Wall clock time and date at job start Tue Mar 31 2020 12:25:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46897 * 1 3 3 C 1.46901 * 111.00161 * 2 1 4 4 C 1.46896 * 110.99945 * 123.95112 * 2 1 3 5 5 C 1.52996 * 112.85321 * 296.15228 * 4 2 1 6 6 N 1.46502 * 109.47498 * 163.21913 * 5 4 2 7 7 C 1.46495 * 120.00050 * 277.53820 * 6 5 4 8 8 S 1.65606 * 120.00056 * 97.53936 * 6 5 4 9 9 O 1.42104 * 104.27585 * 341.78854 * 8 6 5 10 10 O 1.42095 * 104.27477 * 213.92983 * 8 6 5 11 11 C 1.81401 * 104.44899 * 97.85637 * 8 6 5 12 12 C 1.52997 * 109.47041 * 179.97438 * 11 8 6 13 13 C 1.52998 * 109.46950 * 180.02562 * 12 11 8 14 14 C 1.50706 * 109.47291 * 180.02562 * 13 12 11 15 15 H 1.08002 * 119.99727 * 0.02562 * 14 13 12 16 16 C 1.37869 * 120.00250 * 180.02562 * 14 13 12 17 17 N 1.31511 * 120.00205 * 0.02562 * 16 14 13 18 18 Si 1.86809 * 119.99983 * 179.97438 * 16 14 13 19 19 H 1.48494 * 109.46721 * 90.00013 * 18 16 14 20 20 H 1.48497 * 109.47003 * 210.00344 * 18 16 14 21 21 H 1.48500 * 109.46975 * 330.00222 * 18 16 14 22 22 C 1.53784 * 113.61560 * 67.34773 * 4 2 1 23 23 C 1.53952 * 87.02061 * 89.22923 * 22 4 2 24 24 C 1.53779 * 87.11385 * 25.36453 * 23 22 4 25 25 H 1.08999 * 109.47488 * 302.04804 * 1 2 3 26 26 H 1.08998 * 109.47186 * 62.05162 * 1 2 3 27 27 H 1.08997 * 109.47190 * 182.05207 * 1 2 3 28 28 H 1.08997 * 109.47330 * 183.95371 * 3 2 1 29 29 H 1.09004 * 109.47020 * 303.95671 * 3 2 1 30 30 H 1.08999 * 109.46904 * 63.95028 * 3 2 1 31 31 H 1.09001 * 109.47115 * 43.21712 * 5 4 2 32 32 H 1.09012 * 109.47196 * 283.21786 * 5 4 2 33 33 H 1.08994 * 109.47433 * 264.63073 * 7 6 5 34 34 H 1.09002 * 109.46835 * 24.63054 * 7 6 5 35 35 H 1.08999 * 109.46848 * 144.62698 * 7 6 5 36 36 H 1.08998 * 109.47311 * 299.99961 * 11 8 6 37 37 H 1.09000 * 109.46818 * 59.99799 * 11 8 6 38 38 H 1.08998 * 109.47138 * 300.00191 * 12 11 8 39 39 H 1.08998 * 109.46894 * 60.00421 * 12 11 8 40 40 H 1.09000 * 109.47836 * 300.00172 * 13 12 11 41 41 H 1.09003 * 109.47434 * 60.00443 * 13 12 11 42 42 H 0.97002 * 120.00415 * 180.02562 * 17 16 14 43 43 H 1.08999 * 113.61403 * 203.75193 * 22 4 2 44 44 H 1.09004 * 113.61126 * 334.64654 * 22 4 2 45 45 H 1.09001 * 113.53600 * 270.81239 * 23 22 4 46 46 H 1.09002 * 113.74217 * 139.94650 * 23 22 4 47 47 H 1.08994 * 113.61567 * 220.09414 * 24 23 22 48 48 H 1.08996 * 113.68865 * 89.19565 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7659 1.1376 5 6 1.6282 -0.1503 2.4893 6 7 1.8248 -1.1437 3.5479 7 6 0.7863 -2.1408 3.8188 8 16 3.2210 -1.1393 4.4386 9 8 4.1326 -0.3791 3.6573 10 8 3.4626 -2.5114 4.7180 11 6 2.7864 -0.2474 5.9572 12 6 4.0089 -0.1760 6.8743 13 6 3.6422 0.5758 8.1554 14 6 4.8465 0.6466 9.0586 15 1 5.7803 0.2005 8.7495 16 6 4.7564 1.2810 10.2793 17 7 3.6193 1.8239 10.6559 18 14 6.2491 1.3682 11.3991 19 1 7.0236 2.5984 11.0965 20 1 5.8041 1.3991 12.8155 21 1 7.1060 0.1762 11.1754 22 6 1.7095 -2.2744 1.0498 23 6 3.0391 -2.4002 0.2839 24 6 3.4866 -1.1182 1.0059 25 1 -0.3634 0.5453 0.8710 26 1 -0.3633 0.4816 -0.9078 27 1 -0.3633 -1.0270 0.0368 28 1 3.0828 1.3432 -0.0709 29 1 1.5898 1.9163 -0.8524 30 1 1.7043 1.8723 0.9233 31 1 0.5843 0.1629 2.4743 32 1 2.2643 0.7143 2.6796 33 1 0.1500 -1.7912 4.6317 34 1 0.1830 -2.2894 2.9232 35 1 1.2534 -3.0838 4.1028 36 1 2.4613 0.7621 5.7053 37 1 1.9792 -0.7721 6.4683 38 1 4.3336 -1.1856 7.1262 39 1 4.8163 0.3485 6.3633 40 1 3.3172 1.5854 7.9040 41 1 2.8349 0.0509 8.6663 42 1 3.5559 2.2705 11.5147 43 1 1.7136 -2.7766 2.0172 44 1 0.8335 -2.5185 0.4488 45 1 2.9335 -2.2799 -0.7942 46 1 3.6210 -3.2806 0.5566 47 1 4.0431 -0.4303 0.3695 48 1 3.9777 -1.3024 1.9613 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000189140739.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:47 Heat of formation + Delta-G solvation = -36.924302 kcal Electronic energy + Delta-G solvation = -26480.164762 eV Core-core repulsion = 22891.661925 eV Total energy + Delta-G solvation = -3588.502838 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47564 -37.01639 -36.02813 -35.69100 -34.93933 -34.69452 -32.21273 -29.04805 -28.15786 -27.83873 -26.08726 -25.04978 -24.25427 -23.62030 -22.10735 -20.61340 -19.07043 -18.31012 -17.63556 -16.89567 -16.45850 -16.37468 -15.77805 -15.33653 -15.06703 -14.80590 -14.49135 -14.39872 -13.98265 -13.86163 -13.64906 -13.51883 -12.76744 -12.60598 -12.46808 -12.26832 -12.20703 -12.08561 -12.00684 -11.87653 -11.77398 -11.64041 -11.48177 -11.26879 -11.13478 -10.94306 -10.91146 -10.73052 -10.48731 -10.38838 -10.09606 -9.98662 -9.65333 -9.34607 -9.11805 -8.43026 -8.31886 -6.07825 -4.11117 0.37444 2.65782 3.29079 3.35189 3.39316 3.62884 3.91946 4.21669 4.31695 4.40396 4.52184 4.66960 4.73879 4.88115 4.92068 5.00864 5.10968 5.14278 5.18692 5.25441 5.28282 5.28702 5.37320 5.40429 5.45887 5.57094 5.61973 5.69114 5.74645 5.80632 5.85760 5.89280 5.91962 6.06546 6.19439 6.26350 6.33277 6.40759 6.41928 6.77591 6.83502 6.95622 7.53951 7.63530 7.89924 8.30194 8.95058 9.53798 11.03403 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.025232 B = 0.002933 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.453300 B = 9543.203186 C = 9711.997148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 N -0.516 5.516 3 C 0.019 3.981 4 C 0.064 3.936 5 C 0.107 3.893 6 N -1.000 6.000 7 C 0.078 3.922 8 S 2.592 3.408 9 O -0.951 6.951 10 O -0.958 6.958 11 C -0.609 4.609 12 C -0.106 4.106 13 C 0.031 3.969 14 C -0.527 4.527 15 H 0.058 0.942 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.894 3.106 19 H -0.279 1.279 20 H -0.286 1.286 21 H -0.272 1.272 22 C -0.135 4.135 23 C -0.134 4.134 24 C -0.133 4.133 25 H 0.028 0.972 26 H 0.068 0.932 27 H 0.069 0.931 28 H 0.073 0.927 29 H 0.068 0.932 30 H 0.030 0.970 31 H 0.075 0.925 32 H 0.089 0.911 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.083 0.917 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.020 0.980 41 H 0.020 0.980 42 H 0.262 0.738 43 H 0.097 0.903 44 H 0.068 0.932 45 H 0.082 0.918 46 H 0.061 0.939 47 H 0.070 0.930 48 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.367 -5.147 -21.652 24.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.239 5.239 3 C -0.129 4.129 4 C -0.028 4.028 5 C -0.021 4.021 6 N -0.837 5.837 7 C -0.067 4.067 8 S 2.689 3.311 9 O -0.941 6.941 10 O -0.948 6.948 11 C -0.741 4.741 12 C -0.145 4.145 13 C -0.008 4.008 14 C -0.565 4.565 15 H 0.077 0.923 16 C -0.144 4.144 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.205 1.205 20 H -0.211 1.211 21 H -0.197 1.197 22 C -0.173 4.173 23 C -0.171 4.171 24 C -0.171 4.171 25 H 0.047 0.953 26 H 0.087 0.913 27 H 0.088 0.912 28 H 0.092 0.908 29 H 0.086 0.914 30 H 0.048 0.952 31 H 0.093 0.907 32 H 0.107 0.893 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.101 0.899 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.038 0.962 41 H 0.039 0.961 42 H 0.071 0.929 43 H 0.115 0.885 44 H 0.086 0.914 45 H 0.100 0.900 46 H 0.080 0.920 47 H 0.089 0.911 48 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -8.516 -5.692 -22.256 24.500 hybrid contribution -0.222 1.044 1.809 2.101 sum -8.739 -4.647 -20.446 22.716 Atomic orbital electron populations 1.22415 0.87570 1.02149 1.00717 1.62098 1.07606 1.13863 1.40309 1.22418 1.01543 0.88403 1.00558 1.22670 0.97670 0.94288 0.88140 1.21677 1.02205 0.91097 0.87078 1.57455 1.37167 1.41884 1.47164 1.21711 0.91265 0.91838 1.01926 1.05655 0.73508 0.75528 0.76371 1.93545 1.60569 1.73470 1.66542 1.93563 1.83327 1.31995 1.85895 1.30573 1.10412 1.14254 1.18833 1.21506 0.92388 1.02543 0.98075 1.19063 0.97211 0.95067 0.89412 1.21251 0.97104 1.36064 1.02079 0.92344 1.25020 0.96088 0.95293 0.97959 1.69955 1.24846 1.37036 1.21609 0.86551 0.82844 0.78604 0.79810 1.20538 1.21144 1.19699 1.23305 0.98362 0.94175 1.01438 1.22750 0.96746 0.97868 0.99743 1.23273 0.94002 0.97531 1.02307 0.95340 0.91322 0.91229 0.90796 0.91354 0.95181 0.90716 0.89305 0.92634 0.90244 0.89880 0.85540 0.85530 0.91605 0.91561 0.96156 0.96120 0.92874 0.88450 0.91381 0.89978 0.91978 0.91090 0.88211 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.15 60.06 0.55 0.69 16 2 N -0.52 -4.78 4.81 -234.46 -1.13 -5.91 16 3 C 0.02 0.16 9.20 60.07 0.55 0.71 16 4 C 0.06 0.67 0.42 -130.79 -0.05 0.61 16 5 C 0.11 1.12 4.20 -4.04 -0.02 1.10 16 6 N -1.00 -11.16 2.38 -121.76 -0.29 -11.45 16 7 C 0.08 0.69 8.70 59.84 0.52 1.21 16 8 S 2.59 38.14 4.83 -107.50 -0.52 37.62 16 9 O -0.95 -15.74 13.81 -57.54 -0.79 -16.54 16 10 O -0.96 -16.50 16.83 -57.54 -0.97 -17.46 16 11 C -0.61 -9.49 6.18 37.16 0.23 -9.26 16 12 C -0.11 -2.15 5.16 -26.73 -0.14 -2.29 16 13 C 0.03 0.78 4.97 -27.88 -0.14 0.64 16 14 C -0.53 -14.85 9.11 -34.44 -0.31 -15.17 16 15 H 0.06 1.60 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.90 -26.56 13.29 55.43 0.74 -25.83 16 18 Si 0.89 21.55 29.54 -169.99 -5.02 16.53 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.79 7.11 56.52 0.40 -6.39 16 21 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 22 C -0.14 -1.35 5.90 -25.83 -0.15 -1.50 16 23 C -0.13 -1.45 8.00 -25.83 -0.21 -1.65 16 24 C -0.13 -1.65 6.86 -25.92 -0.18 -1.83 16 25 H 0.03 0.20 6.66 -51.93 -0.35 -0.15 16 26 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.07 0.49 6.57 -51.93 -0.34 0.14 16 28 H 0.07 0.68 6.96 -51.93 -0.36 0.32 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.03 0.25 7.00 -51.93 -0.36 -0.11 16 31 H 0.07 0.65 6.33 -51.93 -0.33 0.32 16 32 H 0.09 0.99 6.78 -51.92 -0.35 0.63 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.56 6.50 -51.93 -0.34 0.22 16 35 H 0.08 0.79 7.10 -51.93 -0.37 0.42 16 36 H 0.13 1.78 8.14 -51.93 -0.42 1.36 16 37 H 0.13 1.77 8.14 -51.92 -0.42 1.35 16 38 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.07 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 42 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 43 H 0.10 1.00 4.70 -51.93 -0.24 0.75 16 44 H 0.07 0.60 6.74 -51.93 -0.35 0.25 16 45 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 47 H 0.07 0.87 7.03 -51.93 -0.37 0.50 16 48 H 0.10 1.45 4.45 -51.93 -0.23 1.22 16 LS Contribution 372.53 15.07 5.61 5.61 Total: -1.00 -33.12 372.53 -9.99 -43.12 By element: Atomic # 1 Polarization: 7.67 SS G_CDS: -8.18 Total: -0.51 kcal Atomic # 6 Polarization: -25.74 SS G_CDS: 0.56 Total: -25.18 kcal Atomic # 7 Polarization: -42.50 SS G_CDS: -0.68 Total: -43.19 kcal Atomic # 8 Polarization: -32.24 SS G_CDS: -1.76 Total: -34.00 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.53 kcal Atomic # 16 Polarization: 38.14 SS G_CDS: -0.52 Total: 37.62 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.12 -9.99 -43.12 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000189140739.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.194 kcal (2) G-P(sol) polarization free energy of solvation -33.123 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.995 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.924 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds