Wall clock time and date at job start Tue Mar 31 2020 12:27:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81397 * 1 3 3 O 1.42091 * 110.54375 * 2 1 4 4 O 1.42105 * 110.53914 * 223.24819 * 2 1 3 5 5 N 1.65596 * 104.44912 * 111.62861 * 2 1 3 6 6 C 1.46502 * 120.00085 * 64.99539 * 5 2 1 7 7 C 1.53005 * 109.47002 * 164.99853 * 6 5 2 8 8 C 1.53002 * 109.47102 * 185.93785 * 7 6 5 9 9 H 1.08999 * 109.46341 * 54.87637 * 8 7 6 10 10 C 1.53040 * 109.45455 * 294.90383 * 8 7 6 11 11 C 1.53116 * 109.27862 * 180.81009 * 10 8 7 12 12 C 1.53116 * 109.16029 * 57.65733 * 11 10 8 13 13 C 1.53038 * 109.27797 * 302.34158 * 12 11 10 14 14 N 1.46847 * 109.46217 * 174.86010 * 8 7 6 15 15 C 1.46900 * 110.99710 * 305.84014 * 14 8 7 16 16 C 1.52996 * 109.47363 * 183.87275 * 15 14 8 17 17 C 1.53002 * 109.47597 * 180.02562 * 16 15 14 18 18 C 1.50700 * 109.47271 * 180.02562 * 17 16 15 19 19 H 1.07995 * 119.99823 * 359.97438 * 18 17 16 20 20 C 1.37875 * 119.99681 * 179.97438 * 18 17 16 21 21 N 1.31513 * 120.00399 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 119.99679 * 180.02562 * 20 18 17 23 23 H 1.48500 * 109.47164 * 359.97438 * 22 20 18 24 24 H 1.48503 * 109.47166 * 119.99569 * 22 20 18 25 25 H 1.48504 * 109.47208 * 239.99769 * 22 20 18 26 26 H 1.09005 * 109.47079 * 308.37919 * 1 2 3 27 27 H 1.09006 * 109.47137 * 68.36974 * 1 2 3 28 28 H 1.09003 * 109.47512 * 188.37428 * 1 2 3 29 29 H 0.96997 * 119.99946 * 244.99827 * 5 2 1 30 30 H 1.09004 * 109.47431 * 45.00248 * 6 5 2 31 31 H 1.08997 * 109.47177 * 284.99722 * 6 5 2 32 32 H 1.09002 * 109.46921 * 65.94240 * 7 6 5 33 33 H 1.08998 * 109.47278 * 305.94049 * 7 6 5 34 34 H 1.08999 * 109.50491 * 300.75117 * 10 8 7 35 35 H 1.08999 * 109.49911 * 60.86907 * 10 8 7 36 36 H 1.09003 * 109.52253 * 297.75172 * 11 10 8 37 37 H 1.09004 * 109.57494 * 177.59252 * 11 10 8 38 38 H 1.08997 * 109.50291 * 182.40735 * 12 11 10 39 39 H 1.08999 * 109.50435 * 62.28484 * 12 11 10 40 40 H 1.09000 * 109.46467 * 299.17027 * 13 12 11 41 41 H 1.08997 * 109.46562 * 179.19422 * 13 12 11 42 42 H 1.09002 * 109.47500 * 303.87970 * 15 14 8 43 43 H 1.09003 * 109.46931 * 63.87605 * 15 14 8 44 44 H 1.09002 * 109.47380 * 300.00769 * 16 15 14 45 45 H 1.08997 * 109.47041 * 59.99885 * 16 15 14 46 46 H 1.09000 * 109.46493 * 300.00227 * 17 16 15 47 47 H 1.08990 * 109.47107 * 59.99716 * 17 16 15 48 48 H 0.96998 * 119.99877 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3305 0.0000 4 8 2.3125 -0.9693 -0.9118 5 7 2.2272 -0.5911 1.4907 6 6 1.8906 -1.9707 1.8507 7 6 2.6874 -2.3832 3.0900 8 6 2.4496 -3.8668 3.3788 9 1 2.6888 -4.4525 2.4912 10 6 0.9816 -4.0843 3.7527 11 6 0.7525 -5.5666 4.0604 12 6 1.6924 -5.9964 5.1902 13 6 3.1398 -5.7236 4.7746 14 7 3.3076 -4.2923 4.4919 15 6 4.7156 -3.9703 4.2240 16 6 5.5877 -4.5132 5.3578 17 6 7.0541 -4.1772 5.0792 18 6 7.9131 -4.7126 6.1957 19 1 7.4585 -5.2393 7.0217 20 6 9.2793 -4.5298 6.1627 21 7 9.8329 -3.8888 5.1567 22 14 10.3440 -5.1940 7.5464 23 1 9.4850 -5.8711 8.5507 24 1 11.3223 -6.1660 6.9953 25 1 11.0713 -4.0725 8.1934 26 1 -0.3633 0.6381 0.8056 27 1 -0.3634 0.3788 -0.9553 28 1 -0.3634 -1.0167 0.1497 29 1 2.6920 -0.0238 2.1255 30 1 2.1392 -2.6335 1.0218 31 1 0.8241 -2.0406 2.0646 32 1 2.3626 -1.7901 3.9449 33 1 3.7494 -2.2134 2.9124 34 1 0.7378 -3.4882 4.6321 35 1 0.3456 -3.7829 2.9203 36 1 0.9588 -6.1597 3.1694 37 1 -0.2817 -5.7201 4.3687 38 1 1.5644 -7.0612 5.3848 39 1 1.4599 -5.4304 6.0922 40 1 3.3759 -6.3005 3.8805 41 1 3.8108 -6.0152 5.5825 42 1 5.0197 -4.4259 3.2816 43 1 4.8351 -2.8887 4.1598 44 1 5.2836 -4.0576 6.3002 45 1 5.4682 -5.5947 5.4221 46 1 7.3584 -4.6327 4.1368 47 1 7.1732 -3.0958 5.0152 48 1 10.7941 -3.7606 5.1333 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336798172.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:27:40 Heat of formation + Delta-G solvation = -120.542724 kcal Electronic energy + Delta-G solvation = -25263.057947 eV Core-core repulsion = 21670.929143 eV Total energy + Delta-G solvation = -3592.128804 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.51682 -38.16697 -37.06080 -36.89139 -36.25377 -34.71933 -33.33491 -32.25813 -30.24475 -29.01451 -28.27661 -25.64877 -24.83628 -23.57723 -21.90580 -21.43451 -20.64957 -20.21945 -18.56703 -18.43247 -17.54740 -17.22780 -16.77656 -16.38817 -16.24418 -16.01022 -15.93890 -15.26616 -14.99898 -14.61250 -14.49194 -14.44184 -14.00731 -13.91915 -13.77910 -13.63394 -13.45789 -13.24220 -13.18301 -13.08106 -12.77766 -12.72357 -12.59176 -12.39600 -12.34167 -12.21265 -11.93456 -11.84258 -11.60775 -11.45247 -11.39680 -11.25654 -10.96063 -10.87334 -10.56413 -10.30225 -9.20051 -8.21265 -6.32622 -0.63613 1.38801 1.39237 1.52827 1.81120 2.39787 2.90471 2.97627 3.11840 3.31281 3.83773 3.85948 3.94602 4.02941 4.12345 4.19351 4.22817 4.28640 4.34612 4.40054 4.43807 4.53739 4.61939 4.65797 4.72000 4.85270 4.88015 4.95410 5.00663 5.02922 5.06378 5.11020 5.16887 5.21646 5.22857 5.34107 5.35126 5.40114 5.50610 5.58885 5.72929 5.84225 6.09588 6.14696 6.26127 6.33242 6.84640 7.36855 8.90932 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.012005 B = 0.002854 C = 0.002364 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2331.827710 B = 9807.670010 C =11839.469752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.645 4.645 2 S 2.616 3.384 3 O -1.006 7.006 4 O -1.007 7.007 5 N -1.120 6.120 6 C 0.114 3.886 7 C -0.124 4.124 8 C 0.082 3.918 9 H 0.032 0.968 10 C -0.108 4.108 11 C -0.120 4.120 12 C -0.112 4.112 13 C 0.046 3.954 14 N -0.533 5.533 15 C 0.065 3.935 16 C -0.092 4.092 17 C 0.026 3.974 18 C -0.541 4.541 19 H 0.060 0.940 20 C -0.003 4.003 21 N -0.935 5.935 22 Si 0.966 3.034 23 H -0.261 1.261 24 H -0.278 1.278 25 H -0.277 1.277 26 H 0.152 0.848 27 H 0.144 0.856 28 H 0.152 0.848 29 H 0.421 0.579 30 H 0.070 0.930 31 H 0.106 0.894 32 H 0.087 0.913 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.094 0.906 36 H 0.057 0.943 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.067 0.933 40 H 0.021 0.979 41 H 0.067 0.933 42 H 0.014 0.986 43 H 0.073 0.927 44 H 0.053 0.947 45 H 0.051 0.949 46 H -0.014 1.014 47 H -0.009 1.009 48 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.393 3.256 -6.825 29.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.800 4.800 2 S 2.713 3.287 3 O -0.997 6.997 4 O -0.997 6.997 5 N -0.880 5.880 6 C -0.012 4.012 7 C -0.163 4.163 8 C -0.027 4.027 9 H 0.050 0.950 10 C -0.146 4.146 11 C -0.158 4.158 12 C -0.149 4.149 13 C -0.082 4.082 14 N -0.258 5.258 15 C -0.063 4.063 16 C -0.130 4.130 17 C -0.011 4.011 18 C -0.579 4.579 19 H 0.078 0.922 20 C -0.200 4.200 21 N -0.575 5.575 22 Si 0.791 3.209 23 H -0.185 1.185 24 H -0.204 1.204 25 H -0.203 1.203 26 H 0.171 0.829 27 H 0.163 0.837 28 H 0.170 0.830 29 H 0.256 0.744 30 H 0.088 0.912 31 H 0.124 0.876 32 H 0.106 0.894 33 H 0.072 0.928 34 H 0.093 0.907 35 H 0.113 0.887 36 H 0.075 0.925 37 H 0.101 0.899 38 H 0.092 0.908 39 H 0.086 0.914 40 H 0.040 0.960 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.091 0.909 44 H 0.072 0.928 45 H 0.070 0.930 46 H 0.004 0.996 47 H 0.009 0.991 48 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -27.857 3.707 -7.293 29.034 hybrid contribution 1.450 -0.542 0.254 1.568 sum -26.407 3.165 -7.039 27.512 Atomic orbital electron populations 1.30279 1.22175 1.13956 1.13574 1.04351 0.79685 0.72091 0.72547 1.93563 1.80315 1.39584 1.86199 1.93565 1.79512 1.62695 1.63968 1.55388 1.75013 1.21573 1.36070 1.21474 1.00924 0.81151 0.97649 1.21853 1.00403 0.95710 0.98315 1.21726 0.94791 0.94913 0.91277 0.94970 1.21723 0.93053 0.96894 1.02887 1.21600 0.99886 0.96228 0.98037 1.21573 0.92660 1.01367 0.99349 1.22229 0.98829 0.87505 0.99651 1.62030 1.05498 1.17416 1.40816 1.22055 0.87575 1.00498 0.96137 1.21485 0.94248 0.99572 0.97714 1.18965 0.92208 0.94833 0.95136 1.21704 0.92666 1.35946 1.07543 0.92219 1.26016 0.99828 0.95492 0.98680 1.70112 1.11460 1.43122 1.32802 0.85378 0.78407 0.78188 0.78947 1.18477 1.20359 1.20287 0.82923 0.83720 0.82989 0.74350 0.91209 0.87641 0.89412 0.92831 0.90704 0.88719 0.92451 0.89876 0.90797 0.91381 0.96044 0.91430 0.96794 0.90917 0.92781 0.93014 0.99598 0.99085 0.92786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.65 -2.49 10.89 113.37 1.23 -1.26 16 2 S 2.62 40.54 6.10 -56.49 -0.34 40.20 16 3 O -1.01 -24.15 18.08 -127.65 -2.31 -26.46 16 4 O -1.01 -24.98 17.50 -127.65 -2.23 -27.21 16 5 N -1.12 -15.95 5.89 -187.48 -1.10 -17.06 16 6 C 0.11 1.53 5.74 86.38 0.50 2.03 16 7 C -0.12 -2.35 4.57 30.60 0.14 -2.21 16 8 C 0.08 1.72 1.91 44.94 0.09 1.80 16 9 H 0.03 0.74 8.14 -2.39 -0.02 0.72 16 10 C -0.11 -1.53 5.11 30.65 0.16 -1.37 16 11 C -0.12 -1.76 6.00 30.67 0.18 -1.57 16 12 C -0.11 -2.14 6.09 30.65 0.19 -1.96 16 13 C 0.05 1.21 5.04 86.33 0.43 1.64 16 14 N -0.53 -14.81 4.60 -871.09 -4.01 -18.82 16 15 C 0.07 2.30 4.45 86.30 0.38 2.68 16 16 C -0.09 -3.93 4.66 30.59 0.14 -3.79 16 17 C 0.03 1.43 4.97 29.85 0.15 1.58 16 18 C -0.54 -31.61 9.11 25.60 0.23 -31.38 16 19 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 20 C 0.00 -0.16 5.46 84.65 0.46 0.30 16 21 N -0.93 -58.34 13.29 21.45 0.28 -58.06 16 22 Si 0.97 45.15 29.54 68.60 2.03 47.18 16 23 H -0.26 -11.58 7.11 99.48 0.71 -10.87 16 24 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 25 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 26 H 0.15 0.05 8.14 -2.39 -0.02 0.03 16 27 H 0.14 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 29 H 0.42 5.83 8.62 -96.75 -0.83 5.00 16 30 H 0.07 1.09 7.69 -2.39 -0.02 1.07 16 31 H 0.11 0.56 6.88 -2.39 -0.02 0.54 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.05 1.32 6.11 -2.39 -0.01 1.30 16 34 H 0.07 1.08 8.14 -2.39 -0.02 1.06 16 35 H 0.09 0.78 6.75 -2.39 -0.02 0.76 16 36 H 0.06 0.86 8.14 -2.39 -0.02 0.85 16 37 H 0.08 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 39 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 40 H 0.02 0.59 8.14 -2.39 -0.02 0.57 16 41 H 0.07 2.03 5.84 -2.39 -0.01 2.02 16 42 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 43 H 0.07 2.58 6.34 -2.39 -0.02 2.57 16 44 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 45 H 0.05 2.15 6.19 -2.39 -0.01 2.14 16 46 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 47 H -0.01 -0.54 8.14 -2.39 -0.02 -0.56 16 48 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 Total: -1.00 -82.04 382.90 -3.30 -85.35 By element: Atomic # 1 Polarization: 8.28 SS G_CDS: 0.09 Total: 8.37 kcal Atomic # 6 Polarization: -37.78 SS G_CDS: 4.29 Total: -33.49 kcal Atomic # 7 Polarization: -89.11 SS G_CDS: -4.82 Total: -93.93 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -4.54 Total: -53.66 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Atomic # 16 Polarization: 40.54 SS G_CDS: -0.34 Total: 40.20 kcal Total: -82.04 -3.30 -85.35 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336798172.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.196 kcal (2) G-P(sol) polarization free energy of solvation -82.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.543 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds