Wall clock time and date at job start Tue Mar 31 2020 11:58:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46871 * 2 1 4 4 C 1.46902 * 111.00213 * 314.30189 * 3 2 1 5 5 C 1.53693 * 109.25785 * 172.60926 * 4 3 2 6 6 H 1.09001 * 109.79768 * 294.42563 * 5 4 3 7 7 C 1.52999 * 109.70301 * 173.68942 * 5 4 3 8 8 N 1.47078 * 108.27492 * 54.08186 * 5 4 3 9 9 S 1.65603 * 120.88126 * 128.75450 * 8 5 4 10 10 O 1.42101 * 104.27988 * 192.30848 * 9 8 5 11 11 O 1.42102 * 104.27765 * 320.17103 * 9 8 5 12 12 C 1.81408 * 104.44631 * 76.23977 * 9 8 5 13 13 C 1.53000 * 109.47239 * 180.02562 * 12 9 8 14 14 C 1.52993 * 109.47265 * 179.97438 * 13 12 9 15 15 C 1.50702 * 109.47038 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00466 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99998 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47075 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.46824 * 240.00075 * 19 17 15 23 23 C 1.47077 * 118.23992 * 308.48555 * 8 5 4 24 24 C 1.46905 * 110.99637 * 190.00443 * 3 2 1 25 25 H 1.08994 * 109.49339 * 67.29463 * 24 3 2 26 26 C 1.52996 * 109.51316 * 307.22556 * 24 3 2 27 27 H 1.09002 * 109.47474 * 59.99823 * 1 2 3 28 28 H 1.08994 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46678 * 299.99643 * 1 2 3 30 30 H 1.08999 * 109.46678 * 240.00357 * 2 1 3 31 31 H 1.08993 * 109.46920 * 120.00334 * 2 1 3 32 32 H 1.08999 * 109.49107 * 292.70771 * 4 3 2 33 33 H 1.09000 * 109.49211 * 52.76384 * 4 3 2 34 34 H 1.08991 * 109.46844 * 309.10902 * 7 5 4 35 35 H 1.08998 * 109.46953 * 69.11214 * 7 5 4 36 36 H 1.08995 * 109.46689 * 189.10930 * 7 5 4 37 37 H 1.08998 * 109.47132 * 300.00101 * 12 9 8 38 38 H 1.08998 * 109.47429 * 60.00157 * 12 9 8 39 39 H 1.09003 * 109.47265 * 300.00275 * 13 12 9 40 40 H 1.09004 * 109.47333 * 59.99354 * 13 12 9 41 41 H 1.08998 * 109.47325 * 299.99955 * 14 13 12 42 42 H 1.08998 * 109.47211 * 59.99996 * 14 13 12 43 43 H 0.97000 * 120.00675 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.63046 * 171.16688 * 23 8 5 45 45 H 1.08998 * 109.63067 * 291.74663 * 23 8 5 46 46 H 1.08997 * 109.47622 * 300.12586 * 26 24 3 47 47 H 1.09000 * 109.47274 * 60.12442 * 26 24 3 48 48 H 1.08995 * 109.47304 * 180.12230 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2921 2.2007 -0.9815 5 6 1.7023 3.6731 -0.8207 6 1 1.3724 4.0445 0.1495 7 6 1.0724 4.5089 -1.9368 8 7 3.1682 3.7557 -0.9088 9 16 3.8987 4.8248 -1.9411 10 8 5.2595 4.4162 -1.9635 11 8 3.1005 4.7789 -3.1158 12 6 3.7307 6.4336 -1.1198 13 6 4.3745 7.5181 -1.9859 14 6 4.2322 8.8750 -1.2936 15 6 4.8658 9.9433 -2.1470 16 1 5.3245 9.6807 -3.0889 17 6 4.8608 11.2559 -1.7250 18 7 4.3036 11.5756 -0.5775 19 14 5.6468 12.5800 -2.7826 20 1 6.2015 11.9647 -4.0150 21 1 4.6237 13.5914 -3.1510 22 1 6.7405 13.2364 -2.0222 23 6 3.9680 2.8677 -0.0515 24 6 3.4685 1.4311 -0.2383 25 1 3.6805 1.1017 -1.2554 26 6 4.1794 0.5102 0.7554 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5345 1.8605 -1.9883 33 1 0.2197 2.1023 -0.8126 34 1 1.2838 4.0460 -2.9007 35 1 -0.0060 4.5608 -1.7873 36 1 1.4909 5.5151 -1.9173 37 1 2.6740 6.6611 -0.9791 38 1 4.2274 6.4002 -0.1501 39 1 5.4312 7.2908 -2.1270 40 1 3.8775 7.5514 -2.9555 41 1 3.1755 9.1021 -1.1529 42 1 4.7289 8.8420 -0.3239 43 1 4.2998 12.4990 -0.2807 44 1 5.0179 2.9305 -0.3377 45 1 3.8516 3.1632 0.9912 46 1 3.9664 0.8393 1.7724 47 1 3.8239 -0.5116 0.6222 48 1 5.2544 0.5466 0.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330541545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:23 Heat of formation + Delta-G solvation = -66.325905 kcal Electronic energy + Delta-G solvation = -26287.465837 eV Core-core repulsion = 22697.688050 eV Total energy + Delta-G solvation = -3589.777787 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.78899 -37.21355 -35.96776 -35.54464 -34.68252 -33.67580 -32.19079 -30.82877 -29.31338 -27.82226 -26.35351 -25.39702 -23.69937 -22.18059 -22.08360 -20.49599 -20.21253 -18.67454 -17.10402 -16.75987 -16.49911 -16.14072 -15.73200 -15.39790 -15.25488 -15.01707 -14.58199 -14.44227 -14.16614 -13.74572 -13.23393 -12.98902 -12.74149 -12.58795 -12.49724 -12.28327 -12.20953 -12.17306 -12.00985 -11.89630 -11.77166 -11.61473 -11.42330 -11.30105 -11.20584 -11.05945 -10.93369 -10.92086 -10.79503 -10.39894 -10.33861 -9.94909 -9.50576 -9.22382 -8.96944 -8.49473 -8.41155 -6.05684 -4.08721 0.45274 2.72002 3.29323 3.36818 3.41792 3.53782 3.99877 4.32083 4.34214 4.42698 4.59411 4.68489 4.73708 4.86553 4.98589 5.00279 5.08561 5.12831 5.17716 5.19213 5.28817 5.30710 5.32165 5.47278 5.49712 5.54721 5.57603 5.61012 5.70933 5.72902 5.82044 5.84317 5.92260 5.96858 6.02822 6.25419 6.37936 6.48001 6.53730 6.81831 6.82714 6.87419 7.57417 7.67120 7.92476 8.32914 8.97765 9.56037 11.05586 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.002844 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.748535 B = 9843.444143 C =10099.716970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.050 3.950 3 N -0.533 5.533 4 C 0.043 3.957 5 C 0.157 3.843 6 H 0.083 0.917 7 C -0.185 4.185 8 N -1.004 6.004 9 S 2.596 3.404 10 O -0.965 6.965 11 O -0.957 6.957 12 C -0.610 4.610 13 C -0.105 4.105 14 C 0.031 3.969 15 C -0.525 4.525 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.895 5.895 19 Si 0.894 3.106 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C 0.125 3.875 24 C 0.071 3.929 25 H 0.046 0.954 26 C -0.147 4.147 27 H 0.059 0.941 28 H 0.059 0.941 29 H 0.065 0.935 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.041 0.959 33 H 0.092 0.908 34 H 0.098 0.902 35 H 0.072 0.928 36 H 0.063 0.937 37 H 0.128 0.872 38 H 0.127 0.873 39 H 0.064 0.936 40 H 0.065 0.935 41 H 0.021 0.979 42 H 0.020 0.980 43 H 0.261 0.739 44 H 0.102 0.898 45 H 0.075 0.925 46 H 0.067 0.933 47 H 0.058 0.942 48 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.343 -24.154 3.722 25.519 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.078 4.078 3 N -0.258 5.258 4 C -0.086 4.086 5 C 0.051 3.949 6 H 0.101 0.899 7 C -0.243 4.243 8 N -0.841 5.841 9 S 2.695 3.305 10 O -0.956 6.956 11 O -0.947 6.947 12 C -0.741 4.741 13 C -0.144 4.144 14 C -0.008 4.008 15 C -0.564 4.564 16 H 0.077 0.923 17 C -0.144 4.144 18 N -0.534 5.534 19 Si 0.721 3.279 20 H -0.196 1.196 21 H -0.209 1.209 22 H -0.209 1.209 23 C 0.000 4.000 24 C -0.039 4.039 25 H 0.064 0.936 26 C -0.206 4.206 27 H 0.078 0.922 28 H 0.078 0.922 29 H 0.084 0.916 30 H 0.049 0.951 31 H 0.097 0.903 32 H 0.059 0.941 33 H 0.111 0.889 34 H 0.117 0.883 35 H 0.091 0.909 36 H 0.082 0.918 37 H 0.146 0.854 38 H 0.146 0.854 39 H 0.083 0.917 40 H 0.084 0.916 41 H 0.039 0.961 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.120 0.880 45 H 0.094 0.906 46 H 0.086 0.914 47 H 0.077 0.923 48 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -7.048 -24.067 3.461 25.315 hybrid contribution 0.273 0.865 -0.615 1.095 sum -6.775 -23.202 2.846 24.338 Atomic orbital electron populations 1.21967 0.95067 1.01885 1.02630 1.22118 0.95589 0.89265 1.00794 1.62006 1.03425 1.10497 1.49904 1.22706 0.99221 0.92805 0.93865 1.21178 0.78437 0.95339 0.99935 0.89922 1.22679 1.01478 1.00245 0.99948 1.58013 1.13958 1.52752 1.59370 1.05494 0.73393 0.76518 0.75110 1.93520 1.34664 1.80855 1.86515 1.93614 1.68944 1.86310 1.45852 1.30652 1.10832 1.19329 1.13331 1.21495 0.99226 0.96051 0.97662 1.19063 0.97644 0.88294 0.95769 1.21293 1.37080 0.92254 1.05737 0.92336 1.25023 0.95426 0.98791 0.95160 1.69964 1.44598 1.18456 1.20398 0.86505 0.79102 0.81692 0.80566 1.19604 1.20925 1.20931 1.21602 0.95552 0.87776 0.95102 1.21967 0.87762 0.95888 0.98305 0.93639 1.21871 1.00198 0.98777 0.99707 0.92236 0.92248 0.91633 0.95063 0.90329 0.94104 0.88948 0.88335 0.90929 0.91795 0.85418 0.85424 0.91688 0.91632 0.96114 0.96115 0.92944 0.88021 0.90641 0.91364 0.92259 0.91643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 9.16 37.16 0.34 -0.66 16 2 C 0.05 0.37 5.03 -3.82 -0.02 0.36 16 3 N -0.53 -4.93 4.62 -226.05 -1.05 -5.97 16 4 C 0.04 0.41 4.36 -3.46 -0.02 0.40 16 5 C 0.16 1.68 3.69 -67.26 -0.25 1.43 16 6 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 7 C -0.19 -2.09 7.62 37.16 0.28 -1.81 16 8 N -1.00 -12.33 3.24 -105.95 -0.34 -12.67 16 9 S 2.60 39.86 4.85 -107.50 -0.52 39.33 16 10 O -0.97 -17.29 16.32 -57.54 -0.94 -18.23 16 11 O -0.96 -16.37 13.68 -57.54 -0.79 -17.15 16 12 C -0.61 -9.73 5.91 37.16 0.22 -9.51 16 13 C -0.10 -2.16 5.16 -26.73 -0.14 -2.30 16 14 C 0.03 0.78 4.97 -27.89 -0.14 0.64 16 15 C -0.53 -14.89 9.11 -34.44 -0.31 -15.20 16 16 H 0.06 1.61 7.74 -52.48 -0.41 1.21 16 17 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -26.68 13.29 55.43 0.74 -25.94 16 19 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 22 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 23 C 0.13 1.37 5.94 -3.60 -0.02 1.35 16 24 C 0.07 0.69 2.56 -67.59 -0.17 0.52 16 25 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 26 C -0.15 -1.10 8.73 37.16 0.32 -0.78 16 27 H 0.06 0.38 6.18 -51.93 -0.32 0.06 16 28 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.03 0.24 8.08 -51.93 -0.42 -0.18 16 31 H 0.08 0.54 6.85 -51.93 -0.36 0.18 16 32 H 0.04 0.44 8.13 -51.93 -0.42 0.01 16 33 H 0.09 0.73 5.73 -51.93 -0.30 0.43 16 34 H 0.10 1.27 6.47 -51.93 -0.34 0.94 16 35 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 36 H 0.06 0.79 4.82 -51.93 -0.25 0.54 16 37 H 0.13 1.83 6.64 -51.93 -0.34 1.49 16 38 H 0.13 1.86 8.14 -51.93 -0.42 1.44 16 39 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 40 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 41 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.02 0.55 8.14 -51.93 -0.42 0.12 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 44 H 0.10 1.17 6.62 -51.93 -0.34 0.82 16 45 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 46 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 47 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 48 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 372.54 15.07 5.61 5.61 Total: -1.00 -33.46 372.54 -10.77 -44.23 By element: Atomic # 1 Polarization: 6.64 SS G_CDS: -8.47 Total: -1.83 kcal Atomic # 6 Polarization: -24.02 SS G_CDS: 0.00 Total: -24.02 kcal Atomic # 7 Polarization: -43.94 SS G_CDS: -0.65 Total: -44.59 kcal Atomic # 8 Polarization: -33.66 SS G_CDS: -1.73 Total: -35.38 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 39.86 SS G_CDS: -0.52 Total: 39.33 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -33.46 -10.77 -44.23 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330541545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.096 kcal (2) G-P(sol) polarization free energy of solvation -33.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.326 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds