Wall clock time and date at job start Tue Mar 31 2020 12:25:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46496 * 120.00449 * 2 1 4 4 C 1.52995 * 109.47222 * 84.99973 * 3 2 1 5 5 C 1.53001 * 109.47577 * 174.80465 * 4 3 2 6 6 H 1.09005 * 109.45212 * 305.18929 * 5 4 3 7 7 C 1.53044 * 109.46072 * 65.15699 * 5 4 3 8 8 C 1.53120 * 109.27747 * 179.20016 * 7 5 4 9 9 C 1.53119 * 109.21135 * 302.31514 * 8 7 5 10 10 C 1.53175 * 109.21074 * 57.62602 * 9 8 7 11 11 N 1.46844 * 109.55605 * 300.86154 * 10 9 8 12 12 C 1.46900 * 111.00228 * 185.84024 * 11 10 9 13 13 S 1.65607 * 119.99761 * 180.02562 * 2 1 3 14 14 O 1.42101 * 104.27446 * 26.07189 * 13 2 1 15 15 O 1.42099 * 104.27389 * 153.92810 * 13 2 1 16 16 C 1.81394 * 104.44951 * 269.99837 * 13 2 1 17 17 C 1.52999 * 109.46945 * 180.02562 * 16 13 2 18 18 C 1.50705 * 109.46888 * 180.02562 * 17 16 13 19 19 H 1.07998 * 120.00349 * 359.97438 * 18 17 16 20 20 C 1.37879 * 119.99659 * 180.02562 * 18 17 16 21 21 N 1.31515 * 120.00443 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99710 * 179.97438 * 20 18 17 23 23 H 1.48502 * 109.47132 * 0.02562 * 22 20 18 24 24 H 1.48506 * 109.46863 * 119.99554 * 22 20 18 25 25 H 1.48499 * 109.47114 * 239.99724 * 22 20 18 26 26 H 1.09000 * 109.47269 * 89.99807 * 1 2 3 27 27 H 1.08995 * 109.47092 * 210.00434 * 1 2 3 28 28 H 1.09006 * 109.46899 * 330.00067 * 1 2 3 29 29 H 1.09008 * 109.47160 * 325.00428 * 3 2 1 30 30 H 1.09001 * 109.47532 * 205.00380 * 3 2 1 31 31 H 1.09004 * 109.47027 * 54.80808 * 4 3 2 32 32 H 1.08997 * 109.47550 * 294.80401 * 4 3 2 33 33 H 1.08995 * 109.50026 * 59.25844 * 7 5 4 34 34 H 1.09004 * 109.53419 * 299.15519 * 7 5 4 35 35 H 1.08996 * 109.52284 * 62.24996 * 8 7 5 36 36 H 1.09000 * 109.51914 * 182.37903 * 8 7 5 37 37 H 1.09003 * 109.50364 * 177.62991 * 9 8 7 38 38 H 1.09007 * 109.50408 * 297.74400 * 9 8 7 39 39 H 1.09001 * 109.44149 * 180.83815 * 10 9 8 40 40 H 1.08999 * 109.44492 * 60.88833 * 10 9 8 41 41 H 1.08999 * 109.46787 * 289.15660 * 12 11 10 42 42 H 1.09002 * 109.47063 * 49.15153 * 12 11 10 43 43 H 1.08996 * 109.47341 * 169.15102 * 12 11 10 44 44 H 1.09004 * 109.47367 * 299.99756 * 16 13 2 45 45 H 1.09006 * 109.47068 * 59.99830 * 16 13 2 46 46 H 1.09002 * 109.47304 * 299.99794 * 17 16 13 47 47 H 1.08994 * 109.47286 * 60.00356 * 17 16 13 48 48 H 0.96999 * 120.00198 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2686 0.0000 4 6 2.3437 1.7732 1.4370 5 6 3.2185 3.0283 1.4504 6 1 4.1698 2.8130 0.9635 7 6 2.5051 4.1552 0.6998 8 6 3.3752 5.4147 0.7329 9 6 3.6539 5.7963 2.1894 10 6 4.3339 4.6204 2.8973 11 7 3.4617 3.4405 2.8387 12 6 4.0201 2.3334 3.6264 13 16 2.2929 -1.4342 -0.0006 14 8 1.3968 -2.3559 -0.6063 15 8 3.5394 -1.1189 -0.6057 16 6 2.5193 -1.8270 1.7557 17 6 3.2818 -3.1467 1.8890 18 6 3.4693 -3.4733 3.3483 19 1 3.0836 -2.8061 4.1049 20 6 4.1343 -4.6234 3.7173 21 7 4.6045 -5.4356 2.7960 22 14 4.3673 -5.0279 5.5261 23 1 3.7497 -3.9619 6.3553 24 1 3.7187 -6.3288 5.8299 25 1 5.8181 -5.1148 5.8310 26 1 -0.3634 0.0000 -1.0277 27 1 -0.3633 -0.8899 0.5139 28 1 -0.3633 0.8901 0.5139 29 1 1.6502 2.0043 -0.5894 30 1 3.1858 1.1176 -0.4344 31 1 2.8088 0.9996 2.0481 32 1 1.3596 2.0120 1.8401 33 1 1.5476 4.3616 1.1779 34 1 2.3383 3.8553 -0.3349 35 1 4.3174 5.2201 0.2207 36 1 2.8522 6.2318 0.2359 37 1 4.3077 6.6680 2.2185 38 1 2.7143 6.0286 2.6909 39 1 4.5206 4.8827 3.9386 40 1 5.2799 4.3977 2.4037 41 1 4.9013 1.9369 3.1220 42 1 4.3001 2.6963 4.6154 43 1 3.2734 1.5458 3.7264 44 1 3.0867 -1.0298 2.2362 45 1 1.5450 -1.9197 2.2358 46 1 2.7149 -3.9441 1.4086 47 1 4.2560 -3.0535 1.4092 48 1 5.0720 -6.2449 3.0557 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330905387.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:25:31 Heat of formation + Delta-G solvation = -109.914057 kcal Electronic energy + Delta-G solvation = -26219.958497 eV Core-core repulsion = 22628.290586 eV Total energy + Delta-G solvation = -3591.667911 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.36074 -38.26111 -37.60923 -36.99985 -35.91794 -34.48281 -33.64351 -33.13956 -29.72176 -27.69162 -27.59701 -26.81755 -24.77965 -23.70085 -23.25690 -21.71752 -20.58189 -19.90352 -19.08892 -18.31051 -17.57383 -17.16545 -16.65206 -16.53684 -16.24570 -15.86223 -15.52432 -15.35404 -15.15243 -14.89887 -14.62582 -14.47253 -14.26271 -13.86868 -13.75244 -13.55395 -13.32586 -13.23079 -13.07890 -13.00485 -12.97008 -12.84132 -12.79478 -12.59155 -12.42713 -12.28603 -12.11469 -12.04761 -11.78999 -11.65101 -11.54881 -11.26159 -11.13308 -10.97376 -10.66823 -9.93740 -9.27284 -8.27181 -6.41233 -0.72969 1.39875 1.40396 1.53781 1.71929 2.36847 2.80555 2.94118 3.06229 3.15526 3.65852 3.83745 3.88932 3.99751 4.05852 4.07055 4.16841 4.29224 4.35465 4.40703 4.45780 4.56295 4.58144 4.67477 4.68273 4.69965 4.78422 4.82844 4.89567 4.95547 5.00784 5.03533 5.10905 5.14560 5.17006 5.23994 5.24508 5.29483 5.33159 5.36699 5.54587 5.66278 5.67312 6.04695 6.12292 6.20834 6.72326 7.29029 8.85357 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.004015 C = 0.003202 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.691305 B = 6971.627459 C = 8743.751655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.085 3.915 2 N -0.997 5.997 3 C 0.113 3.887 4 C -0.139 4.139 5 C 0.085 3.915 6 H 0.030 0.970 7 C -0.111 4.111 8 C -0.123 4.123 9 C -0.113 4.113 10 C 0.050 3.950 11 N -0.541 5.541 12 C 0.016 3.984 13 S 2.607 3.393 14 O -0.994 6.994 15 O -0.995 6.995 16 C -0.587 4.587 17 C 0.022 3.978 18 C -0.536 4.536 19 H 0.075 0.925 20 C -0.004 4.004 21 N -0.934 5.934 22 Si 0.973 3.027 23 H -0.255 1.255 24 H -0.278 1.278 25 H -0.278 1.278 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.105 0.895 29 H 0.115 0.885 30 H 0.075 0.925 31 H 0.055 0.945 32 H 0.092 0.908 33 H 0.076 0.924 34 H 0.080 0.920 35 H 0.054 0.946 36 H 0.078 0.922 37 H 0.077 0.923 38 H 0.070 0.930 39 H 0.079 0.921 40 H 0.024 0.976 41 H 0.017 0.983 42 H 0.076 0.924 43 H 0.070 0.930 44 H 0.136 0.864 45 H 0.141 0.859 46 H 0.006 0.994 47 H 0.004 0.996 48 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.716 24.390 -1.324 25.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.836 5.836 3 C -0.012 4.012 4 C -0.179 4.179 5 C -0.024 4.024 6 H 0.048 0.952 7 C -0.148 4.148 8 C -0.161 4.161 9 C -0.150 4.150 10 C -0.078 4.078 11 N -0.266 5.266 12 C -0.132 4.132 13 S 2.705 3.295 14 O -0.984 6.984 15 O -0.985 6.985 16 C -0.719 4.719 17 C -0.017 4.017 18 C -0.575 4.575 19 H 0.094 0.906 20 C -0.202 4.202 21 N -0.574 5.574 22 Si 0.797 3.203 23 H -0.179 1.179 24 H -0.203 1.203 25 H -0.204 1.204 26 H 0.081 0.919 27 H 0.087 0.913 28 H 0.124 0.876 29 H 0.133 0.867 30 H 0.094 0.906 31 H 0.074 0.926 32 H 0.111 0.889 33 H 0.095 0.905 34 H 0.099 0.901 35 H 0.073 0.927 36 H 0.097 0.903 37 H 0.096 0.904 38 H 0.089 0.911 39 H 0.097 0.903 40 H 0.042 0.958 41 H 0.035 0.965 42 H 0.094 0.906 43 H 0.089 0.911 44 H 0.154 0.846 45 H 0.159 0.841 46 H 0.024 0.976 47 H 0.023 0.977 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.844 23.925 -1.969 24.962 hybrid contribution 1.298 -1.055 0.989 1.944 sum -5.545 22.870 -0.979 23.553 Atomic orbital electron populations 1.21727 0.76617 1.04485 1.03089 1.57248 1.16050 1.20243 1.90016 1.21585 0.97516 0.84734 0.97406 1.22224 1.01956 0.96718 0.96958 1.21641 0.97294 0.94969 0.88530 0.95221 1.21701 0.99293 0.93684 1.00150 1.21613 0.99857 0.97979 0.96655 1.21598 1.01309 0.96608 0.95521 1.22218 0.93547 0.90846 1.01153 1.61990 1.47217 1.05900 1.11446 1.22474 0.98230 0.94393 0.98150 1.04883 0.72974 0.73315 0.78354 1.93492 1.65352 1.64089 1.75459 1.93474 1.45899 1.83541 1.75585 1.30429 1.10633 1.07722 1.23083 1.18812 0.94035 0.89802 0.99057 1.21516 1.36660 1.07365 0.91917 0.90638 1.26114 0.94923 0.96027 1.03125 1.70109 1.38411 1.13402 1.35493 0.85277 0.78033 0.78535 0.78496 1.17859 1.20323 1.20372 0.91906 0.91346 0.87649 0.86741 0.90614 0.92609 0.88910 0.90501 0.90124 0.92748 0.90333 0.90426 0.91135 0.90278 0.95771 0.96477 0.90559 0.91083 0.84624 0.84079 0.97607 0.97748 0.92393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.63 10.22 127.77 1.31 2.94 16 2 N -1.00 -25.34 3.12 -539.14 -1.68 -27.02 16 3 C 0.11 2.39 5.26 86.38 0.45 2.84 16 4 C -0.14 -2.78 4.75 30.59 0.15 -2.63 16 5 C 0.08 1.62 1.89 44.94 0.09 1.71 16 6 H 0.03 0.66 8.14 -2.38 -0.02 0.64 16 7 C -0.11 -1.56 5.11 30.65 0.16 -1.41 16 8 C -0.12 -1.59 6.00 30.67 0.18 -1.41 16 9 C -0.11 -1.49 6.11 30.69 0.19 -1.30 16 10 C 0.05 0.85 5.46 86.37 0.47 1.32 16 11 N -0.54 -10.75 4.75 -896.89 -4.26 -15.01 16 12 C 0.02 0.34 8.89 127.69 1.13 1.48 16 13 S 2.61 96.67 5.38 -56.49 -0.30 96.37 16 14 O -0.99 -42.54 17.09 -127.65 -2.18 -44.72 16 15 O -0.99 -42.62 16.53 -127.65 -2.11 -44.73 16 16 C -0.59 -22.74 6.11 71.98 0.44 -22.30 16 17 C 0.02 1.16 4.98 29.85 0.15 1.30 16 18 C -0.54 -29.83 9.11 25.60 0.23 -29.59 16 19 H 0.08 3.89 7.74 -2.91 -0.02 3.86 16 20 C 0.00 -0.20 5.46 84.65 0.46 0.26 16 21 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 22 Si 0.97 43.39 29.54 68.60 2.03 45.41 16 23 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 24 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.43 16 26 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.07 1.38 7.79 -2.39 -0.02 1.36 16 28 H 0.11 1.28 8.07 -2.38 -0.02 1.26 16 29 H 0.11 1.68 6.82 -2.38 -0.02 1.67 16 30 H 0.08 1.90 6.82 -2.39 -0.02 1.88 16 31 H 0.06 1.30 4.88 -2.39 -0.01 1.29 16 32 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 34 H 0.08 0.96 6.73 -2.39 -0.02 0.94 16 35 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 36 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 38 H 0.07 0.95 8.14 -2.38 -0.02 0.93 16 39 H 0.08 1.23 8.01 -2.39 -0.02 1.21 16 40 H 0.02 0.44 8.14 -2.39 -0.02 0.43 16 41 H 0.02 0.40 8.12 -2.39 -0.02 0.38 16 42 H 0.08 1.47 7.97 -2.39 -0.02 1.45 16 43 H 0.07 1.61 6.51 -2.39 -0.02 1.59 16 44 H 0.14 4.70 6.85 -2.39 -0.02 4.69 16 45 H 0.14 4.77 8.14 -2.39 -0.02 4.75 16 46 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 47 H 0.00 0.24 8.14 -2.39 -0.02 0.22 16 48 H 0.27 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -74.82 382.67 -1.90 -76.73 By element: Atomic # 1 Polarization: 15.76 SS G_CDS: 0.91 Total: 16.67 kcal Atomic # 6 Polarization: -52.21 SS G_CDS: 5.41 Total: -46.80 kcal Atomic # 7 Polarization: -93.28 SS G_CDS: -5.65 Total: -98.93 kcal Atomic # 8 Polarization: -85.16 SS G_CDS: -4.29 Total: -89.45 kcal Atomic # 14 Polarization: 43.39 SS G_CDS: 2.03 Total: 45.41 kcal Atomic # 16 Polarization: 96.67 SS G_CDS: -0.30 Total: 96.37 kcal Total: -74.82 -1.90 -76.73 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330905387.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.189 kcal (2) G-P(sol) polarization free energy of solvation -74.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.725 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds