Wall clock time and date at job start Tue Mar 31 2020 11:58:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46903 * 109.47005 * 2 1 4 4 C 1.46903 * 110.99575 * 293.94771 * 3 2 1 5 5 C 1.53235 * 109.33796 * 187.25434 * 4 3 2 6 6 H 1.09001 * 109.62956 * 186.27109 * 5 4 3 7 7 C 1.52997 * 109.63008 * 65.88378 * 5 4 3 8 8 N 1.47078 * 108.52350 * 306.17070 * 5 4 3 9 9 S 1.65600 * 120.88683 * 231.18641 * 8 5 4 10 10 O 1.42095 * 104.27900 * 206.07263 * 9 8 5 11 11 O 1.42106 * 104.27321 * 333.92899 * 9 8 5 12 12 C 1.81401 * 104.45050 * 89.99924 * 9 8 5 13 13 C 1.53000 * 109.47345 * 180.02562 * 12 9 8 14 14 C 1.53000 * 109.47229 * 179.97438 * 13 12 9 15 15 C 1.50699 * 109.46980 * 179.97438 * 14 13 12 16 16 H 1.07996 * 120.00053 * 0.02562 * 15 14 13 17 17 C 1.37878 * 119.99661 * 180.02562 * 15 14 13 18 18 N 1.31506 * 120.00172 * 0.02562 * 17 15 14 19 19 Si 1.86801 * 119.99599 * 180.02562 * 17 15 14 20 20 H 1.48505 * 109.47350 * 60.00135 * 19 17 15 21 21 H 1.48503 * 109.47161 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47318 * 299.99816 * 19 17 15 23 23 C 1.47084 * 118.23525 * 51.18628 * 8 5 4 24 24 C 1.46896 * 111.00358 * 58.25065 * 3 2 1 25 25 H 1.08998 * 109.49217 * 292.71478 * 24 3 2 26 26 C 1.53007 * 109.48931 * 52.78755 * 24 3 2 27 27 H 1.08993 * 109.47078 * 299.99963 * 1 2 3 28 28 H 1.08999 * 109.47185 * 60.00443 * 1 2 3 29 29 H 1.09006 * 109.46901 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47302 * 239.99533 * 2 1 3 31 31 H 1.08999 * 109.47185 * 119.99557 * 2 1 3 32 32 H 1.09009 * 109.49061 * 67.29545 * 4 3 2 33 33 H 1.08998 * 109.51928 * 307.23098 * 4 3 2 34 34 H 1.09002 * 109.47153 * 59.99769 * 7 5 4 35 35 H 1.09001 * 109.46832 * 299.99960 * 7 5 4 36 36 H 1.09004 * 109.47261 * 179.97438 * 7 5 4 37 37 H 1.09002 * 109.47029 * 300.00387 * 12 9 8 38 38 H 1.09000 * 109.47322 * 60.00178 * 12 9 8 39 39 H 1.08993 * 109.47038 * 300.00253 * 13 12 9 40 40 H 1.09005 * 109.46604 * 59.99972 * 13 12 9 41 41 H 1.08993 * 109.47594 * 300.00252 * 14 13 12 42 42 H 1.09007 * 109.46337 * 60.00509 * 14 13 12 43 43 H 0.97006 * 120.00013 * 180.02562 * 18 17 15 44 44 H 1.08998 * 109.62649 * 189.10520 * 23 8 5 45 45 H 1.09000 * 109.79240 * 68.62090 * 23 8 5 46 46 H 1.08997 * 109.46922 * 60.00397 * 26 24 3 47 47 H 1.09004 * 109.46848 * 180.02562 * 26 24 3 48 48 H 1.08991 * 109.47120 * 299.99849 * 26 24 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6702 2.0668 -1.2534 5 6 2.3499 3.4397 -1.2908 6 1 2.0067 3.9945 -2.1640 7 6 3.8677 3.2601 -1.3600 8 7 1.9942 4.1707 -0.0651 9 16 1.3913 5.7113 -0.1388 10 8 1.7468 6.2870 1.1107 11 8 1.9054 6.2308 -1.3576 12 6 -0.4057 5.4894 -0.2492 13 6 -1.0850 6.8583 -0.3246 14 6 -2.6006 6.6711 -0.4183 15 6 -3.2696 8.0194 -0.4919 16 1 -2.6735 8.9198 -0.4740 17 6 -4.6429 8.1035 -0.5820 18 7 -5.3688 7.0072 -0.6032 19 14 -5.4722 9.7748 -0.6739 20 1 -4.9886 10.5020 -1.8751 21 1 -6.9432 9.5932 -0.7648 22 1 -5.1440 10.5580 0.5443 23 6 2.1881 3.4971 1.2279 24 6 1.5148 2.1220 1.1661 25 1 0.4359 2.2488 1.0771 26 6 1.8338 1.3395 2.4417 27 1 -0.3633 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8934 -0.5139 -0.8899 31 1 1.8934 -0.5138 0.8900 32 1 0.5891 2.1945 -1.3089 33 1 2.0098 1.4697 -2.0997 34 1 4.1271 2.7032 -2.2604 35 1 4.2089 2.7111 -0.4823 36 1 4.3485 4.2381 -1.3869 37 1 -0.6466 4.9149 -1.1437 38 1 -0.7607 4.9553 0.6322 39 1 -0.8441 7.4331 0.5696 40 1 -0.7299 7.3920 -1.2062 41 1 -2.8411 6.0964 -1.3126 42 1 -2.9558 6.1372 0.4632 43 1 -6.3350 7.0664 -0.6670 44 1 1.7353 4.0911 2.0217 45 1 3.2533 3.3748 1.4243 46 1 2.9128 1.2141 2.5307 47 1 1.4586 1.8864 3.3068 48 1 1.3567 0.3606 2.3964 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330541547.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:28 Heat of formation + Delta-G solvation = -101.380298 kcal Electronic energy + Delta-G solvation = -26535.366758 eV Core-core repulsion = 22944.068899 eV Total energy + Delta-G solvation = -3591.297859 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.72446 -38.32150 -37.14138 -36.66633 -36.48694 -34.20190 -34.05030 -31.43257 -29.90561 -29.67271 -26.98458 -26.50366 -25.62946 -23.78017 -22.67876 -22.20250 -20.53349 -19.43775 -18.74746 -18.55848 -17.53416 -17.24450 -16.77454 -16.61189 -16.49431 -16.05690 -15.66158 -15.27497 -15.01482 -14.56391 -14.49703 -14.22198 -14.05595 -13.59941 -13.56776 -13.56134 -13.29485 -13.24575 -13.04254 -12.99565 -12.90308 -12.75845 -12.69823 -12.64560 -12.47732 -12.35209 -12.31156 -12.19350 -11.84747 -11.80361 -11.55523 -11.46960 -11.38686 -11.04328 -10.59806 -10.05938 -9.13722 -8.24990 -6.36574 -0.83316 1.38781 1.41444 1.49415 1.59485 2.38066 2.74685 2.94483 3.05888 3.08557 3.47786 3.73976 3.79071 3.92642 4.05851 4.10177 4.19468 4.30056 4.32165 4.33422 4.44172 4.47306 4.56617 4.58406 4.72058 4.75105 4.78599 4.86165 4.87544 4.93248 4.97654 5.01287 5.05746 5.09297 5.19750 5.24055 5.28666 5.40912 5.47622 5.50173 5.57318 5.62706 5.75526 6.14485 6.16280 6.20794 6.78332 7.32972 8.86314 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.016459 B = 0.003445 C = 0.003129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.806699 B = 8126.487520 C = 8947.102291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C 0.051 3.949 3 N -0.526 5.526 4 C 0.045 3.955 5 C 0.143 3.857 6 H 0.095 0.905 7 C -0.144 4.144 8 N -0.994 5.994 9 S 2.620 3.380 10 O -0.984 6.984 11 O -0.983 6.983 12 C -0.609 4.609 13 C -0.105 4.105 14 C 0.033 3.967 15 C -0.555 4.555 16 H 0.060 0.940 17 C 0.005 3.995 18 N -0.929 5.929 19 Si 0.963 3.037 20 H -0.267 1.267 21 H -0.280 1.280 22 H -0.267 1.267 23 C 0.125 3.875 24 C 0.063 3.937 25 H 0.043 0.957 26 C -0.144 4.144 27 H 0.050 0.950 28 H 0.046 0.954 29 H 0.068 0.932 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.037 0.963 33 H 0.105 0.895 34 H 0.081 0.919 35 H 0.072 0.928 36 H 0.040 0.960 37 H 0.140 0.860 38 H 0.139 0.861 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.002 0.998 42 H 0.002 0.998 43 H 0.265 0.735 44 H 0.089 0.911 45 H 0.087 0.913 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.159 -17.515 1.857 24.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.252 4.252 2 C -0.077 4.077 3 N -0.250 5.250 4 C -0.084 4.084 5 C 0.038 3.962 6 H 0.113 0.887 7 C -0.203 4.203 8 N -0.832 5.832 9 S 2.717 3.283 10 O -0.975 6.975 11 O -0.973 6.973 12 C -0.739 4.739 13 C -0.144 4.144 14 C -0.005 4.005 15 C -0.593 4.593 16 H 0.079 0.921 17 C -0.194 4.194 18 N -0.569 5.569 19 Si 0.787 3.213 20 H -0.192 1.192 21 H -0.205 1.205 22 H -0.192 1.192 23 C 0.000 4.000 24 C -0.047 4.047 25 H 0.061 0.939 26 C -0.202 4.202 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.087 0.913 30 H 0.102 0.898 31 H 0.108 0.892 32 H 0.055 0.945 33 H 0.123 0.877 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.059 0.941 37 H 0.158 0.842 38 H 0.157 0.843 39 H 0.084 0.916 40 H 0.084 0.916 41 H 0.020 0.980 42 H 0.020 0.980 43 H 0.074 0.926 44 H 0.107 0.893 45 H 0.105 0.895 46 H 0.090 0.910 47 H 0.085 0.915 48 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 18.047 -16.776 1.901 24.713 hybrid contribution -2.391 0.532 -0.193 2.457 sum 15.657 -16.243 1.708 22.625 Atomic orbital electron populations 1.22440 0.98574 1.02681 1.01503 1.22266 0.92454 0.89080 1.03875 1.62150 1.59109 1.02403 1.01340 1.22532 0.97945 0.94327 0.93643 1.21291 0.97323 0.92298 0.85320 0.88704 1.21932 0.93299 1.01385 1.03715 1.57814 1.78427 1.33731 1.13253 1.04588 0.77347 0.73340 0.73036 1.93519 1.82520 1.76326 1.45115 1.93522 1.77983 1.78037 1.47790 1.30570 1.24090 1.06732 1.12506 1.21308 0.98438 0.92701 1.01952 1.18937 0.89833 0.95979 0.95758 1.21702 0.92617 0.93876 1.51125 0.92149 1.25930 0.98221 1.00784 0.94454 1.70062 1.06221 1.29599 1.51029 0.85529 0.77191 0.79304 0.79244 1.19196 1.20511 1.19184 1.21714 1.02618 0.92484 0.83160 1.22038 0.97011 0.93340 0.92311 0.93931 1.21868 1.03130 1.00257 0.94962 0.93052 0.93445 0.91266 0.89754 0.89196 0.94504 0.87657 0.89996 0.90860 0.94105 0.84221 0.84263 0.91616 0.91594 0.97993 0.98011 0.92586 0.89260 0.89509 0.91003 0.91469 0.91145 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 9.08 71.98 0.65 -1.98 16 2 C 0.05 0.60 5.51 86.30 0.48 1.07 16 3 N -0.53 -7.80 4.18 -870.03 -3.63 -11.44 16 4 C 0.05 0.72 4.55 86.38 0.39 1.11 16 5 C 0.14 2.83 3.09 44.96 0.14 2.97 16 6 H 0.09 1.96 7.20 -2.39 -0.02 1.94 16 7 C -0.14 -2.55 9.21 71.98 0.66 -1.89 16 8 N -0.99 -22.94 2.96 -489.92 -1.45 -24.39 16 9 S 2.62 79.88 5.42 -56.49 -0.31 79.57 16 10 O -0.98 -35.07 16.79 -127.65 -2.14 -37.21 16 11 O -0.98 -34.97 16.79 -127.65 -2.14 -37.12 16 12 C -0.61 -19.26 6.18 71.98 0.44 -18.82 16 13 C -0.10 -4.38 5.16 30.59 0.16 -4.23 16 14 C 0.03 1.74 4.97 29.85 0.15 1.89 16 15 C -0.56 -31.91 9.11 25.60 0.23 -31.68 16 16 H 0.06 3.34 7.74 -2.91 -0.02 3.32 16 17 C 0.00 0.26 5.46 84.66 0.46 0.72 16 18 N -0.93 -55.93 13.29 21.45 0.28 -55.64 16 19 Si 0.96 44.30 29.54 68.60 2.03 46.32 16 20 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 21 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 22 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 23 C 0.13 2.47 5.34 86.35 0.46 2.93 16 24 C 0.06 1.03 1.97 45.00 0.09 1.12 16 25 H 0.04 0.79 6.70 -2.39 -0.02 0.77 16 26 C -0.14 -1.79 8.61 71.98 0.62 -1.17 16 27 H 0.05 0.79 6.17 -2.39 -0.01 0.78 16 28 H 0.05 0.75 6.72 -2.39 -0.02 0.73 16 29 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 30 H 0.08 0.85 8.05 -2.39 -0.02 0.83 16 31 H 0.09 0.91 6.31 -2.39 -0.02 0.89 16 32 H 0.04 0.65 6.84 -2.38 -0.02 0.63 16 33 H 0.11 1.29 8.04 -2.39 -0.02 1.28 16 34 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.26 7.07 -2.39 -0.02 1.24 16 36 H 0.04 0.84 8.14 -2.38 -0.02 0.82 16 37 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 38 H 0.14 3.97 8.14 -2.39 -0.02 3.95 16 39 H 0.07 2.70 8.14 -2.39 -0.02 2.68 16 40 H 0.07 2.71 8.14 -2.38 -0.02 2.69 16 41 H 0.00 0.09 8.14 -2.39 -0.02 0.07 16 42 H 0.00 0.08 8.14 -2.38 -0.02 0.06 16 43 H 0.27 14.99 8.31 -92.70 -0.77 14.22 16 44 H 0.09 1.81 7.19 -2.39 -0.02 1.79 16 45 H 0.09 1.58 7.62 -2.39 -0.02 1.56 16 46 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 47 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 48 H 0.07 0.77 5.96 -2.39 -0.01 0.75 16 Total: -1.00 -71.94 377.99 -1.51 -73.45 By element: Atomic # 1 Polarization: 13.50 SS G_CDS: 0.91 Total: 14.41 kcal Atomic # 6 Polarization: -52.90 SS G_CDS: 4.94 Total: -47.96 kcal Atomic # 7 Polarization: -86.67 SS G_CDS: -4.80 Total: -91.47 kcal Atomic # 8 Polarization: -70.04 SS G_CDS: -4.29 Total: -74.33 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.32 kcal Atomic # 16 Polarization: 79.88 SS G_CDS: -0.31 Total: 79.57 kcal Total: -71.94 -1.51 -73.45 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330541547.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.933 kcal (2) G-P(sol) polarization free energy of solvation -71.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.870 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds