Wall clock time and date at job start Tue Mar 31 2020 12:20:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47031 * 2 1 4 4 C 1.46500 * 119.99966 * 274.99889 * 3 2 1 5 5 C 1.50696 * 109.46975 * 279.78208 * 4 3 2 6 6 H 1.08001 * 120.00307 * 4.90861 * 5 4 3 7 7 C 1.37884 * 119.99825 * 184.91090 * 5 4 3 8 8 N 1.31512 * 119.99730 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47585 * 59.99253 * 9 7 5 11 11 H 1.48498 * 109.47212 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46768 * 299.99104 * 9 7 5 13 13 S 1.65606 * 120.00022 * 95.00153 * 3 2 1 14 14 O 1.42098 * 106.40076 * 145.07413 * 13 3 2 15 15 O 1.42096 * 106.40199 * 12.15113 * 13 3 2 16 16 N 1.65596 * 107.21532 * 258.61669 * 13 3 2 17 17 C 1.46502 * 120.00431 * 61.25621 * 16 13 3 18 18 H 1.09003 * 109.46977 * 18.44412 * 17 16 13 19 19 C 1.53002 * 109.47271 * 258.44121 * 17 16 13 20 20 C 1.52992 * 109.47229 * 299.99825 * 19 17 16 21 21 C 1.52997 * 109.47265 * 300.00021 * 20 19 17 22 22 C 1.53002 * 109.47014 * 59.99847 * 21 20 19 23 23 H 1.08997 * 109.46853 * 60.00521 * 22 21 20 24 24 C 1.53008 * 109.46698 * 180.02562 * 22 21 20 25 25 C 1.52992 * 109.47229 * 300.00175 * 22 21 20 26 26 H 1.09005 * 109.47225 * 300.00163 * 25 22 21 27 27 C 1.53006 * 109.46956 * 180.02562 * 25 22 21 28 28 H 1.08994 * 109.47222 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47198 * 299.99780 * 1 2 3 31 31 H 1.08999 * 109.47198 * 240.00220 * 2 1 3 32 32 H 1.09002 * 109.47514 * 119.99632 * 2 1 3 33 33 H 1.08999 * 109.46894 * 39.78212 * 4 3 2 34 34 H 1.09000 * 109.47327 * 159.78053 * 4 3 2 35 35 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00143 * 241.25893 * 16 13 3 37 37 H 1.08997 * 109.46853 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.46709 * 60.00116 * 19 17 16 39 39 H 1.09005 * 109.47044 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.47225 * 59.99837 * 20 19 17 41 41 H 1.09003 * 109.47010 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.46799 * 299.99610 * 21 20 19 43 43 H 1.08991 * 109.46997 * 60.00199 * 24 22 21 44 44 H 1.08997 * 109.46620 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.47165 * 300.00055 * 24 22 21 46 46 H 1.08994 * 109.47208 * 60.00356 * 27 25 22 47 47 H 1.09009 * 109.46771 * 180.02562 * 27 25 22 48 48 H 1.08997 * 109.46597 * 299.99637 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4417 1.6996 -1.9395 6 1 4.0490 0.9141 -1.5147 7 6 3.8406 2.3283 -3.1000 8 7 3.1008 3.2845 -3.6175 9 14 5.4311 1.8207 -3.9378 10 1 5.3565 0.3862 -4.3143 11 1 5.6319 2.6425 -5.1583 12 1 6.5694 2.0297 -3.0071 13 16 2.4122 2.1203 1.4287 14 8 3.5173 2.9690 1.1501 15 8 2.4472 1.0966 2.4136 16 7 1.1496 3.1133 1.8312 17 6 -0.1811 2.5477 2.0665 18 1 -0.0928 1.4780 2.2567 19 6 -1.0576 2.7758 0.8334 20 6 -1.1816 4.2772 0.5665 21 6 -1.8189 4.9597 1.7785 22 6 -0.9424 4.7315 3.0116 23 1 0.0476 5.1525 2.8365 24 6 -1.5801 5.4136 4.2238 25 6 -0.8184 3.2302 3.2785 26 1 -1.8085 2.8092 3.4536 27 6 0.0576 3.0021 4.5121 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3149 1.8741 -1.9134 34 1 2.1773 3.1804 -1.0661 35 1 3.3817 3.7271 -4.4338 36 1 1.2911 4.0696 1.9112 37 1 -2.0476 2.3546 1.0083 38 1 -0.6036 2.2895 -0.0300 39 1 -1.8057 4.4397 -0.3123 40 1 -0.1915 4.6981 0.3915 41 1 -1.9076 6.0293 1.5881 42 1 -2.8090 4.5388 1.9535 43 1 -2.5700 4.9923 4.3986 44 1 -0.9554 5.2514 5.1022 45 1 -1.6688 6.4833 4.0339 46 1 -0.3968 3.4882 5.3753 47 1 0.1463 1.9324 4.7019 48 1 1.0477 3.4231 4.3373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336884639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:30 Heat of formation + Delta-G solvation = -102.885257 kcal Electronic energy + Delta-G solvation = -27810.123948 eV Core-core repulsion = 24218.760829 eV Total energy + Delta-G solvation = -3591.363119 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -39.71929 -36.57654 -36.04822 -35.11086 -34.09395 -32.91477 -32.62507 -30.32959 -29.85955 -27.12232 -26.55987 -25.44509 -23.17222 -22.12084 -21.65225 -20.76613 -19.72441 -18.35759 -17.36288 -16.70335 -16.30990 -15.82442 -15.37666 -14.87893 -14.78650 -14.36262 -14.26672 -14.01203 -13.75201 -13.24042 -13.10814 -12.89621 -12.56604 -12.18043 -12.08201 -12.04029 -11.89237 -11.73018 -11.67759 -11.63579 -11.43416 -11.39781 -11.29580 -11.02383 -10.92092 -10.83189 -10.74763 -10.50262 -10.42363 -10.35145 -10.20948 -9.97253 -9.85150 -9.72818 -9.09464 -8.42669 -8.03265 -6.04659 -4.07866 1.32556 3.34646 3.38272 3.42934 3.57285 4.19277 4.46404 4.58500 4.64129 4.68731 5.01445 5.07123 5.15949 5.28911 5.30410 5.39732 5.44396 5.45968 5.46339 5.57421 5.59780 5.65811 5.74037 5.76053 5.77182 5.82918 5.89357 5.96425 6.05196 6.05538 6.08275 6.20818 6.27434 6.29915 6.38102 6.40113 6.46170 6.57443 6.65068 6.68417 7.21011 7.31173 7.46420 7.67978 7.93714 8.24139 8.94378 9.57151 11.03840 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.004689 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.277803 B = 5969.791022 C = 6307.132727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.118 3.882 3 N -0.991 5.991 4 C 0.262 3.738 5 C -0.527 4.527 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.895 3.105 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.275 1.275 13 S 2.779 3.221 14 O -0.970 6.970 15 O -1.001 7.001 16 N -1.123 6.123 17 C 0.159 3.841 18 H 0.089 0.911 19 C -0.144 4.144 20 C -0.118 4.118 21 C -0.113 4.113 22 C -0.089 4.089 23 H 0.071 0.929 24 C -0.148 4.148 25 C -0.087 4.087 26 H 0.077 0.923 27 C -0.150 4.150 28 H 0.063 0.937 29 H 0.058 0.942 30 H 0.056 0.944 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.030 0.970 34 H 0.037 0.963 35 H 0.263 0.737 36 H 0.410 0.590 37 H 0.066 0.934 38 H 0.084 0.916 39 H 0.061 0.939 40 H 0.068 0.932 41 H 0.059 0.941 42 H 0.059 0.941 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.051 0.949 46 H 0.055 0.945 47 H 0.057 0.943 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.028 0.620 12.386 17.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.009 4.009 3 N -0.833 5.833 4 C 0.140 3.860 5 C -0.566 4.566 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.536 5.536 9 Si 0.723 3.277 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.201 1.201 13 S 2.787 3.213 14 O -0.954 6.954 15 O -0.984 6.984 16 N -0.882 5.882 17 C 0.051 3.949 18 H 0.107 0.893 19 C -0.183 4.183 20 C -0.156 4.156 21 C -0.151 4.151 22 C -0.107 4.107 23 H 0.089 0.911 24 C -0.205 4.205 25 C -0.107 4.107 26 H 0.096 0.904 27 C -0.207 4.207 28 H 0.082 0.918 29 H 0.077 0.923 30 H 0.075 0.925 31 H 0.102 0.898 32 H 0.093 0.907 33 H 0.048 0.952 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.103 0.897 39 H 0.080 0.920 40 H 0.086 0.914 41 H 0.077 0.923 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.070 0.930 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -12.244 0.429 12.714 17.656 hybrid contribution 0.564 0.328 -0.872 1.089 sum -11.681 0.757 11.842 16.651 Atomic orbital electron populations 1.22564 0.97521 1.01633 1.02225 1.21123 0.93070 0.83330 1.03375 1.57686 1.81108 1.21309 1.23149 1.18954 0.97010 0.91032 0.78986 1.21458 1.06931 1.19956 1.08281 0.92209 1.24919 0.97160 0.94797 0.97087 1.69906 1.38228 1.24174 1.21247 0.86598 0.83946 0.78431 0.78708 1.20233 1.21245 1.20053 1.01983 0.73196 0.73104 0.73039 1.93639 1.48947 1.67912 1.84880 1.93514 1.86992 1.58567 1.59351 1.56213 1.23610 1.21398 1.86971 1.20797 0.82355 0.97412 0.94287 0.89277 1.22243 0.99709 0.97280 0.99061 1.21464 1.01509 0.95335 0.97255 1.21608 0.98662 1.00183 0.94597 1.21156 0.99590 0.95016 0.94963 0.91082 1.21881 1.00579 1.00055 0.97958 1.21382 0.99264 0.95460 0.94624 0.90423 1.21880 1.00019 1.01968 0.96830 0.91778 0.92316 0.92527 0.89813 0.90661 0.95197 0.94497 0.92718 0.75582 0.91502 0.89714 0.92016 0.91366 0.92258 0.92234 0.92887 0.92419 0.92961 0.92617 0.92372 0.92441 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.45 8.87 37.16 0.33 -2.12 16 2 C 0.12 2.01 6.31 -4.04 -0.03 1.98 16 3 N -0.99 -19.87 2.84 -115.66 -0.33 -20.20 16 4 C 0.26 6.34 5.18 -5.20 -0.03 6.32 16 5 C -0.53 -14.58 9.33 -34.44 -0.32 -14.90 16 6 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -25.91 13.29 55.43 0.74 -25.17 16 9 Si 0.90 21.82 29.54 -169.99 -5.02 16.80 16 10 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 S 2.78 54.44 5.92 -107.50 -0.64 53.80 16 14 O -0.97 -23.40 17.46 -57.17 -1.00 -24.39 16 15 O -1.00 -20.28 16.07 -57.17 -0.92 -21.20 16 16 N -1.12 -16.67 4.12 -4.89 -0.02 -16.69 16 17 C 0.16 1.97 2.21 -67.93 -0.15 1.82 16 18 H 0.09 1.14 5.67 -51.93 -0.29 0.84 16 19 C -0.14 -1.70 4.50 -26.73 -0.12 -1.82 16 20 C -0.12 -1.38 5.75 -26.74 -0.15 -1.53 16 21 C -0.11 -1.10 5.20 -26.73 -0.14 -1.24 16 22 C -0.09 -0.86 2.05 -90.62 -0.19 -1.05 16 23 H 0.07 0.75 6.56 -51.93 -0.34 0.41 16 24 C -0.15 -1.23 8.84 37.16 0.33 -0.90 16 25 C -0.09 -0.90 2.07 -90.62 -0.19 -1.09 16 26 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 27 C -0.15 -1.61 8.68 37.16 0.32 -1.29 16 28 H 0.06 0.91 7.32 -51.93 -0.38 0.52 16 29 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.06 0.70 3.82 -51.93 -0.20 0.50 16 31 H 0.08 1.48 8.10 -51.93 -0.42 1.06 16 32 H 0.08 1.24 6.88 -51.93 -0.36 0.89 16 33 H 0.03 0.73 8.10 -51.93 -0.42 0.31 16 34 H 0.04 0.96 7.77 -51.93 -0.40 0.55 16 35 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.41 5.63 6.61 -34.47 -0.23 5.41 16 37 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.16 5.64 -51.93 -0.29 0.86 16 39 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.07 0.91 7.28 -51.93 -0.38 0.53 16 41 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 42 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 43 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.06 0.47 6.43 -51.93 -0.33 0.14 16 45 H 0.05 0.42 8.14 -51.93 -0.42 -0.01 16 46 H 0.05 0.51 6.43 -51.93 -0.33 0.17 16 47 H 0.06 0.66 8.14 -51.92 -0.42 0.23 16 48 H 0.06 0.68 7.61 -51.93 -0.39 0.29 16 LS Contribution 368.60 15.07 5.55 5.55 Total: -1.00 -32.28 368.60 -10.18 -42.47 By element: Atomic # 1 Polarization: 11.33 SS G_CDS: -8.13 Total: 3.20 kcal Atomic # 6 Polarization: -13.75 SS G_CDS: -0.43 Total: -14.17 kcal Atomic # 7 Polarization: -62.45 SS G_CDS: 0.39 Total: -62.06 kcal Atomic # 8 Polarization: -43.67 SS G_CDS: -1.92 Total: -45.59 kcal Atomic # 14 Polarization: 21.82 SS G_CDS: -5.02 Total: 16.80 kcal Atomic # 16 Polarization: 54.44 SS G_CDS: -0.64 Total: 53.80 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.28 -10.18 -42.47 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.420 kcal (2) G-P(sol) polarization free energy of solvation -32.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds