Wall clock time and date at job start Tue Mar 31 2020 12:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.47031 * 2 1 4 4 C 1.46500 * 119.99966 * 274.99889 * 3 2 1 5 5 C 1.50696 * 109.46975 * 279.78208 * 4 3 2 6 6 H 1.08001 * 120.00307 * 4.90861 * 5 4 3 7 7 C 1.37884 * 119.99825 * 184.91090 * 5 4 3 8 8 N 1.31512 * 119.99730 * 359.97438 * 7 5 4 9 9 Si 1.86799 * 119.99931 * 180.02562 * 7 5 4 10 10 H 1.48492 * 109.47585 * 59.99253 * 9 7 5 11 11 H 1.48498 * 109.47212 * 179.97438 * 9 7 5 12 12 H 1.48509 * 109.46768 * 299.99104 * 9 7 5 13 13 S 1.65606 * 120.00022 * 95.00153 * 3 2 1 14 14 O 1.42098 * 106.40076 * 145.07413 * 13 3 2 15 15 O 1.42096 * 106.40199 * 12.15113 * 13 3 2 16 16 N 1.65596 * 107.21532 * 258.61669 * 13 3 2 17 17 C 1.46502 * 120.00431 * 61.25621 * 16 13 3 18 18 H 1.09003 * 109.46977 * 18.44412 * 17 16 13 19 19 C 1.53002 * 109.47271 * 258.44121 * 17 16 13 20 20 C 1.52992 * 109.47229 * 299.99825 * 19 17 16 21 21 C 1.52997 * 109.47265 * 300.00021 * 20 19 17 22 22 C 1.53002 * 109.47014 * 59.99847 * 21 20 19 23 23 H 1.08997 * 109.46853 * 60.00521 * 22 21 20 24 24 C 1.53008 * 109.46698 * 180.02562 * 22 21 20 25 25 C 1.52992 * 109.47229 * 300.00175 * 22 21 20 26 26 H 1.09005 * 109.47225 * 300.00163 * 25 22 21 27 27 C 1.53006 * 109.46956 * 180.02562 * 25 22 21 28 28 H 1.08994 * 109.47222 * 59.99794 * 1 2 3 29 29 H 1.09000 * 109.46818 * 180.02562 * 1 2 3 30 30 H 1.08999 * 109.47198 * 299.99780 * 1 2 3 31 31 H 1.08999 * 109.47198 * 240.00220 * 2 1 3 32 32 H 1.09002 * 109.47514 * 119.99632 * 2 1 3 33 33 H 1.08999 * 109.46894 * 39.78212 * 4 3 2 34 34 H 1.09000 * 109.47327 * 159.78053 * 4 3 2 35 35 H 0.97006 * 119.99800 * 179.97438 * 8 7 5 36 36 H 0.97002 * 120.00143 * 241.25893 * 16 13 3 37 37 H 1.08997 * 109.46853 * 179.97438 * 19 17 16 38 38 H 1.09001 * 109.46709 * 60.00116 * 19 17 16 39 39 H 1.09005 * 109.47044 * 179.97438 * 20 19 17 40 40 H 1.09005 * 109.47225 * 59.99837 * 20 19 17 41 41 H 1.09003 * 109.47010 * 180.02562 * 21 20 19 42 42 H 1.08999 * 109.46799 * 299.99610 * 21 20 19 43 43 H 1.08991 * 109.46997 * 60.00199 * 24 22 21 44 44 H 1.08997 * 109.46620 * 180.02562 * 24 22 21 45 45 H 1.09003 * 109.47165 * 300.00055 * 24 22 21 46 46 H 1.08994 * 109.47208 * 60.00356 * 27 25 22 47 47 H 1.09009 * 109.46771 * 180.02562 * 27 25 22 48 48 H 1.08997 * 109.46597 * 299.99637 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4417 1.6996 -1.9395 6 1 4.0490 0.9141 -1.5147 7 6 3.8406 2.3283 -3.1000 8 7 3.1008 3.2845 -3.6175 9 14 5.4311 1.8207 -3.9378 10 1 5.3565 0.3862 -4.3143 11 1 5.6319 2.6425 -5.1583 12 1 6.5694 2.0297 -3.0071 13 16 2.4122 2.1203 1.4287 14 8 3.5173 2.9690 1.1501 15 8 2.4472 1.0966 2.4136 16 7 1.1496 3.1133 1.8312 17 6 -0.1811 2.5477 2.0665 18 1 -0.0928 1.4780 2.2567 19 6 -1.0576 2.7758 0.8334 20 6 -1.1816 4.2772 0.5665 21 6 -1.8189 4.9597 1.7785 22 6 -0.9424 4.7315 3.0116 23 1 0.0476 5.1525 2.8365 24 6 -1.5801 5.4136 4.2238 25 6 -0.8184 3.2302 3.2785 26 1 -1.8085 2.8092 3.4536 27 6 0.0576 3.0021 4.5121 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.3149 1.8741 -1.9134 34 1 2.1773 3.1804 -1.0661 35 1 3.3817 3.7271 -4.4338 36 1 1.2911 4.0696 1.9112 37 1 -2.0476 2.3546 1.0083 38 1 -0.6036 2.2895 -0.0300 39 1 -1.8057 4.4397 -0.3123 40 1 -0.1915 4.6981 0.3915 41 1 -1.9076 6.0293 1.5881 42 1 -2.8090 4.5388 1.9535 43 1 -2.5700 4.9923 4.3986 44 1 -0.9554 5.2514 5.1022 45 1 -1.6688 6.4833 4.0339 46 1 -0.3968 3.4882 5.3753 47 1 0.1463 1.9324 4.7019 48 1 1.0477 3.4231 4.3373 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336884639.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:28 Heat of formation + Delta-G solvation = -124.170146 kcal Electronic energy + Delta-G solvation = -27811.046930 eV Core-core repulsion = 24218.760829 eV Total energy + Delta-G solvation = -3592.286101 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.06 seconds Orbital eigenvalues (eV) -40.64605 -38.24883 -37.67725 -36.82980 -35.14066 -34.67911 -33.78405 -31.64633 -31.07536 -28.50854 -27.92901 -26.29662 -24.94198 -23.40198 -22.81300 -21.67918 -20.84156 -19.69440 -18.93210 -18.36283 -18.22782 -17.24303 -16.80556 -16.23381 -15.87080 -15.78645 -15.34546 -15.08672 -14.94819 -14.65876 -14.44340 -14.11823 -13.83035 -13.61084 -13.49768 -13.26511 -13.13511 -13.07003 -12.97117 -12.88562 -12.76384 -12.71813 -12.61869 -12.57226 -12.40288 -12.16069 -12.06794 -11.93660 -11.73043 -11.62651 -11.59531 -11.27268 -11.10354 -10.76002 -10.58013 -10.22717 -9.74988 -8.18801 -6.29470 -0.25025 1.38694 1.42141 1.48962 2.06730 2.41335 2.67250 3.12502 3.51735 3.70412 3.79189 3.86256 4.00780 4.16442 4.25330 4.34260 4.49451 4.50816 4.55562 4.60857 4.62510 4.67863 4.76288 4.77864 4.84264 4.95228 5.04405 5.05650 5.08579 5.15747 5.18483 5.20713 5.23164 5.26402 5.35628 5.41101 5.43604 5.49554 5.53391 5.59128 5.61448 5.71091 5.74788 5.94551 6.13654 6.21543 6.78701 7.38964 8.88298 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018069 B = 0.004689 C = 0.004438 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1549.277803 B = 5969.791022 C = 6307.132727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.109 3.891 3 N -0.994 5.994 4 C 0.282 3.718 5 C -0.548 4.548 6 H 0.051 0.949 7 C 0.014 3.986 8 N -0.923 5.923 9 Si 0.952 3.048 10 H -0.264 1.264 11 H -0.277 1.277 12 H -0.280 1.280 13 S 2.793 3.207 14 O -1.021 7.021 15 O -1.007 7.007 16 N -1.109 6.109 17 C 0.152 3.848 18 H 0.089 0.911 19 C -0.142 4.142 20 C -0.120 4.120 21 C -0.106 4.106 22 C -0.089 4.089 23 H 0.056 0.944 24 C -0.143 4.143 25 C -0.081 4.081 26 H 0.102 0.898 27 C -0.152 4.152 28 H 0.056 0.944 29 H 0.086 0.914 30 H 0.069 0.931 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.026 0.974 34 H 0.014 0.986 35 H 0.266 0.734 36 H 0.416 0.584 37 H 0.094 0.906 38 H 0.064 0.936 39 H 0.061 0.939 40 H 0.042 0.958 41 H 0.062 0.938 42 H 0.077 0.923 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.051 0.949 48 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.904 0.075 13.343 20.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.159 3.841 5 C -0.587 4.587 6 H 0.070 0.930 7 C -0.186 4.186 8 N -0.563 5.563 9 Si 0.778 3.222 10 H -0.188 1.188 11 H -0.202 1.202 12 H -0.206 1.206 13 S 2.801 3.199 14 O -1.005 7.005 15 O -0.991 6.991 16 N -0.872 5.872 17 C 0.045 3.955 18 H 0.107 0.893 19 C -0.181 4.181 20 C -0.158 4.158 21 C -0.143 4.143 22 C -0.108 4.108 23 H 0.074 0.926 24 C -0.201 4.201 25 C -0.101 4.101 26 H 0.120 0.880 27 C -0.209 4.209 28 H 0.075 0.925 29 H 0.104 0.896 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.099 0.901 33 H 0.044 0.956 34 H 0.032 0.968 35 H 0.075 0.925 36 H 0.252 0.748 37 H 0.112 0.888 38 H 0.082 0.918 39 H 0.080 0.920 40 H 0.061 0.939 41 H 0.081 0.919 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.077 0.923 45 H 0.073 0.927 46 H 0.094 0.906 47 H 0.070 0.930 48 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -14.129 -0.141 13.678 19.666 hybrid contribution 1.103 0.491 -1.110 1.640 sum -13.026 0.349 12.568 18.104 Atomic orbital electron populations 1.22487 0.94481 1.03527 1.02536 1.21360 0.95673 0.81542 1.03126 1.57544 1.81620 1.22524 1.21793 1.18459 0.95459 0.90001 0.80215 1.21835 1.08180 1.19876 1.08825 0.93035 1.25694 1.00222 0.94869 0.97797 1.69997 1.39677 1.24956 1.21678 0.85698 0.79877 0.78889 0.77779 1.18820 1.20239 1.20566 1.01318 0.73097 0.72741 0.72745 1.93564 1.52277 1.69138 1.85549 1.93497 1.87322 1.59021 1.59220 1.55818 1.23863 1.21195 1.86315 1.21107 0.80939 0.97601 0.95840 0.89300 1.22224 1.00709 0.97299 0.97821 1.21464 1.00377 0.95441 0.98489 1.21558 0.99134 1.00269 0.93360 1.21159 0.99120 0.94714 0.95832 0.92569 1.21842 1.01048 1.00150 0.97019 1.21382 0.99956 0.95685 0.93029 0.87969 1.21908 0.99424 1.01663 0.97915 0.92462 0.89566 0.91246 0.90889 0.90076 0.95602 0.96830 0.92503 0.74829 0.88751 0.91763 0.91991 0.93887 0.91939 0.90473 0.91615 0.92285 0.92673 0.90600 0.92957 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.39 8.87 71.98 0.64 -3.76 16 2 C 0.11 3.68 6.31 86.38 0.55 4.22 16 3 N -0.99 -40.68 2.84 -519.85 -1.48 -42.15 16 4 C 0.28 14.11 5.18 85.63 0.44 14.55 16 5 C -0.55 -31.06 9.33 25.60 0.24 -30.82 16 6 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 7 C 0.01 0.78 5.46 84.66 0.46 1.24 16 8 N -0.92 -54.22 13.29 21.45 0.28 -53.94 16 9 Si 0.95 45.02 29.54 68.60 2.03 47.04 16 10 H -0.26 -11.81 7.11 99.48 0.71 -11.10 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 12 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 13 S 2.79 111.83 5.92 -56.49 -0.33 111.49 16 14 O -1.02 -51.26 17.46 -128.00 -2.23 -53.50 16 15 O -1.01 -40.81 16.07 -128.00 -2.06 -42.86 16 16 N -1.11 -33.16 4.12 -169.38 -0.70 -33.85 16 17 C 0.15 3.53 2.21 44.99 0.10 3.63 16 18 H 0.09 2.10 5.67 -2.39 -0.01 2.09 16 19 C -0.14 -3.12 4.50 30.59 0.14 -2.99 16 20 C -0.12 -2.69 5.75 30.59 0.18 -2.52 16 21 C -0.11 -1.81 5.20 30.59 0.16 -1.66 16 22 C -0.09 -1.56 2.05 -10.79 -0.02 -1.58 16 23 H 0.06 1.15 6.56 -2.39 -0.02 1.13 16 24 C -0.14 -1.97 8.84 71.98 0.64 -1.34 16 25 C -0.08 -1.46 2.07 -10.80 -0.02 -1.48 16 26 H 0.10 1.44 8.14 -2.38 -0.02 1.42 16 27 C -0.15 -2.98 8.68 71.98 0.63 -2.36 16 28 H 0.06 1.56 7.32 -2.39 -0.02 1.54 16 29 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 30 H 0.07 1.58 3.82 -2.39 -0.01 1.57 16 31 H 0.07 2.60 8.10 -2.39 -0.02 2.58 16 32 H 0.08 2.64 6.88 -2.39 -0.02 2.62 16 33 H 0.03 1.30 8.10 -2.39 -0.02 1.29 16 34 H 0.01 0.74 7.77 -2.39 -0.02 0.72 16 35 H 0.27 14.78 8.31 -92.70 -0.77 14.01 16 36 H 0.42 11.75 6.61 -96.74 -0.64 11.11 16 37 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 38 H 0.06 1.71 5.64 -2.39 -0.01 1.70 16 39 H 0.06 1.37 8.14 -2.38 -0.02 1.35 16 40 H 0.04 1.17 7.28 -2.38 -0.02 1.15 16 41 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 42 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 43 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 44 H 0.06 0.80 6.43 -2.39 -0.02 0.79 16 45 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 46 H 0.08 1.18 6.43 -2.39 -0.02 1.16 16 47 H 0.05 1.08 8.14 -2.38 -0.02 1.06 16 48 H 0.04 0.91 7.61 -2.39 -0.02 0.89 16 Total: -1.00 -70.27 368.60 -0.07 -70.33 By element: Atomic # 1 Polarization: 21.98 SS G_CDS: 0.30 Total: 22.28 kcal Atomic # 6 Polarization: -28.96 SS G_CDS: 4.12 Total: -24.85 kcal Atomic # 7 Polarization: -128.06 SS G_CDS: -1.89 Total: -129.94 kcal Atomic # 8 Polarization: -92.07 SS G_CDS: -4.29 Total: -96.36 kcal Atomic # 14 Polarization: 45.02 SS G_CDS: 2.03 Total: 47.04 kcal Atomic # 16 Polarization: 111.83 SS G_CDS: -0.33 Total: 111.49 kcal Total: -70.27 -0.07 -70.33 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884639.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.836 kcal (2) G-P(sol) polarization free energy of solvation -70.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.334 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.06 seconds