Wall clock time and date at job start Tue Mar 31 2020 11:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46894 * 109.47230 * 2 1 4 4 C 1.47447 * 111.00352 * 65.39726 * 3 2 1 5 5 C 1.54324 * 107.36974 * 236.66261 * 4 3 2 6 6 C 1.55392 * 102.89799 * 337.89240 * 5 4 3 7 7 C 1.47852 * 110.99959 * 304.55293 * 3 2 1 8 8 H 1.08998 * 110.37083 * 27.53633 * 7 3 2 9 9 C 1.52991 * 110.37254 * 265.30536 * 7 3 2 10 10 N 1.46494 * 109.47339 * 63.72432 * 9 7 3 11 11 S 1.65598 * 120.00497 * 164.24063 * 10 9 7 12 12 O 1.42096 * 104.28136 * 181.07356 * 11 10 9 13 13 O 1.42106 * 104.27864 * 308.92900 * 11 10 9 14 14 C 1.81404 * 104.44963 * 64.99880 * 11 10 9 15 15 C 1.53001 * 109.47057 * 180.02562 * 14 11 10 16 16 C 1.53000 * 109.47036 * 299.99644 * 15 14 11 17 17 C 1.53002 * 109.47392 * 60.00179 * 15 14 11 18 18 C 1.50705 * 109.46661 * 179.97438 * 15 14 11 19 19 H 1.07994 * 120.00203 * 359.97438 * 18 15 14 20 20 C 1.37882 * 119.99426 * 179.97438 * 18 15 14 21 21 N 1.31514 * 120.00338 * 359.97438 * 20 18 15 22 22 Si 1.86808 * 119.99572 * 180.02562 * 20 18 15 23 23 H 1.48494 * 109.46912 * 59.99669 * 22 20 18 24 24 H 1.48498 * 109.46918 * 180.02562 * 22 20 18 25 25 H 1.48504 * 109.46796 * 299.99952 * 22 20 18 26 26 H 1.09003 * 109.47101 * 308.00087 * 1 2 3 27 27 H 1.08998 * 109.47220 * 68.00186 * 1 2 3 28 28 H 1.08999 * 109.47347 * 188.00424 * 1 2 3 29 29 H 1.08989 * 109.46861 * 239.99625 * 2 1 3 30 30 H 1.09001 * 109.46570 * 119.99629 * 2 1 3 31 31 H 1.08997 * 109.88577 * 356.14669 * 4 3 2 32 32 H 1.08996 * 109.89043 * 117.17666 * 4 3 2 33 33 H 1.09001 * 110.70398 * 96.18230 * 5 4 3 34 34 H 1.09004 * 110.70169 * 219.40936 * 5 4 3 35 35 H 1.08995 * 110.87189 * 277.38863 * 6 5 4 36 36 H 1.09004 * 111.05376 * 153.65359 * 6 5 4 37 37 H 1.09002 * 109.46906 * 183.72333 * 9 7 3 38 38 H 1.08993 * 109.47569 * 303.72265 * 9 7 3 39 39 H 0.97000 * 120.00334 * 344.24312 * 10 9 7 40 40 H 1.09001 * 109.47005 * 300.00209 * 14 11 10 41 41 H 1.09000 * 109.47070 * 60.00135 * 14 11 10 42 42 H 1.09001 * 109.46477 * 60.00476 * 16 15 14 43 43 H 1.08995 * 109.46841 * 180.02562 * 16 15 14 44 44 H 1.09000 * 109.47264 * 300.00372 * 16 15 14 45 45 H 1.08998 * 109.47203 * 59.99278 * 17 15 14 46 46 H 1.08999 * 109.47068 * 180.02562 * 17 15 14 47 47 H 1.09006 * 109.46629 * 299.99909 * 17 15 14 48 48 H 0.97000 * 119.99959 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6556 2.0742 1.2515 5 6 0.8528 3.3347 0.8665 6 6 1.2909 3.5897 -0.6024 7 6 1.4582 2.1454 -1.1368 8 1 0.4917 1.7342 -1.4281 9 6 2.4249 2.1223 -2.3224 10 7 2.5827 0.7454 -2.7971 11 16 3.2455 0.4537 -4.2864 12 8 3.2153 -0.9613 -4.4124 13 8 2.5030 1.2838 -5.1691 14 6 4.9549 1.0440 -4.1446 15 6 5.6812 0.8272 -5.4737 16 6 5.6833 -0.6640 -5.8164 17 6 4.9637 1.6037 -6.5796 18 6 7.1012 1.3181 -5.3560 19 1 7.4505 1.7427 -4.4264 20 6 7.9543 1.2252 -6.4352 21 7 7.5291 0.7077 -7.5670 22 14 9.7147 1.8331 -6.2891 23 1 10.4109 1.0799 -5.2153 24 1 10.4196 1.6228 -7.5791 25 1 9.7125 3.2805 -5.9569 26 1 -0.3633 0.6327 0.8098 27 1 -0.3633 0.3849 -0.9528 28 1 -0.3634 -1.0176 0.1431 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.0429 1.4192 1.8708 32 1 2.5571 2.3600 1.7933 33 1 -0.2185 3.1408 0.9207 34 1 1.1260 4.1753 1.5044 35 1 2.2363 4.1310 -0.6373 36 1 0.5173 4.1233 -1.1547 37 1 2.0276 2.7408 -3.1272 38 1 3.3935 2.5118 -2.0092 39 1 2.2990 0.0045 -2.2391 40 1 4.9534 2.1064 -3.9008 41 1 5.4660 0.4911 -3.3564 42 1 4.6561 -1.0185 -5.9016 43 1 6.2011 -0.8184 -6.7629 44 1 6.1945 -1.2171 -5.0285 45 1 4.9621 2.6660 -6.3354 46 1 5.4809 1.4488 -7.5265 47 1 3.9365 1.2490 -6.6648 48 1 8.1292 0.6427 -8.3263 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000331326066.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:58:05 Heat of formation + Delta-G solvation = -89.012617 kcal Electronic energy + Delta-G solvation = -26663.124881 eV Core-core repulsion = 23072.363325 eV Total energy + Delta-G solvation = -3590.761556 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.61847 -38.11336 -38.08912 -36.88645 -35.92523 -34.17163 -33.61674 -30.52734 -29.57359 -28.28892 -27.67909 -27.23665 -25.85919 -23.84587 -22.16038 -21.38573 -20.74235 -20.07870 -18.70936 -17.99342 -17.67569 -17.11282 -16.87882 -16.62408 -16.20658 -15.77712 -15.34813 -15.12307 -14.97840 -14.65752 -14.44745 -14.40789 -13.90078 -13.77249 -13.63433 -13.39994 -13.06120 -12.97926 -12.94269 -12.84997 -12.78199 -12.64299 -12.49142 -12.27628 -12.17443 -12.15159 -12.03984 -11.94104 -11.80571 -11.61598 -11.55087 -11.43827 -11.29575 -10.66810 -10.39757 -10.27222 -9.20352 -8.01456 -6.20104 -0.56991 1.46528 1.46710 1.54153 1.93006 2.45621 2.86734 2.98796 3.20565 3.33985 3.69629 3.74712 3.92227 4.06027 4.15009 4.19639 4.21467 4.28841 4.32949 4.46451 4.56416 4.61349 4.64961 4.72004 4.86139 4.88063 4.88869 4.90736 4.99429 5.01240 5.03712 5.04840 5.10540 5.12607 5.20388 5.33127 5.39885 5.42688 5.52259 5.65745 5.98576 6.05013 6.12028 6.13228 6.21374 6.35748 6.84281 7.47995 8.98256 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020089 B = 0.003547 C = 0.003313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1393.439738 B = 7891.701476 C = 8450.485126 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.036 3.964 3 N -0.535 5.535 4 C 0.038 3.962 5 C -0.134 4.134 6 C -0.123 4.123 7 C 0.057 3.943 8 H 0.073 0.927 9 C 0.120 3.880 10 N -1.113 6.113 11 S 2.612 3.388 12 O -0.996 6.996 13 O -0.991 6.991 14 C -0.584 4.584 15 C 0.068 3.932 16 C -0.160 4.160 17 C -0.158 4.158 18 C -0.518 4.518 19 H 0.062 0.938 20 C 0.018 3.982 21 N -0.908 5.908 22 Si 0.955 3.045 23 H -0.273 1.273 24 H -0.287 1.287 25 H -0.271 1.271 26 H 0.067 0.933 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.081 0.919 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.079 0.921 39 H 0.415 0.585 40 H 0.136 0.864 41 H 0.134 0.866 42 H 0.031 0.969 43 H 0.071 0.929 44 H 0.038 0.962 45 H 0.041 0.959 46 H 0.070 0.930 47 H 0.032 0.968 48 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.927 4.324 18.857 23.838 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.249 4.249 2 C -0.093 4.093 3 N -0.259 5.259 4 C -0.089 4.089 5 C -0.172 4.172 6 C -0.162 4.162 7 C -0.053 4.053 8 H 0.091 0.909 9 C -0.006 4.006 10 N -0.877 5.877 11 S 2.710 3.290 12 O -0.986 6.986 13 O -0.980 6.980 14 C -0.716 4.716 15 C 0.066 3.934 16 C -0.217 4.217 17 C -0.216 4.216 18 C -0.557 4.557 19 H 0.081 0.919 20 C -0.182 4.182 21 N -0.547 5.547 22 Si 0.781 3.219 23 H -0.198 1.198 24 H -0.213 1.213 25 H -0.196 1.196 26 H 0.086 0.914 27 H 0.072 0.928 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.106 0.894 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.091 0.909 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.106 0.894 37 H 0.099 0.901 38 H 0.097 0.903 39 H 0.255 0.745 40 H 0.154 0.846 41 H 0.152 0.848 42 H 0.050 0.950 43 H 0.090 0.910 44 H 0.057 0.943 45 H 0.060 0.940 46 H 0.089 0.911 47 H 0.051 0.949 48 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -13.750 3.996 17.793 22.839 hybrid contribution 0.609 -0.047 0.246 0.659 sum -13.141 3.949 18.040 22.665 Atomic orbital electron populations 1.22456 0.97082 1.03204 1.02171 1.22482 0.93887 0.90304 1.02629 1.63620 1.57643 1.02074 1.02558 1.22872 0.99448 0.95083 0.91514 1.22799 1.00054 0.98313 0.96063 1.22784 1.03007 0.94262 0.96161 1.22890 0.96214 0.95442 0.90751 0.90922 1.21560 1.01073 0.81191 0.96788 1.55600 1.79296 1.14876 1.37947 1.04714 0.77641 0.73476 0.73179 1.93495 1.87923 1.31582 1.85636 1.93495 1.69895 1.70495 1.64151 1.30429 1.20437 1.12822 1.07956 1.17932 0.95072 0.92874 0.87485 1.22203 0.99171 0.97153 1.03210 1.22192 0.97322 0.99255 1.02848 1.21267 0.95365 1.40688 0.98357 0.91937 1.25681 1.02131 0.95272 0.95084 1.69939 1.36637 1.45309 1.02814 0.85667 0.80173 0.78966 0.77139 1.19789 1.21307 1.19614 0.91404 0.92790 0.91172 0.91707 0.89395 0.91619 0.90497 0.90920 0.89376 0.90011 0.89439 0.90103 0.90311 0.74485 0.84561 0.84820 0.94980 0.90997 0.94273 0.94009 0.91097 0.94899 0.92934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.64 9.19 71.98 0.66 -1.98 16 2 C 0.04 0.59 5.69 86.31 0.49 1.08 16 3 N -0.53 -9.29 5.02 -860.66 -4.32 -13.61 16 4 C 0.04 0.50 6.22 86.65 0.54 1.04 16 5 C -0.13 -1.44 6.97 31.87 0.22 -1.22 16 6 C -0.12 -1.66 6.50 32.07 0.21 -1.46 16 7 C 0.06 1.01 2.48 45.38 0.11 1.13 16 8 H 0.07 1.31 5.40 -2.39 -0.01 1.29 16 9 C 0.12 2.74 5.84 86.38 0.50 3.24 16 10 N -1.11 -30.41 5.84 -187.52 -1.10 -31.50 16 11 S 2.61 96.96 4.49 -56.49 -0.25 96.70 16 12 O -1.00 -42.43 15.70 -127.65 -2.00 -44.43 16 13 O -0.99 -41.47 15.11 -127.65 -1.93 -43.40 16 14 C -0.58 -22.62 5.01 71.98 0.36 -22.26 16 15 C 0.07 3.35 0.52 -52.92 -0.03 3.33 16 16 C -0.16 -8.10 7.78 71.98 0.56 -7.54 16 17 C -0.16 -7.95 7.77 71.98 0.56 -7.39 16 18 C -0.52 -27.27 8.01 25.60 0.21 -27.06 16 19 H 0.06 3.16 7.74 -2.91 -0.02 3.14 16 20 C 0.02 0.94 5.15 84.66 0.44 1.38 16 21 N -0.91 -50.79 9.35 21.45 0.20 -50.59 16 22 Si 0.95 42.43 29.54 68.60 2.03 44.45 16 23 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 26 H 0.07 0.81 6.50 -2.39 -0.02 0.79 16 27 H 0.05 0.84 6.22 -2.39 -0.01 0.82 16 28 H 0.07 0.87 8.14 -2.39 -0.02 0.85 16 29 H 0.06 1.22 5.14 -2.39 -0.01 1.21 16 30 H 0.09 1.27 8.13 -2.39 -0.02 1.25 16 31 H 0.07 0.74 6.43 -2.39 -0.02 0.73 16 32 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.09 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.08 1.12 8.06 -2.39 -0.02 1.10 16 36 H 0.09 1.01 8.14 -2.38 -0.02 1.00 16 37 H 0.08 1.86 7.68 -2.39 -0.02 1.85 16 38 H 0.08 1.67 8.14 -2.39 -0.02 1.66 16 39 H 0.42 10.30 5.19 -96.75 -0.50 9.80 16 40 H 0.14 4.67 8.14 -2.39 -0.02 4.65 16 41 H 0.13 4.74 8.14 -2.39 -0.02 4.72 16 42 H 0.03 1.55 5.46 -2.39 -0.01 1.54 16 43 H 0.07 3.96 6.07 -2.39 -0.01 3.95 16 44 H 0.04 1.88 8.14 -2.39 -0.02 1.87 16 45 H 0.04 1.97 8.14 -2.39 -0.02 1.95 16 46 H 0.07 3.88 6.07 -2.39 -0.01 3.87 16 47 H 0.03 1.57 5.46 -2.38 -0.01 1.56 16 48 H 0.26 14.02 8.31 -92.71 -0.77 13.25 16 Total: -1.00 -66.82 362.80 -2.10 -68.91 By element: Atomic # 1 Polarization: 30.72 SS G_CDS: 0.45 Total: 31.17 kcal Atomic # 6 Polarization: -62.54 SS G_CDS: 4.83 Total: -57.71 kcal Atomic # 7 Polarization: -90.48 SS G_CDS: -5.22 Total: -95.70 kcal Atomic # 8 Polarization: -83.90 SS G_CDS: -3.93 Total: -87.83 kcal Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.45 kcal Atomic # 16 Polarization: 96.96 SS G_CDS: -0.25 Total: 96.70 kcal Total: -66.82 -2.10 -68.91 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000331326066.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.100 kcal (2) G-P(sol) polarization free energy of solvation -66.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.917 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.096 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds