Wall clock time and date at job start Tue Mar 31 2020 12:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52988 * 1 3 3 N 1.46494 * 109.47593 * 2 1 4 4 C 1.46505 * 120.00080 * 84.99783 * 3 2 1 5 5 C 1.52997 * 109.47212 * 275.00347 * 4 3 2 6 6 C 1.52992 * 109.47482 * 179.97438 * 5 4 3 7 7 N 1.46901 * 109.47859 * 179.97438 * 6 5 4 8 8 C 1.48533 * 110.99670 * 52.60024 * 7 6 5 9 9 C 1.54936 * 103.22827 * 159.72645 * 8 7 6 10 10 C 1.54602 * 102.91755 * 322.58844 * 9 8 7 11 11 C 1.47895 * 111.00585 * 169.99973 * 7 6 5 12 12 S 1.65596 * 120.00265 * 265.00204 * 3 2 1 13 13 O 1.42101 * 104.27728 * 26.06466 * 12 3 2 14 14 O 1.42101 * 104.28108 * 153.92463 * 12 3 2 15 15 C 1.81403 * 104.45087 * 269.99629 * 12 3 2 16 16 C 1.52992 * 109.47390 * 179.97438 * 15 12 3 17 17 C 1.50699 * 109.47248 * 180.02562 * 16 15 12 18 18 H 1.07998 * 119.99937 * 359.97438 * 17 16 15 19 19 C 1.37878 * 120.00222 * 180.02562 * 17 16 15 20 20 N 1.31515 * 120.00193 * 180.02562 * 19 17 16 21 21 Si 1.86800 * 120.00023 * 0.02562 * 19 17 16 22 22 H 1.48503 * 109.47222 * 89.99955 * 21 19 17 23 23 H 1.48499 * 109.47427 * 209.99949 * 21 19 17 24 24 H 1.48508 * 109.47062 * 330.00136 * 21 19 17 25 25 H 1.09004 * 109.47160 * 59.99635 * 1 2 3 26 26 H 1.09001 * 109.47749 * 180.02562 * 1 2 3 27 27 H 1.09000 * 109.47346 * 299.99878 * 1 2 3 28 28 H 1.08998 * 109.47534 * 239.99613 * 2 1 3 29 29 H 1.09004 * 109.47160 * 120.00365 * 2 1 3 30 30 H 1.09002 * 109.47068 * 35.00407 * 4 3 2 31 31 H 1.09001 * 109.47372 * 155.00495 * 4 3 2 32 32 H 1.09002 * 109.47153 * 300.00008 * 5 4 3 33 33 H 1.08998 * 109.47533 * 59.99637 * 5 4 3 34 34 H 1.09002 * 109.47103 * 300.00247 * 6 5 4 35 35 H 1.09001 * 109.47066 * 60.00169 * 6 5 4 36 36 H 1.09002 * 110.67270 * 278.16471 * 8 7 6 37 37 H 1.08998 * 110.66667 * 41.29259 * 8 7 6 38 38 H 1.09002 * 110.72666 * 204.23420 * 9 8 7 39 39 H 1.08998 * 110.72369 * 80.94172 * 9 8 7 40 40 H 1.09001 * 110.30688 * 263.03605 * 10 9 8 41 41 H 1.08996 * 110.30747 * 140.87557 * 10 9 8 42 42 H 1.08994 * 109.91810 * 333.51090 * 11 7 6 43 43 H 1.08999 * 109.91451 * 94.60787 * 11 7 6 44 44 H 1.09000 * 109.47162 * 299.99966 * 15 12 3 45 45 H 1.09000 * 109.47109 * 59.99791 * 15 12 3 46 46 H 1.09000 * 109.47252 * 300.00292 * 16 15 12 47 47 H 1.09007 * 109.47178 * 59.99755 * 16 15 12 48 48 H 0.97001 * 120.00157 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3811 0.0000 4 6 2.1582 2.1086 1.2639 5 6 0.8159 2.7383 1.6413 6 6 0.9618 3.4975 2.9615 7 7 -0.3269 4.1026 3.3236 8 6 -1.4127 3.0892 3.3119 9 6 -2.5121 3.7373 4.1905 10 6 -1.6973 4.4433 5.2986 11 6 -0.2918 4.6401 4.7010 12 16 2.4122 2.1201 -1.4286 13 8 1.6209 1.4495 -2.3999 14 8 2.2334 3.5055 -1.1676 15 6 4.1697 1.7388 -1.6661 16 6 4.6578 2.3739 -2.9695 17 6 6.1177 2.0566 -3.1671 18 1 6.6448 1.4617 -2.4358 19 6 6.7809 2.5265 -4.2808 20 7 8.0548 2.2491 -4.4535 21 14 5.8698 3.5572 -5.5446 22 1 5.9762 4.9932 -5.1818 23 1 6.4693 3.3398 -6.8857 24 1 4.4397 3.1578 -5.5710 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5139 0.8900 30 1 2.4690 1.4182 2.0481 31 1 2.9080 2.8918 1.1513 32 1 0.5052 3.4287 0.8571 33 1 0.0661 1.9552 1.7539 34 1 1.2723 2.8067 3.7455 35 1 1.7116 4.2806 2.8493 36 1 -1.7769 2.9271 2.2974 37 1 -1.0701 2.1531 3.7528 38 1 -3.1639 2.9750 4.6174 39 1 -3.0887 4.4614 3.6151 40 1 -1.6456 3.8156 6.1883 41 1 -2.1440 5.4076 5.5405 42 1 0.4432 4.0955 5.2935 43 1 -0.0394 5.7002 4.6795 44 1 4.7442 2.1374 -0.8299 45 1 4.3034 0.6582 -1.7165 46 1 4.0833 1.9750 -3.8055 47 1 4.5240 3.4546 -2.9196 48 1 8.5214 2.5800 -5.2368 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000188266145.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:16:26 Heat of formation + Delta-G solvation = -103.138509 kcal Electronic energy + Delta-G solvation = -25623.950031 eV Core-core repulsion = 22032.575930 eV Total energy + Delta-G solvation = -3591.374101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -39.98447 -38.23533 -38.18106 -36.96897 -35.90517 -34.53668 -33.48421 -31.87645 -30.28377 -29.58088 -27.87382 -25.84652 -23.72908 -23.21307 -22.94435 -21.68748 -21.23431 -19.90259 -19.29952 -18.59591 -17.49683 -17.08822 -16.90091 -16.71697 -16.42837 -16.01229 -15.77368 -15.19588 -15.07802 -14.84587 -14.79316 -14.53664 -13.97544 -13.82831 -13.73196 -13.63520 -13.21106 -13.14565 -13.07799 -13.06909 -12.97570 -12.94169 -12.55211 -12.32134 -12.26416 -12.20933 -12.08264 -12.04402 -11.95613 -11.77399 -11.66427 -11.41487 -11.28048 -11.23826 -10.85835 -10.00033 -9.32231 -8.38055 -6.43756 -0.73467 1.30721 1.32486 1.42738 1.70756 2.28209 2.82158 2.95649 3.05134 3.18293 3.61591 3.74309 3.81526 3.92992 4.03295 4.08169 4.10954 4.26751 4.30116 4.36043 4.37934 4.46608 4.52770 4.55170 4.65124 4.69956 4.72200 4.75655 4.81809 4.92839 4.93473 4.98900 5.05073 5.07910 5.08285 5.16769 5.24267 5.26568 5.31148 5.35617 5.45741 5.47836 5.73025 6.00183 6.14420 6.15333 6.61980 7.20665 8.77416 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.022184 B = 0.002849 C = 0.002714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.854596 B = 9825.224710 C =10312.651971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.111 3.889 3 N -0.993 5.993 4 C 0.120 3.880 5 C -0.138 4.138 6 C 0.052 3.948 7 N -0.542 5.542 8 C 0.031 3.969 9 C -0.124 4.124 10 C -0.128 4.128 11 C 0.032 3.968 12 S 2.608 3.392 13 O -0.987 6.987 14 O -0.986 6.986 15 C -0.590 4.590 16 C -0.017 4.017 17 C -0.527 4.527 18 H 0.050 0.950 19 C 0.014 3.986 20 N -0.939 5.939 21 Si 0.924 3.076 22 H -0.260 1.260 23 H -0.272 1.272 24 H -0.251 1.251 25 H 0.036 0.964 26 H 0.084 0.916 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.112 0.888 30 H 0.113 0.887 31 H 0.078 0.922 32 H 0.048 0.952 33 H 0.082 0.918 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.054 0.946 38 H 0.086 0.914 39 H 0.066 0.934 40 H 0.078 0.922 41 H 0.075 0.925 42 H 0.051 0.949 43 H 0.073 0.927 44 H 0.138 0.862 45 H 0.138 0.862 46 H 0.030 0.970 47 H 0.029 0.971 48 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.012 -2.306 21.423 29.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.013 4.013 3 N -0.831 5.831 4 C -0.005 4.005 5 C -0.177 4.177 6 C -0.076 4.076 7 N -0.267 5.267 8 C -0.096 4.096 9 C -0.162 4.162 10 C -0.166 4.166 11 C -0.096 4.096 12 S 2.705 3.295 13 O -0.977 6.977 14 O -0.976 6.976 15 C -0.721 4.721 16 C -0.056 4.056 17 C -0.566 4.566 18 H 0.068 0.932 19 C -0.185 4.185 20 N -0.578 5.578 21 Si 0.747 3.253 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.175 1.175 25 H 0.055 0.945 26 H 0.103 0.897 27 H 0.088 0.912 28 H 0.095 0.905 29 H 0.130 0.870 30 H 0.131 0.869 31 H 0.096 0.904 32 H 0.067 0.933 33 H 0.100 0.900 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.072 0.928 38 H 0.104 0.896 39 H 0.085 0.915 40 H 0.097 0.903 41 H 0.094 0.906 42 H 0.069 0.931 43 H 0.091 0.909 44 H 0.157 0.843 45 H 0.157 0.843 46 H 0.048 0.952 47 H 0.047 0.953 48 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -20.555 -1.386 20.406 28.997 hybrid contribution 1.026 -0.315 -0.282 1.110 sum -19.529 -1.701 20.124 28.094 Atomic orbital electron populations 1.22328 0.95906 1.03224 1.01882 1.21526 0.94988 0.80168 1.04610 1.57435 1.79782 1.24407 1.21445 1.21451 0.97309 0.96383 0.85364 1.22163 0.98652 0.99749 0.97178 1.22201 0.91591 0.97689 0.96154 1.64753 1.05037 1.31904 1.24962 1.23270 0.92032 0.93926 1.00387 1.22503 0.97189 0.99984 0.96540 1.22398 0.94251 1.01649 0.98302 1.22921 0.97878 1.00782 0.88024 1.04950 0.77620 0.73553 0.73415 1.93505 1.67156 1.75992 1.61093 1.93518 1.86070 1.33579 1.84404 1.30354 1.22929 1.11715 1.07104 1.19359 0.97371 0.96398 0.92430 1.21165 0.93927 1.33778 1.07736 0.93172 1.25868 0.95566 0.97054 1.00000 1.70003 1.10628 1.47171 1.30027 0.86041 0.80227 0.80109 0.78968 1.18502 1.19712 1.17495 0.94511 0.89689 0.91228 0.90457 0.86953 0.86880 0.90383 0.93340 0.89961 0.92708 0.91015 0.90947 0.92805 0.89587 0.91503 0.90328 0.90600 0.93062 0.90888 0.84328 0.84329 0.95175 0.95306 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.02 71.98 0.72 -2.45 16 2 C 0.11 2.06 6.00 86.38 0.52 2.58 16 3 N -0.99 -23.30 2.74 -515.81 -1.41 -24.71 16 4 C 0.12 2.30 5.28 86.38 0.46 2.76 16 5 C -0.14 -2.78 4.98 30.59 0.15 -2.63 16 6 C 0.05 0.93 5.03 86.30 0.43 1.36 16 7 N -0.54 -10.16 5.40 -883.07 -4.76 -14.93 16 8 C 0.03 0.48 5.10 86.65 0.44 0.93 16 9 C -0.12 -1.55 7.06 31.80 0.22 -1.32 16 10 C -0.13 -1.47 6.93 31.47 0.22 -1.25 16 11 C 0.03 0.47 6.69 86.45 0.58 1.05 16 12 S 2.61 88.03 5.32 -56.49 -0.30 87.73 16 13 O -0.99 -38.30 16.75 -127.65 -2.14 -40.43 16 14 O -0.99 -38.42 16.75 -127.65 -2.14 -40.55 16 15 C -0.59 -21.42 6.12 71.98 0.44 -20.98 16 16 C -0.02 -0.79 4.05 29.84 0.12 -0.67 16 17 C -0.53 -30.06 9.66 25.60 0.25 -29.82 16 18 H 0.05 3.04 7.99 -2.91 -0.02 3.02 16 19 C 0.01 0.81 5.47 84.65 0.46 1.27 16 20 N -0.94 -57.93 13.96 21.45 0.30 -57.63 16 21 Si 0.92 44.36 27.47 68.60 1.88 46.25 16 22 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 23 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 24 H -0.25 -11.54 6.54 99.48 0.65 -10.89 16 25 H 0.04 0.88 7.90 -2.39 -0.02 0.86 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.15 16 27 H 0.07 1.09 5.68 -2.39 -0.01 1.07 16 28 H 0.08 1.53 7.61 -2.39 -0.02 1.51 16 29 H 0.11 1.28 8.00 -2.39 -0.02 1.26 16 30 H 0.11 1.36 8.00 -2.39 -0.02 1.34 16 31 H 0.08 1.60 7.61 -2.39 -0.02 1.59 16 32 H 0.05 1.32 7.90 -2.39 -0.02 1.31 16 33 H 0.08 1.43 4.33 -2.39 -0.01 1.42 16 34 H 0.05 0.75 7.81 -2.39 -0.02 0.73 16 35 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.25 7.67 -2.39 -0.02 1.23 16 37 H 0.05 0.72 8.00 -2.39 -0.02 0.70 16 38 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 39 H 0.07 0.93 8.14 -2.39 -0.02 0.91 16 40 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 41 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.05 0.67 7.57 -2.39 -0.02 0.65 16 43 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 44 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 45 H 0.14 4.54 8.14 -2.39 -0.02 4.52 16 46 H 0.03 1.44 7.20 -2.39 -0.02 1.42 16 47 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 48 H 0.27 15.52 8.31 -92.71 -0.77 14.74 16 Total: -1.00 -74.78 383.94 -2.70 -77.48 By element: Atomic # 1 Polarization: 15.14 SS G_CDS: 0.85 Total: 15.99 kcal Atomic # 6 Polarization: -54.20 SS G_CDS: 5.02 Total: -49.18 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -5.88 Total: -97.27 kcal Atomic # 8 Polarization: -76.71 SS G_CDS: -4.28 Total: -80.99 kcal Atomic # 14 Polarization: 44.36 SS G_CDS: 1.88 Total: 46.25 kcal Atomic # 16 Polarization: 88.03 SS G_CDS: -0.30 Total: 87.73 kcal Total: -74.78 -2.70 -77.48 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000188266145.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.654 kcal (2) G-P(sol) polarization free energy of solvation -74.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.434 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.139 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds