Wall clock time and date at job start Tue Mar 31 2020 12:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42091 * 110.54375 * 2 1 4 4 O 1.42105 * 110.53914 * 223.24819 * 2 1 3 5 5 N 1.65596 * 104.44912 * 111.62861 * 2 1 3 6 6 C 1.46502 * 120.00085 * 64.99539 * 5 2 1 7 7 C 1.53005 * 109.47002 * 164.99853 * 6 5 2 8 8 C 1.53002 * 109.47102 * 185.93785 * 7 6 5 9 9 H 1.08999 * 109.46341 * 54.87637 * 8 7 6 10 10 C 1.53040 * 109.45455 * 294.90383 * 8 7 6 11 11 C 1.53116 * 109.27862 * 180.81009 * 10 8 7 12 12 C 1.53116 * 109.16029 * 57.65733 * 11 10 8 13 13 C 1.53038 * 109.27797 * 302.34158 * 12 11 10 14 14 N 1.46847 * 109.46217 * 174.86010 * 8 7 6 15 15 C 1.46900 * 110.99710 * 305.84014 * 14 8 7 16 16 C 1.52996 * 109.47363 * 183.87275 * 15 14 8 17 17 C 1.53002 * 109.47597 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47271 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99823 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99681 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00399 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99679 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47164 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47166 * 119.99569 * 22 20 18 25 25 H 1.48504 * 109.47208 * 239.99769 * 22 20 18 26 26 H 1.09005 * 109.47079 * 308.37919 * 1 2 3 27 27 H 1.09006 * 109.47137 * 68.36974 * 1 2 3 28 28 H 1.09003 * 109.47512 * 188.37428 * 1 2 3 29 29 H 0.96997 * 119.99946 * 244.99827 * 5 2 1 30 30 H 1.09004 * 109.47431 * 45.00248 * 6 5 2 31 31 H 1.08997 * 109.47177 * 284.99722 * 6 5 2 32 32 H 1.09002 * 109.46921 * 65.94240 * 7 6 5 33 33 H 1.08998 * 109.47278 * 305.94049 * 7 6 5 34 34 H 1.08999 * 109.50491 * 300.75117 * 10 8 7 35 35 H 1.08999 * 109.49911 * 60.86907 * 10 8 7 36 36 H 1.09003 * 109.52253 * 297.75172 * 11 10 8 37 37 H 1.09004 * 109.57494 * 177.59252 * 11 10 8 38 38 H 1.08997 * 109.50291 * 182.40735 * 12 11 10 39 39 H 1.08999 * 109.50435 * 62.28484 * 12 11 10 40 40 H 1.09000 * 109.46467 * 299.17027 * 13 12 11 41 41 H 1.08997 * 109.46562 * 179.19422 * 13 12 11 42 42 H 1.09002 * 109.47500 * 303.87970 * 15 14 8 43 43 H 1.09003 * 109.46931 * 63.87605 * 15 14 8 44 44 H 1.09002 * 109.47380 * 300.00769 * 16 15 14 45 45 H 1.08997 * 109.47041 * 59.99885 * 16 15 14 46 46 H 1.09000 * 109.46493 * 300.00227 * 17 16 15 47 47 H 1.08990 * 109.47107 * 59.99716 * 17 16 15 48 48 H 0.96998 * 119.99877 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3305 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 1.8906 -1.9707 1.8507 7 6 2.6874 -2.3832 3.0900 8 6 2.4496 -3.8668 3.3788 9 1 2.6888 -4.4525 2.4912 10 6 0.9816 -4.0843 3.7527 11 6 0.7525 -5.5666 4.0604 12 6 1.6924 -5.9964 5.1902 13 6 3.1398 -5.7236 4.7746 14 7 3.3076 -4.2923 4.4919 15 6 4.7156 -3.9703 4.2240 16 6 5.5877 -4.5132 5.3578 17 6 7.0541 -4.1772 5.0792 18 6 7.9131 -4.7126 6.1957 19 1 7.4585 -5.2393 7.0217 20 6 9.2793 -4.5298 6.1627 21 7 9.8329 -3.8888 5.1567 22 14 10.3440 -5.1940 7.5464 23 1 9.4850 -5.8711 8.5507 24 1 11.3223 -6.1660 6.9953 25 1 11.0713 -4.0725 8.1934 26 1 -0.3633 0.6381 0.8056 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.6920 -0.0238 2.1255 30 1 2.1392 -2.6335 1.0218 31 1 0.8241 -2.0406 2.0646 32 1 2.3626 -1.7901 3.9449 33 1 3.7494 -2.2134 2.9124 34 1 0.7378 -3.4882 4.6321 35 1 0.3456 -3.7829 2.9203 36 1 0.9588 -6.1597 3.1694 37 1 -0.2817 -5.7201 4.3687 38 1 1.5644 -7.0612 5.3848 39 1 1.4599 -5.4304 6.0922 40 1 3.3759 -6.3005 3.8805 41 1 3.8108 -6.0152 5.5825 42 1 5.0197 -4.4259 3.2816 43 1 4.8351 -2.8887 4.1598 44 1 5.2836 -4.0576 6.3002 45 1 5.4682 -5.5947 5.4221 46 1 7.3584 -4.6327 4.1368 47 1 7.1732 -3.0958 5.0152 48 1 10.7941 -3.7606 5.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336798172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:40 Heat of formation + Delta-G solvation = -92.677305 kcal Electronic energy + Delta-G solvation = -25261.849612 eV Core-core repulsion = 21670.929143 eV Total energy + Delta-G solvation = -3590.920469 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -39.53051 -37.39587 -36.29640 -36.09718 -34.78085 -33.01399 -32.39260 -30.62572 -29.88125 -28.19422 -26.55266 -24.34353 -23.89313 -22.07591 -21.05873 -19.98008 -19.70960 -19.42977 -17.83347 -16.84531 -16.57726 -16.34489 -15.64747 -15.36449 -15.13480 -14.66684 -14.52797 -14.32472 -14.10577 -13.86933 -13.61230 -13.42801 -13.31984 -13.04795 -12.81564 -12.38546 -12.29031 -12.21285 -11.96062 -11.82190 -11.61490 -11.56943 -11.41986 -11.31448 -10.99594 -10.88344 -10.78537 -10.69075 -10.51316 -10.19104 -10.09213 -9.72358 -9.55767 -9.31082 -9.01171 -8.32753 -8.03319 -5.97748 -3.99889 -0.05413 2.40673 3.32347 3.39783 3.43865 3.50208 3.84766 4.01085 4.32787 4.47994 4.56608 4.61939 4.70519 4.72606 4.87635 4.94979 5.14430 5.17541 5.23525 5.27731 5.36061 5.38144 5.54847 5.59989 5.65896 5.73159 5.81673 5.85013 5.88102 5.92318 6.04283 6.08326 6.14187 6.22777 6.34583 6.37655 6.68507 6.72204 6.79717 7.11935 7.41028 7.41916 7.70383 7.85097 8.02616 8.45714 9.07580 9.64157 11.13680 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.002854 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.827710 B = 9807.670010 C =11839.469752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.675 4.675 2 S 2.615 3.385 3 O -0.960 6.960 4 O -0.956 6.956 5 N -1.118 6.118 6 C 0.114 3.886 7 C -0.126 4.126 8 C 0.086 3.914 9 H 0.041 0.959 10 C -0.113 4.113 11 C -0.121 4.121 12 C -0.117 4.117 13 C 0.050 3.950 14 N -0.532 5.532 15 C 0.052 3.948 16 C -0.109 4.109 17 C 0.022 3.978 18 C -0.518 4.518 19 H 0.055 0.945 20 C 0.055 3.945 21 N -0.895 5.895 22 Si 0.891 3.109 23 H -0.273 1.273 24 H -0.284 1.284 25 H -0.284 1.284 26 H 0.129 0.871 27 H 0.127 0.873 28 H 0.127 0.873 29 H 0.420 0.580 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.062 0.938 39 H 0.069 0.931 40 H 0.029 0.971 41 H 0.088 0.912 42 H 0.027 0.973 43 H 0.074 0.926 44 H 0.055 0.945 45 H 0.049 0.951 46 H 0.013 0.987 47 H 0.016 0.984 48 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.111 3.717 -7.746 26.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.707 3.293 3 O -0.950 6.950 4 O -0.946 6.946 5 N -0.879 5.879 6 C -0.012 4.012 7 C -0.165 4.165 8 C -0.023 4.023 9 H 0.059 0.941 10 C -0.151 4.151 11 C -0.159 4.159 12 C -0.155 4.155 13 C -0.078 4.078 14 N -0.257 5.257 15 C -0.075 4.075 16 C -0.147 4.147 17 C -0.016 4.016 18 C -0.556 4.556 19 H 0.073 0.927 20 C -0.145 4.145 21 N -0.535 5.535 22 Si 0.719 3.281 23 H -0.198 1.198 24 H -0.211 1.211 25 H -0.210 1.210 26 H 0.147 0.853 27 H 0.146 0.854 28 H 0.145 0.855 29 H 0.255 0.745 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.100 0.900 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.079 0.921 38 H 0.081 0.919 39 H 0.088 0.912 40 H 0.047 0.953 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.093 0.907 44 H 0.074 0.926 45 H 0.067 0.933 46 H 0.031 0.969 47 H 0.034 0.966 48 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.605 4.175 -8.217 26.274 hybrid contribution 0.486 -0.684 0.565 1.012 sum -24.118 3.491 -7.651 25.543 Atomic orbital electron populations 1.30545 1.28820 1.11547 1.11504 1.04682 0.77453 0.73844 0.73357 1.93626 1.77868 1.37783 1.85756 1.93630 1.76825 1.61785 1.62337 1.55544 1.74218 1.21512 1.36580 1.21396 0.99081 0.81481 0.99275 1.21903 1.01603 0.96213 0.96768 1.21550 0.93562 0.94529 0.92669 0.94122 1.21700 0.95034 0.96812 1.01540 1.21581 0.99227 0.96253 0.98830 1.21597 0.94586 1.00558 0.98717 1.22180 0.96879 0.88060 1.00676 1.62015 1.07449 1.16891 1.39381 1.22356 0.85705 1.00975 0.98419 1.21748 0.97095 0.99320 0.96538 1.19069 0.88743 0.96886 0.96873 1.21276 0.91758 1.35720 1.06858 0.92688 1.25030 0.98224 0.95379 0.95901 1.69975 1.10895 1.41966 1.30667 0.86556 0.80496 0.78712 0.82347 1.19759 1.21068 1.21028 0.85257 0.85438 0.85456 0.74480 0.90244 0.91760 0.90170 0.89958 0.90970 0.91901 0.92444 0.92148 0.91915 0.91197 0.95298 0.89399 0.95425 0.90748 0.92607 0.93275 0.96851 0.96605 0.93086 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -2.66 10.89 101.05 1.10 -1.56 16 2 S 2.62 21.05 6.10 -107.50 -0.66 20.39 16 3 O -0.96 -11.27 18.08 -57.54 -1.04 -12.31 16 4 O -0.96 -11.61 17.50 -57.54 -1.01 -12.61 16 5 N -1.12 -8.40 5.89 -10.61 -0.06 -8.46 16 6 C 0.11 0.87 5.74 -4.04 -0.02 0.85 16 7 C -0.13 -1.24 4.57 -26.73 -0.12 -1.36 16 8 C 0.09 0.96 1.91 -67.72 -0.13 0.83 16 9 H 0.04 0.48 8.14 -51.93 -0.42 0.06 16 10 C -0.11 -0.99 5.11 -26.65 -0.14 -1.13 16 11 C -0.12 -1.09 6.00 -26.61 -0.16 -1.25 16 12 C -0.12 -1.23 6.09 -26.65 -0.16 -1.39 16 13 C 0.05 0.66 5.04 -3.83 -0.02 0.64 16 14 N -0.53 -7.41 4.60 -226.68 -1.04 -8.45 16 15 C 0.05 0.88 4.45 -3.83 -0.02 0.86 16 16 C -0.11 -2.23 4.66 -26.73 -0.12 -2.35 16 17 C 0.02 0.57 4.97 -27.88 -0.14 0.43 16 18 C -0.52 -14.75 9.11 -34.44 -0.31 -15.07 16 19 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 20 C 0.06 1.61 5.46 -17.82 -0.10 1.51 16 21 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 22 Si 0.89 21.83 29.54 -169.99 -5.02 16.81 16 23 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 24 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 26 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 27 H 0.13 0.37 8.14 -51.92 -0.42 -0.05 16 28 H 0.13 0.34 8.14 -51.92 -0.42 -0.08 16 29 H 0.42 2.91 8.62 -34.47 -0.30 2.61 16 30 H 0.08 0.66 7.69 -51.93 -0.40 0.26 16 31 H 0.06 0.32 6.88 -51.93 -0.36 -0.04 16 32 H 0.08 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.96 6.11 -51.93 -0.32 0.65 16 34 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.06 0.42 6.75 -51.93 -0.35 0.07 16 36 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.03 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.09 1.29 5.84 -51.93 -0.30 0.99 16 42 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 43 H 0.07 1.24 6.34 -51.93 -0.33 0.91 16 44 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 45 H 0.05 0.99 6.19 -51.93 -0.32 0.66 16 46 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 47 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 48 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 382.90 15.07 5.77 5.77 Total: -1.00 -36.13 382.90 -11.22 -47.35 By element: Atomic # 1 Polarization: 5.54 SS G_CDS: -8.56 Total: -3.02 kcal Atomic # 6 Polarization: -18.65 SS G_CDS: -0.34 Total: -18.99 kcal Atomic # 7 Polarization: -43.01 SS G_CDS: -0.37 Total: -43.38 kcal Atomic # 8 Polarization: -22.88 SS G_CDS: -2.05 Total: -24.93 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.02 Total: 16.81 kcal Atomic # 16 Polarization: 21.05 SS G_CDS: -0.66 Total: 20.39 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -36.13 -11.22 -47.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336798172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.329 kcal (2) G-P(sol) polarization free energy of solvation -36.126 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.223 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.349 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds