Wall clock time and date at job start Tue Mar 31 2020 11:58:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46871 * 2 1 4 4 C 1.46902 * 111.00213 * 314.30189 * 3 2 1 5 5 C 1.53693 * 109.25785 * 172.60926 * 4 3 2 6 6 H 1.09001 * 109.79768 * 294.42563 * 5 4 3 7 7 C 1.52999 * 109.70301 * 173.68942 * 5 4 3 8 8 N 1.47078 * 108.27492 * 54.08186 * 5 4 3 9 9 S 1.65603 * 120.88126 * 128.75450 * 8 5 4 10 10 O 1.42101 * 104.27988 * 192.30848 * 9 8 5 11 11 O 1.42102 * 104.27765 * 320.17103 * 9 8 5 12 12 C 1.81408 * 104.44631 * 76.23977 * 9 8 5 13 13 C 1.53000 * 109.47239 * 180.02562 * 12 9 8 14 14 C 1.52993 * 109.47265 * 179.97438 * 13 12 9 15 15 C 1.50702 * 109.47038 * 180.02562 * 14 13 12 16 16 H 1.08003 * 120.00466 * 359.97438 * 15 14 13 17 17 C 1.37878 * 120.00072 * 180.02562 * 15 14 13 18 18 N 1.31509 * 119.99998 * 0.02562 * 17 15 14 19 19 Si 1.86804 * 120.00074 * 179.97438 * 17 15 14 20 20 H 1.48493 * 109.47083 * 359.97438 * 19 17 15 21 21 H 1.48499 * 109.47075 * 119.99879 * 19 17 15 22 22 H 1.48501 * 109.46824 * 240.00075 * 19 17 15 23 23 C 1.47077 * 118.23992 * 308.48555 * 8 5 4 24 24 C 1.46905 * 110.99637 * 190.00443 * 3 2 1 25 25 H 1.08994 * 109.49339 * 67.29463 * 24 3 2 26 26 C 1.52996 * 109.51316 * 307.22556 * 24 3 2 27 27 H 1.09002 * 109.47474 * 59.99823 * 1 2 3 28 28 H 1.08994 * 109.47178 * 180.02562 * 1 2 3 29 29 H 1.08999 * 109.46678 * 299.99643 * 1 2 3 30 30 H 1.08999 * 109.46678 * 240.00357 * 2 1 3 31 31 H 1.08993 * 109.46920 * 120.00334 * 2 1 3 32 32 H 1.08999 * 109.49107 * 292.70771 * 4 3 2 33 33 H 1.09000 * 109.49211 * 52.76384 * 4 3 2 34 34 H 1.08991 * 109.46844 * 309.10902 * 7 5 4 35 35 H 1.08998 * 109.46953 * 69.11214 * 7 5 4 36 36 H 1.08995 * 109.46689 * 189.10930 * 7 5 4 37 37 H 1.08998 * 109.47132 * 300.00101 * 12 9 8 38 38 H 1.08998 * 109.47429 * 60.00157 * 12 9 8 39 39 H 1.09003 * 109.47265 * 300.00275 * 13 12 9 40 40 H 1.09004 * 109.47333 * 59.99354 * 13 12 9 41 41 H 1.08998 * 109.47325 * 299.99955 * 14 13 12 42 42 H 1.08998 * 109.47211 * 59.99996 * 14 13 12 43 43 H 0.97000 * 120.00675 * 180.02562 * 18 17 15 44 44 H 1.09003 * 109.63046 * 171.16688 * 23 8 5 45 45 H 1.08998 * 109.63067 * 291.74663 * 23 8 5 46 46 H 1.08997 * 109.47622 * 300.12586 * 26 24 3 47 47 H 1.09000 * 109.47274 * 60.12442 * 26 24 3 48 48 H 1.08995 * 109.47304 * 180.12230 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.2921 2.2007 -0.9815 5 6 1.7023 3.6731 -0.8207 6 1 1.3724 4.0445 0.1495 7 6 1.0724 4.5089 -1.9368 8 7 3.1682 3.7557 -0.9088 9 16 3.8987 4.8248 -1.9411 10 8 5.2595 4.4162 -1.9635 11 8 3.1005 4.7789 -3.1158 12 6 3.7307 6.4336 -1.1198 13 6 4.3745 7.5181 -1.9859 14 6 4.2322 8.8750 -1.2936 15 6 4.8658 9.9433 -2.1470 16 1 5.3245 9.6807 -3.0889 17 6 4.8608 11.2559 -1.7250 18 7 4.3036 11.5756 -0.5775 19 14 5.6468 12.5800 -2.7826 20 1 6.2015 11.9647 -4.0150 21 1 4.6237 13.5914 -3.1510 22 1 6.7405 13.2364 -2.0222 23 6 3.9680 2.8677 -0.0515 24 6 3.4685 1.4311 -0.2383 25 1 3.6805 1.1017 -1.2554 26 6 4.1794 0.5102 0.7554 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8899 32 1 1.5345 1.8605 -1.9883 33 1 0.2197 2.1023 -0.8126 34 1 1.2838 4.0460 -2.9007 35 1 -0.0060 4.5608 -1.7873 36 1 1.4909 5.5151 -1.9173 37 1 2.6740 6.6611 -0.9791 38 1 4.2274 6.4002 -0.1501 39 1 5.4312 7.2908 -2.1270 40 1 3.8775 7.5514 -2.9555 41 1 3.1755 9.1021 -1.1529 42 1 4.7289 8.8420 -0.3239 43 1 4.2998 12.4990 -0.2807 44 1 5.0179 2.9305 -0.3377 45 1 3.8516 3.1632 0.9912 46 1 3.9664 0.8393 1.7724 47 1 3.8239 -0.5116 0.6222 48 1 5.2544 0.5466 0.5794 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330541545.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:22 Heat of formation + Delta-G solvation = -89.567188 kcal Electronic energy + Delta-G solvation = -26288.473655 eV Core-core repulsion = 22697.688050 eV Total energy + Delta-G solvation = -3590.785604 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.56905 -38.49156 -37.15340 -36.53844 -36.50271 -34.46726 -34.16886 -31.57906 -30.08757 -29.61885 -27.16687 -26.17615 -25.59093 -23.09173 -22.83429 -22.19328 -20.99213 -19.86388 -18.64054 -18.13828 -17.71672 -17.25094 -16.85464 -16.50296 -16.41849 -16.13179 -15.72546 -15.61619 -15.32994 -14.54366 -14.52092 -14.19858 -14.08241 -13.88483 -13.53325 -13.41787 -13.35094 -13.23692 -13.03241 -12.93194 -12.79053 -12.76442 -12.72691 -12.62084 -12.40409 -12.21506 -12.15166 -12.09582 -11.86702 -11.76122 -11.54773 -11.38606 -11.33633 -11.08071 -10.59583 -10.03334 -9.25068 -8.24070 -6.35317 -0.80109 1.38849 1.39375 1.52812 1.60938 2.38734 2.73204 2.85684 3.09327 3.14017 3.43557 3.72982 3.81988 3.83844 3.97092 4.05537 4.17130 4.27670 4.32773 4.34334 4.39906 4.49143 4.58980 4.61657 4.63650 4.69929 4.72917 4.82119 4.87637 4.89209 4.97907 5.02457 5.03230 5.09040 5.13596 5.17261 5.32381 5.38814 5.43035 5.49078 5.59350 5.62100 5.77546 6.09135 6.14873 6.17781 6.80196 7.34128 8.87717 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.028255 B = 0.002844 C = 0.002772 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 990.748535 B = 9843.444143 C =10099.716970 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.048 3.952 3 N -0.534 5.534 4 C 0.045 3.955 5 C 0.154 3.846 6 H 0.100 0.900 7 C -0.188 4.188 8 N -0.998 5.998 9 S 2.617 3.383 10 O -0.992 6.992 11 O -0.976 6.976 12 C -0.610 4.610 13 C -0.104 4.104 14 C 0.032 3.968 15 C -0.552 4.552 16 H 0.059 0.941 17 C 0.003 3.997 18 N -0.930 5.930 19 Si 0.964 3.036 20 H -0.264 1.264 21 H -0.275 1.275 22 H -0.276 1.276 23 C 0.118 3.882 24 C 0.070 3.930 25 H 0.029 0.971 26 C -0.142 4.142 27 H 0.057 0.943 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.027 0.973 31 H 0.088 0.912 32 H 0.026 0.974 33 H 0.113 0.887 34 H 0.079 0.921 35 H 0.099 0.901 36 H 0.051 0.949 37 H 0.144 0.856 38 H 0.141 0.859 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.004 0.996 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.093 0.907 45 H 0.092 0.908 46 H 0.073 0.927 47 H 0.069 0.931 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.004 -25.207 4.212 26.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.079 4.079 3 N -0.260 5.260 4 C -0.084 4.084 5 C 0.048 3.952 6 H 0.118 0.882 7 C -0.247 4.247 8 N -0.837 5.837 9 S 2.716 3.284 10 O -0.982 6.982 11 O -0.966 6.966 12 C -0.740 4.740 13 C -0.143 4.143 14 C -0.006 4.006 15 C -0.590 4.590 16 H 0.078 0.922 17 C -0.196 4.196 18 N -0.569 5.569 19 Si 0.788 3.212 20 H -0.188 1.188 21 H -0.201 1.201 22 H -0.202 1.202 23 C -0.007 4.007 24 C -0.040 4.040 25 H 0.047 0.953 26 C -0.200 4.200 27 H 0.076 0.924 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.045 0.955 31 H 0.107 0.893 32 H 0.044 0.956 33 H 0.131 0.869 34 H 0.098 0.902 35 H 0.118 0.882 36 H 0.069 0.931 37 H 0.162 0.838 38 H 0.159 0.841 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.022 0.978 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.111 0.889 45 H 0.110 0.890 46 H 0.092 0.908 47 H 0.088 0.912 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -7.705 -25.119 3.947 26.569 hybrid contribution 0.426 1.122 -0.727 1.403 sum -7.279 -23.998 3.220 25.283 Atomic orbital electron populations 1.21940 0.94034 1.02711 1.02500 1.22204 0.96458 0.88188 1.01048 1.62052 1.02978 1.11530 1.49393 1.22716 1.00463 0.91961 0.93305 1.21400 0.77069 0.96256 1.00455 0.88204 1.22680 1.03336 0.99341 0.99293 1.57796 1.14925 1.51761 1.59227 1.04669 0.72597 0.76205 0.74974 1.93480 1.36513 1.81225 1.87017 1.93603 1.69148 1.86531 1.47291 1.30621 1.11611 1.18623 1.13194 1.21298 0.99814 0.95081 0.98120 1.18950 0.95954 0.90652 0.95050 1.21753 1.37466 0.93534 1.06250 0.92231 1.25942 0.95868 1.01275 0.96476 1.70073 1.45634 1.19256 1.21987 0.85419 0.78309 0.78568 0.78911 1.18824 1.20092 1.20162 1.21818 0.95040 0.88326 0.95545 1.21972 0.88539 0.95354 0.98155 0.95332 1.21840 1.00199 0.98739 0.99199 0.92402 0.91047 0.91607 0.95512 0.89324 0.95561 0.86871 0.90179 0.88204 0.93057 0.83791 0.84083 0.91840 0.91513 0.97792 0.97980 0.92577 0.88871 0.88978 0.90785 0.91222 0.91273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.58 9.16 71.98 0.66 -0.92 16 2 C 0.05 0.62 5.03 86.30 0.43 1.05 16 3 N -0.53 -8.83 4.62 -869.10 -4.02 -12.84 16 4 C 0.04 0.78 4.36 86.54 0.38 1.16 16 5 C 0.15 3.03 3.69 45.11 0.17 3.20 16 6 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 7 C -0.19 -4.05 7.62 71.98 0.55 -3.50 16 8 N -1.00 -23.61 3.24 -489.13 -1.58 -25.19 16 9 S 2.62 80.13 4.85 -56.49 -0.27 79.86 16 10 O -0.99 -35.75 16.32 -127.65 -2.08 -37.83 16 11 O -0.98 -33.56 13.68 -127.65 -1.75 -35.31 16 12 C -0.61 -19.37 5.91 71.98 0.43 -18.95 16 13 C -0.10 -4.35 5.16 30.59 0.16 -4.19 16 14 C 0.03 1.69 4.97 29.85 0.15 1.83 16 15 C -0.55 -31.75 9.11 25.60 0.23 -31.52 16 16 H 0.06 3.32 7.74 -2.91 -0.02 3.30 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.03 13.29 21.45 0.28 -55.75 16 19 Si 0.96 44.45 29.54 68.60 2.03 46.48 16 20 H -0.26 -11.76 7.11 99.48 0.71 -11.05 16 21 H -0.28 -12.29 7.11 99.48 0.71 -11.59 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 C 0.12 2.44 5.94 86.35 0.51 2.95 16 24 C 0.07 1.28 2.56 44.99 0.12 1.39 16 25 H 0.03 0.62 8.14 -2.39 -0.02 0.60 16 26 C -0.14 -1.85 8.73 71.98 0.63 -1.22 16 27 H 0.06 0.61 6.18 -2.39 -0.01 0.59 16 28 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.03 0.37 8.08 -2.39 -0.02 0.36 16 31 H 0.09 0.97 6.85 -2.39 -0.02 0.96 16 32 H 0.03 0.54 8.13 -2.39 -0.02 0.52 16 33 H 0.11 1.50 5.73 -2.39 -0.01 1.49 16 34 H 0.08 2.04 6.47 -2.39 -0.02 2.03 16 35 H 0.10 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.05 1.23 4.82 -2.39 -0.01 1.21 16 37 H 0.14 4.06 6.64 -2.39 -0.02 4.04 16 38 H 0.14 4.06 8.14 -2.39 -0.02 4.04 16 39 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 40 H 0.07 2.72 8.14 -2.38 -0.02 2.70 16 41 H 0.00 0.20 8.14 -2.39 -0.02 0.18 16 42 H 0.00 0.10 8.14 -2.39 -0.02 0.08 16 43 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 44 H 0.09 2.10 6.62 -2.39 -0.02 2.08 16 45 H 0.09 1.60 8.14 -2.39 -0.02 1.59 16 46 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 47 H 0.07 0.77 6.56 -2.39 -0.02 0.75 16 48 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 Total: -1.00 -71.94 372.54 -1.61 -73.55 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: 0.92 Total: 15.12 kcal Atomic # 6 Polarization: -52.96 SS G_CDS: 4.87 Total: -48.09 kcal Atomic # 7 Polarization: -88.47 SS G_CDS: -5.32 Total: -93.79 kcal Atomic # 8 Polarization: -69.31 SS G_CDS: -3.83 Total: -73.14 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 2.03 Total: 46.48 kcal Atomic # 16 Polarization: 80.13 SS G_CDS: -0.27 Total: 79.86 kcal Total: -71.94 -1.61 -73.55 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330541545.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.015 kcal (2) G-P(sol) polarization free energy of solvation -71.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.960 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds