Wall clock time and date at job start Tue Mar 31 2020 12:25:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00449 * 2 1 4 4 C 1.52995 * 109.47222 * 84.99973 * 3 2 1 5 5 C 1.53001 * 109.47577 * 174.80465 * 4 3 2 6 6 H 1.09005 * 109.45212 * 305.18929 * 5 4 3 7 7 C 1.53044 * 109.46072 * 65.15699 * 5 4 3 8 8 C 1.53120 * 109.27747 * 179.20016 * 7 5 4 9 9 C 1.53119 * 109.21135 * 302.31514 * 8 7 5 10 10 C 1.53175 * 109.21074 * 57.62602 * 9 8 7 11 11 N 1.46844 * 109.55605 * 300.86154 * 10 9 8 12 12 C 1.46900 * 111.00228 * 185.84024 * 11 10 9 13 13 S 1.65607 * 119.99761 * 180.02562 * 2 1 3 14 14 O 1.42101 * 104.27446 * 26.07189 * 13 2 1 15 15 O 1.42099 * 104.27389 * 153.92810 * 13 2 1 16 16 C 1.81394 * 104.44951 * 269.99837 * 13 2 1 17 17 C 1.52999 * 109.46945 * 180.02562 * 16 13 2 18 18 C 1.50705 * 109.46888 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00349 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99659 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00443 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46863 * 119.99554 * 22 20 18 25 25 H 1.48499 * 109.47114 * 239.99724 * 22 20 18 26 26 H 1.09000 * 109.47269 * 89.99807 * 1 2 3 27 27 H 1.08995 * 109.47092 * 210.00434 * 1 2 3 28 28 H 1.09006 * 109.46899 * 330.00067 * 1 2 3 29 29 H 1.09008 * 109.47160 * 325.00428 * 3 2 1 30 30 H 1.09001 * 109.47532 * 205.00380 * 3 2 1 31 31 H 1.09004 * 109.47027 * 54.80808 * 4 3 2 32 32 H 1.08997 * 109.47550 * 294.80401 * 4 3 2 33 33 H 1.08995 * 109.50026 * 59.25844 * 7 5 4 34 34 H 1.09004 * 109.53419 * 299.15519 * 7 5 4 35 35 H 1.08996 * 109.52284 * 62.24996 * 8 7 5 36 36 H 1.09000 * 109.51914 * 182.37903 * 8 7 5 37 37 H 1.09003 * 109.50364 * 177.62991 * 9 8 7 38 38 H 1.09007 * 109.50408 * 297.74400 * 9 8 7 39 39 H 1.09001 * 109.44149 * 180.83815 * 10 9 8 40 40 H 1.08999 * 109.44492 * 60.88833 * 10 9 8 41 41 H 1.08999 * 109.46787 * 289.15660 * 12 11 10 42 42 H 1.09002 * 109.47063 * 49.15153 * 12 11 10 43 43 H 1.08996 * 109.47341 * 169.15102 * 12 11 10 44 44 H 1.09004 * 109.47367 * 299.99756 * 16 13 2 45 45 H 1.09006 * 109.47068 * 59.99830 * 16 13 2 46 46 H 1.09002 * 109.47304 * 299.99794 * 17 16 13 47 47 H 1.08994 * 109.47286 * 60.00356 * 17 16 13 48 48 H 0.96999 * 120.00198 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7732 1.4370 5 6 3.2185 3.0283 1.4504 6 1 4.1698 2.8130 0.9635 7 6 2.5051 4.1552 0.6998 8 6 3.3752 5.4147 0.7329 9 6 3.6539 5.7963 2.1894 10 6 4.3339 4.6204 2.8973 11 7 3.4617 3.4405 2.8387 12 6 4.0201 2.3334 3.6264 13 16 2.2929 -1.4342 -0.0006 14 8 1.3968 -2.3559 -0.6063 15 8 3.5394 -1.1189 -0.6057 16 6 2.5193 -1.8270 1.7557 17 6 3.2818 -3.1467 1.8890 18 6 3.4693 -3.4733 3.3483 19 1 3.0836 -2.8061 4.1049 20 6 4.1343 -4.6234 3.7173 21 7 4.6045 -5.4356 2.7960 22 14 4.3673 -5.0279 5.5261 23 1 3.7497 -3.9619 6.3553 24 1 3.7187 -6.3288 5.8299 25 1 5.8181 -5.1148 5.8310 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 1.6502 2.0043 -0.5894 30 1 3.1858 1.1176 -0.4344 31 1 2.8088 0.9996 2.0481 32 1 1.3596 2.0120 1.8401 33 1 1.5476 4.3616 1.1779 34 1 2.3383 3.8553 -0.3349 35 1 4.3174 5.2201 0.2207 36 1 2.8522 6.2318 0.2359 37 1 4.3077 6.6680 2.2185 38 1 2.7143 6.0286 2.6909 39 1 4.5206 4.8827 3.9386 40 1 5.2799 4.3977 2.4037 41 1 4.9013 1.9369 3.1220 42 1 4.3001 2.6963 4.6154 43 1 3.2734 1.5458 3.7264 44 1 3.0867 -1.0298 2.2362 45 1 1.5450 -1.9197 2.2358 46 1 2.7149 -3.9441 1.4086 47 1 4.2560 -3.0535 1.4092 48 1 5.0720 -6.2449 3.0557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330905387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:32 Heat of formation + Delta-G solvation = -86.042879 kcal Electronic energy + Delta-G solvation = -26218.923365 eV Core-core repulsion = 22628.290586 eV Total energy + Delta-G solvation = -3590.632779 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.59328 -36.72917 -36.52651 -35.41553 -33.91810 -33.76540 -32.79080 -31.16703 -28.91951 -26.83986 -25.92007 -25.63703 -23.82348 -22.75850 -21.62119 -20.84075 -19.84416 -18.50329 -17.53108 -16.52933 -16.41084 -15.77818 -15.58824 -15.28187 -14.90612 -14.56252 -14.55125 -14.42349 -14.25421 -13.64748 -13.45580 -13.36827 -13.04490 -12.61306 -12.49720 -12.34499 -12.25493 -12.06958 -11.81571 -11.75256 -11.65844 -11.57844 -11.32487 -11.17245 -11.10375 -10.98082 -10.92100 -10.84418 -10.56426 -10.41824 -10.39535 -10.20722 -9.76318 -9.31523 -8.77052 -8.51425 -8.43654 -6.13187 -4.18665 0.76242 3.01006 3.24452 3.31865 3.35165 3.73055 4.28816 4.38454 4.50375 4.54135 4.64291 4.67597 4.76125 4.90030 5.06654 5.15632 5.19485 5.22045 5.24101 5.37783 5.40098 5.41670 5.47653 5.53381 5.58563 5.59433 5.63581 5.66819 5.73435 5.75737 5.81829 5.84190 5.89173 5.94658 5.98203 6.11951 6.14032 6.26858 6.49816 6.67899 6.94003 6.99173 7.29408 7.35242 7.79989 8.16818 8.84967 9.46175 10.97882 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004015 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.691305 B = 6971.627459 C = 8743.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -1.009 6.009 3 C 0.116 3.884 4 C -0.143 4.143 5 C 0.086 3.914 6 H 0.046 0.954 7 C -0.114 4.114 8 C -0.123 4.123 9 C -0.117 4.117 10 C 0.054 3.946 11 N -0.538 5.538 12 C 0.017 3.983 13 S 2.588 3.412 14 O -0.964 6.964 15 O -0.965 6.965 16 C -0.589 4.589 17 C 0.028 3.972 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.058 3.942 21 N -0.890 5.890 22 Si 0.899 3.101 23 H -0.272 1.272 24 H -0.282 1.282 25 H -0.282 1.282 26 H 0.054 0.946 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.072 0.928 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.059 0.941 36 H 0.063 0.937 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.073 0.927 40 H 0.032 0.968 41 H 0.031 0.969 42 H 0.066 0.934 43 H 0.077 0.923 44 H 0.117 0.883 45 H 0.119 0.881 46 H 0.033 0.967 47 H 0.033 0.967 48 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.220 21.870 -2.465 22.619 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.845 5.845 3 C -0.010 4.010 4 C -0.183 4.183 5 C -0.023 4.023 6 H 0.064 0.936 7 C -0.151 4.151 8 C -0.161 4.161 9 C -0.154 4.154 10 C -0.074 4.074 11 N -0.263 5.263 12 C -0.131 4.131 13 S 2.686 3.314 14 O -0.954 6.954 15 O -0.955 6.955 16 C -0.722 4.722 17 C -0.011 4.011 18 C -0.558 4.558 19 H 0.080 0.920 20 C -0.145 4.145 21 N -0.528 5.528 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 H 0.072 0.928 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.098 0.902 30 H 0.111 0.889 31 H 0.091 0.909 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.088 0.912 35 H 0.078 0.922 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.050 0.950 41 H 0.049 0.951 42 H 0.085 0.915 43 H 0.095 0.905 44 H 0.136 0.864 45 H 0.137 0.863 46 H 0.051 0.949 47 H 0.051 0.949 48 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -5.345 21.397 -3.118 22.274 hybrid contribution 0.855 -0.350 1.395 1.673 sum -4.489 21.047 -1.723 21.589 Atomic orbital electron populations 1.21386 0.78822 1.02764 1.01881 1.57639 1.14887 1.21490 1.90490 1.21372 0.97924 0.85301 0.96400 1.22269 1.01257 0.96929 0.97805 1.21608 0.97839 0.94348 0.88462 0.93638 1.21698 0.99337 0.94213 0.99893 1.21595 1.00007 0.97811 0.96644 1.21609 1.01212 0.96916 0.95695 1.22120 0.93875 0.90814 1.00566 1.61929 1.47051 1.05857 1.11440 1.22477 0.98964 0.94099 0.97582 1.05782 0.73635 0.72635 0.79321 1.93538 1.64759 1.62042 1.75077 1.93518 1.43978 1.82831 1.75195 1.30531 1.10177 1.10590 1.20950 1.18966 0.94919 0.87180 1.00035 1.21031 1.36933 1.07030 0.90778 0.91995 1.25069 0.95323 0.96118 0.97974 1.69964 1.37332 1.12706 1.32843 0.86431 0.77963 0.78416 0.84587 1.19620 1.20785 1.20807 0.92751 0.91066 0.91328 0.90198 0.88939 0.90915 0.90363 0.90988 0.91215 0.92242 0.91857 0.91763 0.91164 0.90841 0.94964 0.95082 0.91500 0.90482 0.86427 0.86252 0.94884 0.94913 0.92589 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.07 10.22 59.84 0.61 1.68 16 2 N -1.01 -13.71 3.12 -121.76 -0.38 -14.09 16 3 C 0.12 1.35 5.26 -4.05 -0.02 1.33 16 4 C -0.14 -1.56 4.75 -26.73 -0.13 -1.69 16 5 C 0.09 0.89 1.89 -67.72 -0.13 0.76 16 6 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 7 C -0.11 -0.96 5.11 -26.65 -0.14 -1.10 16 8 C -0.12 -0.95 6.00 -26.61 -0.16 -1.11 16 9 C -0.12 -0.90 6.11 -26.58 -0.16 -1.07 16 10 C 0.05 0.50 5.46 -3.76 -0.02 0.48 16 11 N -0.54 -5.71 4.75 -234.84 -1.11 -6.82 16 12 C 0.02 0.19 8.89 60.06 0.53 0.72 16 13 S 2.59 47.61 5.38 -107.50 -0.58 47.03 16 14 O -0.96 -20.37 17.09 -57.54 -0.98 -21.35 16 15 O -0.96 -20.14 16.53 -57.54 -0.95 -21.09 16 16 C -0.59 -11.35 6.11 37.16 0.23 -11.12 16 17 C 0.03 0.72 4.98 -27.88 -0.14 0.58 16 18 C -0.52 -14.25 9.11 -34.44 -0.31 -14.57 16 19 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 20 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 21 N -0.89 -26.45 13.29 55.43 0.74 -25.72 16 22 Si 0.90 21.13 29.54 -169.99 -5.02 16.11 16 23 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 24 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 25 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.79 7.79 -51.93 -0.40 0.39 16 28 H 0.07 0.57 8.07 -51.93 -0.42 0.15 16 29 H 0.08 0.73 6.82 -51.92 -0.35 0.38 16 30 H 0.09 1.19 6.82 -51.93 -0.35 0.84 16 31 H 0.07 0.89 4.88 -51.93 -0.25 0.63 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.53 6.73 -51.93 -0.35 0.18 16 35 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.57 8.14 -51.92 -0.42 0.14 16 39 H 0.07 0.62 8.01 -51.93 -0.42 0.21 16 40 H 0.03 0.31 8.14 -51.93 -0.42 -0.12 16 41 H 0.03 0.36 8.12 -51.93 -0.42 -0.06 16 42 H 0.07 0.67 7.97 -51.93 -0.41 0.26 16 43 H 0.08 0.90 6.51 -51.93 -0.34 0.56 16 44 H 0.12 2.04 6.85 -51.92 -0.36 1.69 16 45 H 0.12 2.07 8.14 -51.92 -0.42 1.64 16 46 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 47 H 0.03 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 382.67 15.07 5.77 5.77 Total: -1.00 -33.81 382.67 -11.15 -44.96 By element: Atomic # 1 Polarization: 7.47 SS G_CDS: -8.69 Total: -1.22 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 0.07 Total: -23.57 kcal Atomic # 7 Polarization: -45.87 SS G_CDS: -0.76 Total: -46.63 kcal Atomic # 8 Polarization: -40.51 SS G_CDS: -1.93 Total: -42.44 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 47.61 SS G_CDS: -0.58 Total: 47.03 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -33.81 -11.15 -44.96 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330905387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.084 kcal (2) G-P(sol) polarization free energy of solvation -33.809 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.150 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.959 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.043 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds