Wall clock time and date at job start Tue Mar 31 2020 12:20:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46497 * 109.47363 * 2 1 4 4 C 1.46506 * 119.99833 * 275.00213 * 3 2 1 5 5 C 1.50704 * 109.46986 * 279.34418 * 4 3 2 6 6 H 1.08001 * 119.99993 * 4.89686 * 5 4 3 7 7 C 1.37879 * 120.00140 * 184.89247 * 5 4 3 8 8 N 1.31519 * 119.99760 * 5.13332 * 7 5 4 9 9 Si 1.86794 * 120.00258 * 185.13652 * 7 5 4 10 10 H 1.48505 * 109.47208 * 5.00197 * 9 7 5 11 11 H 1.48497 * 109.47484 * 125.00050 * 9 7 5 12 12 H 1.48500 * 109.47109 * 245.00527 * 9 7 5 13 13 S 1.65600 * 120.00257 * 95.00205 * 3 2 1 14 14 O 1.42104 * 106.40331 * 144.46001 * 13 3 2 15 15 O 1.42097 * 106.40175 * 11.53893 * 13 3 2 16 16 N 1.65605 * 107.21584 * 258.00138 * 13 3 2 17 17 C 1.46495 * 120.00052 * 61.50274 * 16 13 3 18 18 H 1.09003 * 109.47100 * 18.58890 * 17 16 13 19 19 C 1.53002 * 109.46871 * 258.59259 * 17 16 13 20 20 C 1.53004 * 109.46996 * 180.02562 * 19 17 16 21 21 C 1.52998 * 109.47369 * 59.99893 * 20 19 17 22 22 C 1.53002 * 109.46781 * 300.00084 * 21 20 19 23 23 H 1.09007 * 109.47146 * 180.02562 * 22 21 20 24 24 C 1.53001 * 109.47365 * 299.99867 * 22 21 20 25 25 C 1.52998 * 109.47331 * 60.00139 * 22 21 20 26 26 H 1.09000 * 109.47363 * 59.99677 * 25 22 21 27 27 C 1.53002 * 109.47331 * 179.97438 * 25 22 21 28 28 H 1.09003 * 109.47103 * 60.00043 * 1 2 3 29 29 H 1.08994 * 109.47595 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47318 * 300.00394 * 1 2 3 31 31 H 1.09001 * 109.46855 * 239.99732 * 2 1 3 32 32 H 1.09002 * 109.47510 * 120.00306 * 2 1 3 33 33 H 1.08991 * 109.47455 * 39.34471 * 4 3 2 34 34 H 1.09003 * 109.47190 * 159.34966 * 4 3 2 35 35 H 0.97000 * 119.99907 * 180.02562 * 8 7 5 36 36 H 0.96999 * 119.99617 * 241.50281 * 16 13 3 37 37 H 1.09003 * 109.46957 * 299.99719 * 19 17 16 38 38 H 1.08997 * 109.47669 * 60.00061 * 19 17 16 39 39 H 1.09004 * 109.47170 * 180.02562 * 20 19 17 40 40 H 1.09003 * 109.46773 * 299.99507 * 20 19 17 41 41 H 1.08991 * 109.47165 * 59.99941 * 21 20 19 42 42 H 1.09002 * 109.46933 * 180.02562 * 21 20 19 43 43 H 1.09007 * 109.46781 * 60.00031 * 24 22 21 44 44 H 1.08995 * 109.47249 * 180.02562 * 24 22 21 45 45 H 1.09002 * 109.47423 * 300.00389 * 24 22 21 46 46 H 1.08997 * 109.47455 * 179.97438 * 27 25 22 47 47 H 1.09003 * 109.46682 * 300.00166 * 27 25 22 48 48 H 1.09000 * 109.47160 * 59.99553 * 27 25 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 6 3.4469 1.7074 -1.9345 6 1 4.0578 0.9263 -1.5067 7 6 3.8459 2.3375 -3.0941 8 7 3.1559 3.3556 -3.5602 9 14 5.3664 1.7452 -4.0033 10 1 5.8898 0.5202 -3.3470 11 1 5.0126 1.4390 -5.4126 12 1 6.4056 2.8055 -3.9730 13 16 2.4123 2.1202 1.4286 14 8 3.5266 2.9579 1.1532 15 8 2.4331 1.0988 2.4163 16 7 1.1571 3.1260 1.8226 17 6 -0.1788 2.5728 2.0582 18 1 -0.0994 1.5040 2.2574 19 6 -1.0495 2.7976 0.8204 20 6 -2.4449 2.2203 1.0667 21 6 -3.0803 2.9182 2.2709 22 6 -2.2095 2.6933 3.5086 23 1 -2.6625 3.1902 4.3667 24 6 -2.0987 1.1933 3.7886 25 6 -0.8142 3.2707 3.2624 26 1 -0.8932 4.3394 3.0629 27 6 0.0564 3.0464 4.5004 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8899 31 1 1.8932 -0.5139 -0.8900 32 1 1.8933 -0.5139 0.8899 33 1 1.3190 1.8681 -1.9164 34 1 2.1697 3.1806 -1.0669 35 1 3.4364 3.7986 -4.3763 36 1 1.3064 4.0815 1.8973 37 1 -1.1288 3.8663 0.6212 38 1 -0.5967 2.3007 -0.0376 39 1 -3.0651 2.3801 0.1847 40 1 -2.3659 1.1516 1.2661 41 1 -3.1593 3.9868 2.0715 42 1 -4.0742 2.5066 2.4466 43 1 -1.6460 0.6961 2.9307 44 1 -1.4787 1.0331 4.6706 45 1 -3.0927 0.7819 3.9641 46 1 1.0505 3.4573 4.3248 47 1 -0.3966 3.5439 5.3580 48 1 0.1353 1.9778 4.7003 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336884640.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:32 Heat of formation + Delta-G solvation = -123.839172 kcal Electronic energy + Delta-G solvation = -27865.639492 eV Core-core repulsion = 24273.367743 eV Total energy + Delta-G solvation = -3592.271749 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75026 -38.25228 -37.68577 -36.84989 -35.52573 -34.72230 -33.66851 -31.55272 -30.62789 -28.52297 -28.10150 -26.44728 -24.95537 -23.34123 -23.04191 -22.13668 -20.41414 -19.59853 -18.86064 -18.38571 -18.00664 -17.58909 -16.94923 -16.23435 -15.94589 -15.71442 -15.16759 -15.14207 -14.83808 -14.70885 -14.50846 -14.37345 -13.82504 -13.60658 -13.43033 -13.30109 -13.25640 -13.16252 -13.04193 -12.85391 -12.82028 -12.76067 -12.62294 -12.45827 -12.35332 -12.14924 -12.11216 -11.95339 -11.72561 -11.67121 -11.52808 -11.19989 -11.12605 -10.79040 -10.58189 -10.23877 -9.76634 -8.19724 -6.29811 -0.27625 1.38179 1.40599 1.51960 2.03480 2.41152 2.64321 3.11294 3.49974 3.63962 3.82241 3.90108 3.98960 4.21140 4.23005 4.29648 4.45890 4.48377 4.49129 4.52739 4.55152 4.66189 4.75416 4.80945 4.83252 4.95392 4.98423 5.03607 5.11527 5.14883 5.19311 5.20129 5.22820 5.28311 5.33629 5.37820 5.45228 5.48208 5.53017 5.55373 5.60056 5.73347 5.74164 5.93392 6.12672 6.20574 6.78546 7.38496 8.88036 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.020348 B = 0.004551 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1375.743762 B = 6150.752009 C = 6536.305907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.108 3.892 3 N -0.994 5.994 4 C 0.279 3.721 5 C -0.546 4.546 6 H 0.052 0.948 7 C 0.013 3.987 8 N -0.924 5.924 9 Si 0.955 3.045 10 H -0.269 1.269 11 H -0.270 1.270 12 H -0.282 1.282 13 S 2.792 3.208 14 O -1.019 7.019 15 O -1.007 7.007 16 N -1.115 6.115 17 C 0.152 3.848 18 H 0.087 0.913 19 C -0.146 4.146 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.079 4.079 23 H 0.087 0.913 24 C -0.160 4.160 25 C -0.086 4.086 26 H 0.081 0.919 27 C -0.152 4.152 28 H 0.058 0.942 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.027 0.973 34 H 0.015 0.985 35 H 0.266 0.734 36 H 0.419 0.581 37 H 0.065 0.935 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.052 0.948 44 H 0.055 0.945 45 H 0.068 0.932 46 H 0.041 0.959 47 H 0.072 0.928 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 -2.473 13.173 20.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.017 4.017 3 N -0.835 5.835 4 C 0.156 3.844 5 C -0.586 4.586 6 H 0.070 0.930 7 C -0.187 4.187 8 N -0.564 5.564 9 Si 0.780 3.220 10 H -0.193 1.193 11 H -0.196 1.196 12 H -0.208 1.208 13 S 2.800 3.200 14 O -1.003 7.003 15 O -0.990 6.990 16 N -0.876 5.876 17 C 0.046 3.954 18 H 0.105 0.895 19 C -0.185 4.185 20 C -0.155 4.155 21 C -0.149 4.149 22 C -0.098 4.098 23 H 0.105 0.895 24 C -0.217 4.217 25 C -0.106 4.106 26 H 0.100 0.900 27 C -0.210 4.210 28 H 0.077 0.923 29 H 0.106 0.894 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.045 0.955 34 H 0.033 0.967 35 H 0.075 0.925 36 H 0.253 0.747 37 H 0.084 0.916 38 H 0.082 0.918 39 H 0.088 0.912 40 H 0.090 0.910 41 H 0.083 0.917 42 H 0.096 0.904 43 H 0.071 0.929 44 H 0.074 0.926 45 H 0.087 0.913 46 H 0.060 0.940 47 H 0.091 0.909 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.120 -2.697 13.520 20.462 hybrid contribution 1.056 0.541 -1.077 1.603 sum -14.065 -2.156 12.443 18.902 Atomic orbital electron populations 1.22516 0.94598 1.03561 1.02495 1.21364 0.95586 0.81556 1.03218 1.57547 1.81610 1.22533 1.21811 1.18515 0.95541 0.90123 0.80265 1.21875 1.07808 1.19994 1.08889 0.92994 1.25716 1.00000 0.94695 0.98270 1.70021 1.41586 1.21822 1.22967 0.85560 0.79392 0.78476 0.78573 1.19298 1.19555 1.20840 1.01343 0.73059 0.72788 0.72770 1.93570 1.51588 1.69591 1.85577 1.93497 1.87366 1.59093 1.59052 1.55837 1.23764 1.21430 1.86532 1.21135 0.80377 0.98136 0.95738 0.89484 1.22230 0.96489 1.02210 0.97560 1.21570 0.94406 1.00621 0.98895 1.21585 0.98792 1.00841 0.93703 1.21112 0.93484 0.96507 0.98721 0.89487 1.22071 1.02348 0.95633 1.01637 1.21409 0.95362 1.00434 0.93422 0.90044 1.21910 0.99254 1.02081 0.97720 0.92343 0.89431 0.91519 0.90645 0.90124 0.95516 0.96697 0.92484 0.74662 0.91623 0.91780 0.91248 0.91002 0.91706 0.90404 0.92905 0.92566 0.91317 0.94025 0.90884 0.92685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.53 8.89 71.98 0.64 -3.89 16 2 C 0.11 3.71 6.31 86.38 0.55 4.25 16 3 N -0.99 -41.06 2.84 -519.85 -1.47 -42.53 16 4 C 0.28 13.99 5.18 85.63 0.44 14.43 16 5 C -0.55 -30.99 9.33 25.60 0.24 -30.75 16 6 H 0.05 2.97 7.82 -2.91 -0.02 2.95 16 7 C 0.01 0.71 5.45 84.65 0.46 1.18 16 8 N -0.92 -54.32 13.29 21.45 0.28 -54.04 16 9 Si 0.95 44.91 29.54 68.60 2.03 46.93 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 12 H -0.28 -13.21 7.11 99.48 0.71 -12.50 16 13 S 2.79 113.13 5.92 -56.49 -0.33 112.79 16 14 O -1.02 -51.41 17.49 -128.00 -2.24 -53.65 16 15 O -1.01 -41.26 16.05 -128.00 -2.05 -43.32 16 16 N -1.11 -33.95 4.71 -169.39 -0.80 -34.75 16 17 C 0.15 3.74 1.61 44.99 0.07 3.82 16 18 H 0.09 2.25 3.97 -2.39 -0.01 2.24 16 19 C -0.15 -3.41 4.59 30.60 0.14 -3.27 16 20 C -0.12 -2.05 5.54 30.60 0.17 -1.88 16 21 C -0.11 -1.58 5.45 30.59 0.17 -1.42 16 22 C -0.08 -1.19 2.72 -10.79 -0.03 -1.22 16 23 H 0.09 1.09 8.14 -2.38 -0.02 1.07 16 24 C -0.16 -2.47 8.15 71.98 0.59 -1.89 16 25 C -0.09 -1.66 2.17 -10.79 -0.02 -1.69 16 26 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 27 C -0.15 -3.13 8.68 71.98 0.63 -2.50 16 28 H 0.06 1.61 7.33 -2.39 -0.02 1.59 16 29 H 0.09 1.79 8.14 -2.39 -0.02 1.78 16 30 H 0.07 1.61 3.05 -2.39 -0.01 1.60 16 31 H 0.08 2.68 8.11 -2.39 -0.02 2.67 16 32 H 0.08 2.66 6.88 -2.39 -0.02 2.64 16 33 H 0.03 1.34 8.10 -2.39 -0.02 1.32 16 34 H 0.02 0.82 7.78 -2.39 -0.02 0.80 16 35 H 0.27 14.71 8.31 -92.71 -0.77 13.94 16 36 H 0.42 11.53 8.90 -96.75 -0.86 10.67 16 37 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 38 H 0.06 1.77 5.65 -2.39 -0.01 1.76 16 39 H 0.07 1.16 8.14 -2.38 -0.02 1.14 16 40 H 0.07 1.20 5.64 -2.39 -0.01 1.19 16 41 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 43 H 0.05 0.92 4.81 -2.38 -0.01 0.91 16 44 H 0.06 0.91 6.43 -2.39 -0.02 0.89 16 45 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 46 H 0.04 0.97 7.60 -2.39 -0.02 0.95 16 47 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 48 H 0.05 1.20 6.43 -2.39 -0.02 1.19 16 Total: -1.00 -70.40 365.34 -0.46 -70.85 By element: Atomic # 1 Polarization: 22.42 SS G_CDS: 0.10 Total: 22.52 kcal Atomic # 6 Polarization: -28.85 SS G_CDS: 4.04 Total: -24.82 kcal Atomic # 7 Polarization: -129.33 SS G_CDS: -1.99 Total: -131.32 kcal Atomic # 8 Polarization: -92.67 SS G_CDS: -4.29 Total: -96.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.93 kcal Atomic # 16 Polarization: 113.13 SS G_CDS: -0.33 Total: 112.79 kcal Total: -70.40 -0.46 -70.85 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884640.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.984 kcal (2) G-P(sol) polarization free energy of solvation -70.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.855 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds