -6.44 16 24 H -0.26 -6.31 6.54 56.52 0.37 -5.94 16 25 H 0.06 0.82 7.90 -51.93 -0.41 0.41 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.54 5.68 -51.93 -0.29 0.24 16 28 H 0.08 0.90 7.61 -51.93 -0.40 0.50 16 29 H 0.07 0.60 8.00 -51.93 -0.42 0.18 16 30 H 0.07 0.61 8.00 -51.93 -0.42 0.20 16 31 H 0.08 0.92 7.61 -51.93 -0.40 0.53 16 32 H 0.08 1.14 7.90 -51.93 -0.41 0.73 16 33 H 0.07 0.69 4.33 -51.93 -0.22 0.46 16 34 H 0.03 0.30 7.81 -51.93 -0.41 -0.11 16 35 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 36 H 0.08 0.75 7.67 -51.93 -0.40 0.36 16 37 H 0.04 0.35 8.00 -51.93 -0.42 -0.06 16 38 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.04 0.33 7.57 -51.93 -0.39 -0.06 16 43 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 44 H 0.12 2.08 8.14 -51.92 -0.42 1.66 16 45 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 46 H 0.03 0.77 7.20 -51.93 -0.37 0.39 16 47 H 0.03 0.66 7.57 -51.93 -0.39 0.26 16 48 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 LS Contribution 383.94 15.07 5.79 5.79 Total: -1.00 -34.03 383.94 -11.42 -45.45 By element: Atomic # 1 Polarization: 7.40 SS G_CDS: -8.73 Total: -1.33 kcal Atomic # 6 Polarization: -24.89 SS G_CDS: -0.52 Total: -25.41 kcal Atomic # 7 Polarization: -45.08 SS G_CDS: -0.78 Total: -45.86 kcal Atomic # 8 Polarization: -37.59 SS G_CDS: -1.93 Total: -39.52 kcal Atomic # 14 Polarization: 21.62 SS G_CDS: -4.67 Total: 16.95 kcal Atomic # 16 Polarization: 44.50 SS G_CDS: -0.57 Total: 43.93 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.03 -11.42 -45.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188266145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.128 kcal (2) G-P(sol) polarization free energy of solvation -34.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.452 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds