Wall clock time and date at job start Tue Mar 31 2020 12:27:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42100 * 110.54059 * 2 1 4 4 O 1.42098 * 110.54580 * 136.74773 * 2 1 3 5 5 N 1.65596 * 104.44986 * 248.37659 * 2 1 3 6 6 C 1.46503 * 120.00240 * 64.99984 * 5 2 1 7 7 C 1.52998 * 109.47405 * 164.99759 * 6 5 2 8 8 C 1.53004 * 109.47088 * 174.84085 * 7 6 5 9 9 H 1.09001 * 109.46474 * 304.24095 * 8 7 6 10 10 C 1.53034 * 109.45915 * 64.21074 * 8 7 6 11 11 C 1.53117 * 109.27730 * 179.19700 * 10 8 7 12 12 C 1.53121 * 109.15934 * 302.33929 * 11 10 8 13 13 C 1.53042 * 109.27349 * 57.65544 * 12 11 10 14 14 N 1.46844 * 109.45912 * 184.25951 * 8 7 6 15 15 C 1.46902 * 111.00277 * 54.14796 * 14 8 7 16 16 C 1.52999 * 109.47268 * 175.80645 * 15 14 8 17 17 C 1.52998 * 109.47027 * 179.97438 * 16 15 14 18 18 C 1.50699 * 109.47199 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99662 * 0.02562 * 18 17 16 20 20 C 1.37877 * 120.00237 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99831 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99966 * 180.02562 * 20 18 17 23 23 H 1.48498 * 109.47249 * 90.00319 * 22 20 18 24 24 H 1.48506 * 109.46832 * 209.99867 * 22 20 18 25 25 H 1.48499 * 109.47378 * 329.99599 * 22 20 18 26 26 H 1.08999 * 109.47252 * 51.62769 * 1 2 3 27 27 H 1.08999 * 109.47304 * 291.62034 * 1 2 3 28 28 H 1.09009 * 109.46862 * 171.62461 * 1 2 3 29 29 H 0.96996 * 120.00102 * 244.99352 * 5 2 1 30 30 H 1.09001 * 109.46668 * 284.99696 * 6 5 2 31 31 H 1.08997 * 109.46921 * 44.99200 * 6 5 2 32 32 H 1.08991 * 109.47215 * 294.84447 * 7 6 5 33 33 H 1.09002 * 109.47092 * 54.84208 * 7 6 5 34 34 H 1.09011 * 109.50342 * 299.13334 * 10 8 7 35 35 H 1.08998 * 109.50800 * 59.25300 * 10 8 7 36 36 H 1.09001 * 109.52368 * 182.44227 * 11 10 8 37 37 H 1.09001 * 109.57761 * 62.27672 * 11 10 8 38 38 H 1.08995 * 109.50773 * 297.71847 * 12 11 10 39 39 H 1.09000 * 109.53703 * 177.61579 * 12 11 10 40 40 H 1.09008 * 109.46211 * 180.80380 * 13 12 11 41 41 H 1.08993 * 109.45411 * 60.83348 * 13 12 11 42 42 H 1.09000 * 109.47041 * 295.81056 * 15 14 8 43 43 H 1.09003 * 109.47131 * 55.80834 * 15 14 8 44 44 H 1.09002 * 109.46929 * 300.00016 * 16 15 14 45 45 H 1.09003 * 109.46890 * 60.00041 * 16 15 14 46 46 H 1.09000 * 109.47217 * 300.00371 * 17 16 15 47 47 H 1.09003 * 109.47197 * 60.00296 * 17 16 15 48 48 H 0.97002 * 120.00087 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3307 0.0000 4 8 2.3127 -0.9691 0.9117 5 7 2.2272 -0.5909 -1.4907 6 6 1.8908 0.1673 -2.6983 7 6 2.6876 -0.3814 -3.8836 8 6 2.2429 0.3230 -5.1670 9 1 1.1660 0.2078 -5.2901 10 6 2.5894 1.8110 -5.0781 11 6 2.1608 2.5079 -6.3724 12 6 2.8570 1.8361 -7.5592 13 6 2.5027 0.3474 -7.5760 14 7 2.9335 -0.2739 -6.3172 15 6 2.7351 -1.7290 -6.3533 16 6 3.3791 -2.3003 -7.6181 17 6 3.1730 -3.8159 -7.6554 18 6 3.8067 -4.3785 -8.9015 19 1 4.3069 -3.7209 -9.5971 20 6 3.7481 -5.7328 -9.1536 21 7 3.1395 -6.5336 -8.3063 22 14 4.5343 -6.4302 -10.6979 23 1 5.9449 -6.7964 -10.4132 24 1 3.7872 -7.6383 -11.1314 25 1 4.4955 -5.4107 -11.7769 26 1 -0.3634 0.6379 -0.8057 27 1 -0.3634 0.3786 0.9553 28 1 -0.3633 -1.0168 -0.1497 29 1 2.6921 -1.4390 -1.5644 30 1 0.8243 0.0716 -2.9019 31 1 2.1393 1.2179 -2.5486 32 1 3.7504 -0.2029 -3.7207 33 1 2.5092 -1.4527 -3.9766 34 1 2.0643 2.2572 -4.2335 35 1 3.6645 1.9267 -4.9413 36 1 2.4449 3.5595 -6.3311 37 1 1.0802 2.4268 -6.4903 38 1 3.9363 1.9522 -7.4614 39 1 2.5237 2.3000 -8.4876 40 1 3.0082 -0.1369 -8.4117 41 1 1.4246 0.2320 -7.6877 42 1 3.1964 -2.1805 -5.4750 43 1 1.6678 -1.9502 -6.3573 44 1 2.9177 -1.8488 -8.4964 45 1 4.4464 -2.0791 -7.6141 46 1 3.6346 -4.2670 -6.7770 47 1 2.1058 -4.0375 -7.6592 48 1 3.0979 -7.4863 -8.4838 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336798171.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:37 Heat of formation + Delta-G solvation = -119.913918 kcal Electronic energy + Delta-G solvation = -25244.980848 eV Core-core repulsion = 21652.879311 eV Total energy + Delta-G solvation = -3592.101537 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.51320 -38.16020 -37.06148 -36.88359 -36.24263 -34.71110 -33.33217 -32.24609 -30.25232 -29.01471 -28.25559 -25.63856 -24.84379 -23.55964 -21.89909 -21.40929 -20.59382 -20.26998 -18.56455 -18.44606 -17.54401 -17.21535 -16.76311 -16.38488 -16.19342 -15.98119 -15.90676 -15.32568 -14.99622 -14.63519 -14.44896 -14.41393 -14.00966 -13.93820 -13.84066 -13.59487 -13.42958 -13.23062 -13.17731 -13.06723 -12.82317 -12.68406 -12.56083 -12.42352 -12.37962 -12.18530 -11.96477 -11.86224 -11.59566 -11.41734 -11.37345 -11.24648 -10.96307 -10.85699 -10.54045 -10.32579 -9.15629 -8.20296 -6.30892 -0.63502 1.39647 1.40827 1.51802 1.80791 2.40593 2.90109 2.97901 3.12949 3.30796 3.82804 3.84837 3.97672 4.03165 4.11425 4.18917 4.21394 4.29662 4.34344 4.39366 4.45037 4.54037 4.61314 4.66995 4.74607 4.86030 4.86689 4.96128 4.99574 5.03115 5.07797 5.10620 5.16459 5.22505 5.23294 5.33213 5.34927 5.41078 5.52120 5.58083 5.75832 5.86117 6.07811 6.17689 6.28654 6.35578 6.85928 7.38259 8.91484 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012693 B = 0.002756 C = 0.002329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2205.458172 B =10157.735184 C =12020.859465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.653 4.653 2 S 2.624 3.376 3 O -0.999 6.999 4 O -1.005 7.005 5 N -1.121 6.121 6 C 0.113 3.887 7 C -0.123 4.123 8 C 0.086 3.914 9 H 0.046 0.954 10 C -0.113 4.113 11 C -0.118 4.118 12 C -0.113 4.113 13 C 0.048 3.952 14 N -0.539 5.539 15 C 0.067 3.933 16 C -0.095 4.095 17 C 0.028 3.972 18 C -0.543 4.543 19 H 0.057 0.943 20 C 0.000 4.000 21 N -0.932 5.932 22 Si 0.963 3.037 23 H -0.273 1.273 24 H -0.281 1.281 25 H -0.264 1.264 26 H 0.149 0.851 27 H 0.145 0.855 28 H 0.146 0.854 29 H 0.421 0.579 30 H 0.089 0.911 31 H 0.087 0.913 32 H 0.070 0.930 33 H 0.068 0.932 34 H 0.088 0.912 35 H 0.063 0.937 36 H 0.077 0.923 37 H 0.064 0.936 38 H 0.062 0.938 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.028 0.972 42 H 0.073 0.927 43 H 0.023 0.977 44 H 0.051 0.949 45 H 0.049 0.951 46 H -0.008 1.008 47 H -0.010 1.010 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.571 19.618 12.874 24.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.807 4.807 2 S 2.720 3.280 3 O -0.989 6.989 4 O -0.996 6.996 5 N -0.881 5.881 6 C -0.013 4.013 7 C -0.162 4.162 8 C -0.023 4.023 9 H 0.064 0.936 10 C -0.151 4.151 11 C -0.155 4.155 12 C -0.151 4.151 13 C -0.080 4.080 14 N -0.264 5.264 15 C -0.061 4.061 16 C -0.132 4.132 17 C -0.010 4.010 18 C -0.581 4.581 19 H 0.075 0.925 20 C -0.198 4.198 21 N -0.573 5.573 22 Si 0.788 3.212 23 H -0.198 1.198 24 H -0.206 1.206 25 H -0.188 1.188 26 H 0.168 0.832 27 H 0.164 0.836 28 H 0.164 0.836 29 H 0.256 0.744 30 H 0.107 0.893 31 H 0.105 0.895 32 H 0.089 0.911 33 H 0.086 0.914 34 H 0.107 0.893 35 H 0.082 0.918 36 H 0.096 0.904 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.094 0.906 40 H 0.085 0.915 41 H 0.046 0.954 42 H 0.091 0.909 43 H 0.041 0.959 44 H 0.070 0.930 45 H 0.067 0.933 46 H 0.010 0.990 47 H 0.008 0.992 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -7.590 20.003 13.649 25.377 hybrid contribution -0.732 -1.714 -1.213 2.224 sum -8.322 18.289 12.436 23.630 Atomic orbital electron populations 1.30334 1.23260 1.13593 1.13482 1.04167 0.79192 0.72588 0.72066 1.93559 1.79162 1.40002 1.86166 1.93568 1.80102 1.62540 1.63370 1.55425 1.74880 1.35418 1.22359 1.21471 1.00248 0.96066 0.83514 1.21838 1.01062 1.00481 0.92866 1.21663 0.95832 0.95203 0.89570 0.93605 1.21736 1.02147 0.92708 0.98474 1.21580 1.00151 0.99742 0.94066 1.21580 1.01098 0.93183 0.99227 1.22200 0.97680 0.96001 0.92102 1.61979 1.58287 1.02979 1.03185 1.22045 0.97703 0.87632 0.98680 1.21504 0.99707 0.95560 0.96470 1.18948 0.94785 0.91965 0.95265 1.21689 1.35579 0.93113 1.07672 0.92461 1.25958 0.95930 0.97694 1.00183 1.70089 1.44596 1.04422 1.38174 0.85479 0.78479 0.77924 0.79365 1.19838 1.20648 1.18801 0.83213 0.83639 0.83583 0.74430 0.89273 0.89488 0.91146 0.91370 0.89310 0.91801 0.90446 0.91762 0.91933 0.90628 0.91476 0.95407 0.90879 0.95898 0.92998 0.93268 0.99007 0.99152 0.92779 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -3.47 10.89 113.37 1.23 -2.24 16 2 S 2.62 38.85 6.10 -56.49 -0.34 38.51 16 3 O -1.00 -22.11 17.50 -127.65 -2.23 -24.34 16 4 O -1.01 -23.57 18.08 -127.65 -2.31 -25.87 16 5 N -1.12 -15.83 5.89 -187.49 -1.10 -16.93 16 6 C 0.11 1.51 5.74 86.38 0.50 2.01 16 7 C -0.12 -2.34 4.55 30.59 0.14 -2.20 16 8 C 0.09 1.76 1.92 44.94 0.09 1.85 16 9 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 10 C -0.11 -1.89 5.09 30.64 0.16 -1.73 16 11 C -0.12 -1.87 6.00 30.67 0.18 -1.69 16 12 C -0.11 -2.25 6.09 30.65 0.19 -2.06 16 13 C 0.05 1.24 5.03 86.33 0.43 1.67 16 14 N -0.54 -14.69 4.60 -871.10 -4.01 -18.69 16 15 C 0.07 2.22 4.45 86.30 0.38 2.61 16 16 C -0.09 -3.91 4.64 30.59 0.14 -3.76 16 17 C 0.03 1.48 4.97 29.85 0.15 1.63 16 18 C -0.54 -31.16 9.11 25.60 0.23 -30.93 16 19 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 20 C 0.00 0.00 5.46 84.65 0.46 0.47 16 21 N -0.93 -56.82 13.29 21.45 0.28 -56.53 16 22 Si 0.96 44.46 29.54 68.60 2.03 46.49 16 23 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.93 16 25 H -0.26 -11.64 7.11 99.48 0.71 -10.94 16 26 H 0.15 0.25 8.14 -2.39 -0.02 0.23 16 27 H 0.15 0.39 8.14 -2.39 -0.02 0.37 16 28 H 0.15 0.47 8.14 -2.39 -0.02 0.45 16 29 H 0.42 5.99 8.62 -96.75 -0.83 5.16 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.10 6.37 -2.39 -0.02 1.09 16 32 H 0.07 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.07 1.44 6.17 -2.39 -0.01 1.42 16 34 H 0.09 1.09 6.70 -2.38 -0.02 1.08 16 35 H 0.06 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.08 1.02 8.14 -2.39 -0.02 1.00 16 37 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.06 1.34 8.14 -2.39 -0.02 1.32 16 39 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 1.98 5.84 -2.38 -0.01 1.97 16 41 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.07 2.43 6.38 -2.39 -0.02 2.42 16 43 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 44 H 0.05 2.10 6.19 -2.39 -0.01 2.08 16 45 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 46 H -0.01 -0.48 8.14 -2.39 -0.02 -0.50 16 47 H -0.01 -0.56 8.14 -2.39 -0.02 -0.58 16 48 H 0.26 15.05 8.31 -92.71 -0.77 14.28 16 Total: -1.00 -77.93 382.82 -3.31 -81.24 By element: Atomic # 1 Polarization: 10.44 SS G_CDS: 0.09 Total: 10.53 kcal Atomic # 6 Polarization: -38.67 SS G_CDS: 4.29 Total: -34.39 kcal Atomic # 7 Polarization: -87.33 SS G_CDS: -4.83 Total: -92.16 kcal Atomic # 8 Polarization: -45.68 SS G_CDS: -4.54 Total: -50.22 kcal Atomic # 14 Polarization: 44.46 SS G_CDS: 2.03 Total: 46.49 kcal Atomic # 16 Polarization: 38.85 SS G_CDS: -0.34 Total: 38.51 kcal Total: -77.93 -3.31 -81.24 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336798171.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.677 kcal (2) G-P(sol) polarization free energy of solvation -77.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.307 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.237 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds