Wall clock time and date at job start Tue Mar 31 2020 11:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46894 * 109.47230 * 2 1 4 4 C 1.47447 * 111.00352 * 65.39726 * 3 2 1 5 5 C 1.54324 * 107.36974 * 236.66261 * 4 3 2 6 6 C 1.55392 * 102.89799 * 337.89240 * 5 4 3 7 7 C 1.47852 * 110.99959 * 304.55293 * 3 2 1 8 8 H 1.08998 * 110.37083 * 27.53633 * 7 3 2 9 9 C 1.52991 * 110.37254 * 265.30536 * 7 3 2 10 10 N 1.46494 * 109.47339 * 63.72432 * 9 7 3 11 11 S 1.65598 * 120.00497 * 164.24063 * 10 9 7 12 12 O 1.42096 * 104.28136 * 181.07356 * 11 10 9 13 13 O 1.42106 * 104.27864 * 308.92900 * 11 10 9 14 14 C 1.81404 * 104.44963 * 64.99880 * 11 10 9 15 15 C 1.53001 * 109.47057 * 180.02562 * 14 11 10 16 16 C 1.53000 * 109.47036 * 299.99644 * 15 14 11 17 17 C 1.53002 * 109.47392 * 60.00179 * 15 14 11 18 18 C 1.50705 * 109.46661 * 179.97438 * 15 14 11 19 19 H 1.07994 * 120.00203 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99426 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99572 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.46912 * 59.99669 * 22 20 18 24 24 H 1.48498 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46796 * 299.99952 * 22 20 18 26 26 H 1.09003 * 109.47101 * 308.00087 * 1 2 3 27 27 H 1.08998 * 109.47220 * 68.00186 * 1 2 3 28 28 H 1.08999 * 109.47347 * 188.00424 * 1 2 3 29 29 H 1.08989 * 109.46861 * 239.99625 * 2 1 3 30 30 H 1.09001 * 109.46570 * 119.99629 * 2 1 3 31 31 H 1.08997 * 109.88577 * 356.14669 * 4 3 2 32 32 H 1.08996 * 109.89043 * 117.17666 * 4 3 2 33 33 H 1.09001 * 110.70398 * 96.18230 * 5 4 3 34 34 H 1.09004 * 110.70169 * 219.40936 * 5 4 3 35 35 H 1.08995 * 110.87189 * 277.38863 * 6 5 4 36 36 H 1.09004 * 111.05376 * 153.65359 * 6 5 4 37 37 H 1.09002 * 109.46906 * 183.72333 * 9 7 3 38 38 H 1.08993 * 109.47569 * 303.72265 * 9 7 3 39 39 H 0.97000 * 120.00334 * 344.24312 * 10 9 7 40 40 H 1.09001 * 109.47005 * 300.00209 * 14 11 10 41 41 H 1.09000 * 109.47070 * 60.00135 * 14 11 10 42 42 H 1.09001 * 109.46477 * 60.00476 * 16 15 14 43 43 H 1.08995 * 109.46841 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.47264 * 300.00372 * 16 15 14 45 45 H 1.08998 * 109.47203 * 59.99278 * 17 15 14 46 46 H 1.08999 * 109.47068 * 180.02562 * 17 15 14 47 47 H 1.09006 * 109.46629 * 299.99909 * 17 15 14 48 48 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6556 2.0742 1.2515 5 6 0.8528 3.3347 0.8665 6 6 1.2909 3.5897 -0.6024 7 6 1.4582 2.1454 -1.1368 8 1 0.4917 1.7342 -1.4281 9 6 2.4249 2.1223 -2.3224 10 7 2.5827 0.7454 -2.7971 11 16 3.2455 0.4537 -4.2864 12 8 3.2153 -0.9613 -4.4124 13 8 2.5030 1.2838 -5.1691 14 6 4.9549 1.0440 -4.1446 15 6 5.6812 0.8272 -5.4737 16 6 5.6833 -0.6640 -5.8164 17 6 4.9637 1.6037 -6.5796 18 6 7.1012 1.3181 -5.3560 19 1 7.4505 1.7427 -4.4264 20 6 7.9543 1.2252 -6.4352 21 7 7.5291 0.7077 -7.5670 22 14 9.7147 1.8331 -6.2891 23 1 10.4109 1.0799 -5.2153 24 1 10.4196 1.6228 -7.5791 25 1 9.7125 3.2805 -5.9569 26 1 -0.3633 0.6327 0.8098 27 1 -0.3633 0.3849 -0.9528 28 1 -0.3634 -1.0176 0.1431 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.0429 1.4192 1.8708 32 1 2.5571 2.3600 1.7933 33 1 -0.2185 3.1408 0.9207 34 1 1.1260 4.1753 1.5044 35 1 2.2363 4.1310 -0.6373 36 1 0.5173 4.1233 -1.1547 37 1 2.0276 2.7408 -3.1272 38 1 3.3935 2.5118 -2.0092 39 1 2.2990 0.0045 -2.2391 40 1 4.9534 2.1064 -3.9008 41 1 5.4660 0.4911 -3.3564 42 1 4.6561 -1.0185 -5.9016 43 1 6.2011 -0.8184 -6.7629 44 1 6.1945 -1.2171 -5.0285 45 1 4.9621 2.6660 -6.3354 46 1 5.4809 1.4488 -7.5265 47 1 3.9365 1.2490 -6.6648 48 1 8.1292 0.6427 -8.3263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000331326066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:06 Heat of formation + Delta-G solvation = -66.804460 kcal Electronic energy + Delta-G solvation = -26662.161863 eV Core-core repulsion = 23072.363325 eV Total energy + Delta-G solvation = -3589.798539 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -39.92248 -36.47605 -36.21921 -35.27187 -34.82434 -33.54254 -31.62260 -29.70378 -28.94367 -26.56100 -25.67117 -25.21702 -25.01345 -23.11451 -21.51601 -20.09986 -19.41296 -18.63697 -17.34274 -16.90565 -16.05505 -15.80033 -15.51916 -15.25396 -14.69768 -14.58254 -14.52505 -14.33784 -13.80202 -13.18243 -13.03472 -12.86472 -12.78635 -12.45664 -12.31865 -12.21847 -12.05799 -11.95059 -11.61651 -11.45934 -11.36419 -11.19453 -11.01900 -11.00859 -10.90489 -10.84497 -10.74394 -10.64227 -10.34918 -10.22945 -10.06275 -9.60704 -9.54957 -9.15749 -8.63599 -8.50265 -8.36280 -5.99645 -4.11437 0.95792 3.28402 3.29686 3.34905 3.36814 3.68208 4.31153 4.35357 4.38826 4.44479 4.64948 4.72558 4.86553 4.89918 5.00138 5.02129 5.13030 5.19788 5.25610 5.35032 5.48935 5.52100 5.54921 5.62336 5.63274 5.72422 5.77807 5.79611 5.84316 5.92737 6.01282 6.14901 6.44560 6.74054 6.75616 6.84010 6.84463 6.95553 7.07542 7.25885 7.36170 7.55027 7.71491 8.02135 8.13828 8.37291 8.86902 9.53673 11.01624 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003547 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.439738 B = 7891.701476 C = 8450.485126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.040 3.960 3 N -0.521 5.521 4 C 0.040 3.960 5 C -0.141 4.141 6 C -0.124 4.124 7 C 0.056 3.944 8 H 0.073 0.927 9 C 0.132 3.868 10 N -1.129 6.129 11 S 2.593 3.407 12 O -0.968 6.968 13 O -0.967 6.967 14 C -0.580 4.580 15 C 0.082 3.918 16 C -0.163 4.163 17 C -0.163 4.163 18 C -0.501 4.501 19 H 0.058 0.942 20 C 0.064 3.936 21 N -0.884 5.884 22 Si 0.896 3.104 23 H -0.277 1.277 24 H -0.287 1.287 25 H -0.277 1.277 26 H 0.058 0.942 27 H 0.061 0.939 28 H 0.063 0.937 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.065 0.935 34 H 0.075 0.925 35 H 0.082 0.918 36 H 0.077 0.923 37 H 0.082 0.918 38 H 0.071 0.929 39 H 0.407 0.593 40 H 0.117 0.883 41 H 0.119 0.881 42 H 0.027 0.973 43 H 0.095 0.905 44 H 0.036 0.964 45 H 0.036 0.964 46 H 0.094 0.906 47 H 0.028 0.972 48 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.493 3.309 16.636 21.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.254 4.254 2 C -0.089 4.089 3 N -0.245 5.245 4 C -0.088 4.088 5 C -0.179 4.179 6 C -0.163 4.163 7 C -0.053 4.053 8 H 0.091 0.909 9 C 0.005 3.995 10 N -0.889 5.889 11 S 2.691 3.309 12 O -0.959 6.959 13 O -0.957 6.957 14 C -0.714 4.714 15 C 0.079 3.921 16 C -0.221 4.221 17 C -0.221 4.221 18 C -0.541 4.541 19 H 0.076 0.924 20 C -0.137 4.137 21 N -0.523 5.523 22 Si 0.724 3.276 23 H -0.203 1.203 24 H -0.212 1.212 25 H -0.203 1.203 26 H 0.077 0.923 27 H 0.080 0.920 28 H 0.082 0.918 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.075 0.925 32 H 0.096 0.904 33 H 0.084 0.916 34 H 0.094 0.906 35 H 0.100 0.900 36 H 0.096 0.904 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.244 0.756 40 H 0.135 0.865 41 H 0.137 0.863 42 H 0.046 0.954 43 H 0.113 0.887 44 H 0.055 0.945 45 H 0.055 0.945 46 H 0.113 0.887 47 H 0.047 0.953 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -13.319 2.984 15.562 20.700 hybrid contribution 0.516 0.273 0.886 1.061 sum -12.803 3.257 16.448 21.097 Atomic orbital electron populations 1.22508 0.98010 1.02607 1.02292 1.22456 0.93071 0.90487 1.02915 1.63670 1.57138 1.01759 1.01904 1.22828 0.99100 0.94578 0.92279 1.22817 0.99828 0.98421 0.96859 1.22756 1.02577 0.95613 0.95319 1.22918 0.97094 0.93914 0.91394 0.90934 1.21253 0.99781 0.82773 0.95721 1.55994 1.80296 1.13336 1.39317 1.05575 0.78245 0.74611 0.72488 1.93542 1.87736 1.29921 1.84671 1.93529 1.69640 1.70096 1.62427 1.30497 1.19741 1.11052 1.10103 1.17927 0.95069 0.93723 0.85352 1.22268 0.99265 0.96195 1.04375 1.22268 0.97351 0.98808 1.03640 1.20919 0.94217 1.40721 0.98205 0.92354 1.24938 0.98518 0.95009 0.95271 1.69795 1.35596 1.44540 1.02324 0.86602 0.84485 0.79270 0.77287 1.20287 1.21225 1.20288 0.92343 0.91962 0.91813 0.90349 0.90252 0.92526 0.90388 0.91617 0.90601 0.89961 0.90392 0.90009 0.91096 0.75551 0.86504 0.86255 0.95399 0.88687 0.94501 0.94510 0.88725 0.95340 0.92736 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.54 9.19 37.16 0.34 -1.20 16 2 C 0.04 0.36 5.69 -3.83 -0.02 0.34 16 3 N -0.52 -5.05 5.02 -223.39 -1.12 -6.17 16 4 C 0.04 0.31 6.22 -2.83 -0.02 0.29 16 5 C -0.14 -0.96 6.97 -24.77 -0.17 -1.13 16 6 C -0.12 -0.99 6.50 -24.46 -0.16 -1.14 16 7 C 0.06 0.56 2.48 -66.19 -0.16 0.39 16 8 H 0.07 0.72 5.40 -51.93 -0.28 0.44 16 9 C 0.13 1.61 5.84 -4.05 -0.02 1.59 16 10 N -1.13 -16.13 5.84 -10.62 -0.06 -16.19 16 11 S 2.59 49.02 4.49 -107.50 -0.48 48.54 16 12 O -0.97 -20.77 15.70 -57.54 -0.90 -21.67 16 13 O -0.97 -20.49 15.11 -57.54 -0.87 -21.36 16 14 C -0.58 -11.56 5.01 37.16 0.19 -11.38 16 15 C 0.08 2.01 0.52 -155.66 -0.08 1.93 16 16 C -0.16 -4.10 7.78 37.16 0.29 -3.81 16 17 C -0.16 -4.06 7.77 37.16 0.29 -3.77 16 18 C -0.50 -13.31 8.01 -34.44 -0.28 -13.59 16 19 H 0.06 1.51 7.74 -52.49 -0.41 1.10 16 20 C 0.06 1.73 5.15 -17.82 -0.09 1.64 16 21 N -0.88 -24.38 9.35 55.43 0.52 -23.86 16 22 Si 0.90 20.82 29.54 -169.99 -5.02 15.80 16 23 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 24 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H 0.06 0.42 6.50 -51.93 -0.34 0.08 16 27 H 0.06 0.53 6.22 -51.93 -0.32 0.21 16 28 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.08 0.78 5.14 -51.94 -0.27 0.52 16 30 H 0.08 0.65 8.13 -51.93 -0.42 0.22 16 31 H 0.06 0.40 6.43 -51.93 -0.33 0.06 16 32 H 0.08 0.61 8.14 -51.93 -0.42 0.19 16 33 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.08 0.66 8.06 -51.93 -0.42 0.24 16 36 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.00 7.68 -51.93 -0.40 0.60 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 39 H 0.41 5.28 5.19 -34.46 -0.18 5.10 16 40 H 0.12 2.10 8.14 -51.92 -0.42 1.68 16 41 H 0.12 2.20 8.14 -51.92 -0.42 1.78 16 42 H 0.03 0.66 5.46 -51.93 -0.28 0.38 16 43 H 0.09 2.56 6.07 -51.93 -0.32 2.24 16 44 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 45 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 46 H 0.09 2.53 6.07 -51.93 -0.32 2.22 16 47 H 0.03 0.67 5.46 -51.93 -0.28 0.39 16 48 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 LS Contribution 362.80 15.07 5.47 5.47 Total: -1.00 -31.68 362.80 -10.30 -41.98 By element: Atomic # 1 Polarization: 15.24 SS G_CDS: -7.93 Total: 7.31 kcal Atomic # 6 Polarization: -29.94 SS G_CDS: 0.10 Total: -29.85 kcal Atomic # 7 Polarization: -45.56 SS G_CDS: -0.67 Total: -46.22 kcal Atomic # 8 Polarization: -41.25 SS G_CDS: -1.77 Total: -43.03 kcal Atomic # 14 Polarization: 20.82 SS G_CDS: -5.02 Total: 15.80 kcal Atomic # 16 Polarization: 49.02 SS G_CDS: -0.48 Total: 48.54 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -31.68 -10.30 -41.98 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331326066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.823 kcal (2) G-P(sol) polarization free energy of solvation -31.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds