Wall clock time and date at job start Tue Mar 31 2020 12:20:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47301 * 2 1 4 4 C 1.46500 * 120.00066 * 275.00630 * 3 2 1 5 5 C 1.50700 * 109.46515 * 279.38143 * 4 3 2 6 6 H 1.07998 * 120.00706 * 5.04537 * 5 4 3 7 7 C 1.37884 * 119.99722 * 185.04907 * 5 4 3 8 8 N 1.31518 * 119.99773 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00037 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47043 * 90.00205 * 9 7 5 11 11 H 1.48492 * 109.47260 * 210.00223 * 9 7 5 12 12 H 1.48501 * 109.47112 * 330.00266 * 9 7 5 13 13 S 1.65605 * 119.99765 * 94.99818 * 3 2 1 14 14 O 1.42097 * 106.39970 * 144.48827 * 13 3 2 15 15 O 1.42093 * 106.40275 * 11.56911 * 13 3 2 16 16 N 1.65599 * 107.21857 * 258.02764 * 13 3 2 17 17 C 1.46497 * 119.99999 * 61.45412 * 16 13 3 18 18 H 1.09005 * 109.47157 * 18.51062 * 17 16 13 19 19 C 1.53000 * 109.47429 * 258.51325 * 17 16 13 20 20 C 1.52996 * 109.47398 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46918 * 60.00073 * 20 19 17 22 22 C 1.53001 * 109.47131 * 299.99607 * 21 20 19 23 23 H 1.08995 * 109.47061 * 300.00207 * 22 21 20 24 24 C 1.53002 * 109.47131 * 179.97438 * 22 21 20 25 25 C 1.52999 * 109.47238 * 138.50917 * 17 16 13 26 26 H 1.09004 * 109.46862 * 60.00784 * 25 17 16 27 27 C 1.52997 * 109.47517 * 300.00279 * 25 17 16 28 28 H 1.08998 * 109.47407 * 300.00121 * 1 2 3 29 29 H 1.09000 * 109.47254 * 59.99828 * 1 2 3 30 30 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47083 * 240.00520 * 2 1 3 32 32 H 1.09000 * 109.47254 * 120.00172 * 2 1 3 33 33 H 1.08994 * 109.47160 * 39.38177 * 4 3 2 34 34 H 1.08998 * 109.47055 * 159.38673 * 4 3 2 35 35 H 0.97004 * 119.99654 * 179.97438 * 8 7 5 36 36 H 0.96993 * 119.99998 * 241.45538 * 16 13 3 37 37 H 1.09005 * 109.46736 * 299.99995 * 19 17 16 38 38 H 1.08997 * 109.47082 * 59.99595 * 19 17 16 39 39 H 1.08995 * 109.47407 * 299.99785 * 20 19 17 40 40 H 1.09000 * 109.47339 * 179.97438 * 20 19 17 41 41 H 1.09010 * 109.46954 * 180.02562 * 21 20 19 42 42 H 1.08995 * 109.47653 * 60.00084 * 21 20 19 43 43 H 1.08997 * 109.47004 * 60.00026 * 24 22 21 44 44 H 1.09000 * 109.46683 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.47285 * 300.00116 * 24 22 21 46 46 H 1.09005 * 109.46797 * 299.99805 * 27 25 17 47 47 H 1.08996 * 109.46889 * 59.99308 * 27 25 17 48 48 H 1.08997 * 109.47355 * 179.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4463 1.7069 -1.9348 6 1 4.0558 0.9237 -1.5087 7 6 3.8469 2.3391 -3.0928 8 7 4.9708 1.9880 -3.6786 9 14 2.7925 3.6933 -3.8303 10 1 3.2047 5.0039 -3.2668 11 1 2.9691 3.7107 -5.3046 12 1 1.3654 3.4418 -3.5057 13 16 2.4121 2.1202 1.4288 14 8 3.5260 2.9584 1.1532 15 8 2.4336 1.0987 2.4162 16 7 1.1567 3.1255 1.8231 17 6 -0.1792 2.5717 2.0578 18 1 -0.0999 1.5026 2.2547 19 6 -1.0502 2.7991 0.8206 20 6 -2.4451 2.2203 1.0655 21 6 -3.0809 2.9147 2.2715 22 6 -2.2100 2.6872 3.5087 23 1 -2.1303 1.6181 3.7053 24 6 -2.8455 3.3822 4.7145 25 6 -0.8147 3.2666 3.2637 26 1 -0.8941 4.3357 3.0667 27 6 0.0562 3.0392 4.5008 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.3185 1.8687 -1.9161 34 1 2.1703 3.1807 -1.0666 35 1 5.2524 2.4326 -4.4935 36 1 1.3057 4.0809 1.8986 37 1 -1.1295 3.8683 0.6237 38 1 -0.5974 2.3041 -0.0384 39 1 -2.3654 1.1512 1.2621 40 1 -3.0657 2.3827 0.1843 41 1 -4.0746 2.5020 2.4462 42 1 -3.1606 3.9838 2.0749 43 1 -3.8394 2.9703 4.8891 44 1 -2.2247 3.2205 5.5958 45 1 -2.9247 4.4514 4.5176 46 1 0.1355 1.9700 4.6978 47 1 1.0501 3.4511 4.3262 48 1 -0.3963 3.5346 5.3598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336884642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:38 Heat of formation + Delta-G solvation = -101.031437 kcal Electronic energy + Delta-G solvation = -27666.771918 eV Core-core repulsion = 24075.489186 eV Total energy + Delta-G solvation = -3591.282732 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -39.66931 -36.66409 -36.20834 -35.20507 -34.64353 -33.21205 -32.55182 -30.36453 -29.96142 -27.21369 -27.00471 -25.57594 -22.98241 -21.76675 -21.63104 -21.03577 -20.11329 -18.65476 -17.36795 -16.96592 -16.61819 -16.12629 -15.32691 -14.90368 -14.81218 -14.57488 -14.32037 -14.20701 -13.77635 -13.44643 -13.00247 -12.87301 -12.73888 -12.49402 -12.32002 -12.07736 -12.03194 -11.90335 -11.86084 -11.69586 -11.55509 -11.51007 -11.40019 -11.16824 -11.05186 -10.92268 -10.89350 -10.59850 -10.48713 -10.45878 -10.31928 -10.19978 -10.07888 -9.55056 -9.20460 -8.58952 -8.12459 -6.08020 -4.06711 1.19064 3.25723 3.31065 3.32949 3.44027 4.07773 4.37942 4.44486 4.55413 4.60085 4.85813 4.97036 4.98764 5.14183 5.21837 5.25890 5.30823 5.33073 5.37556 5.41271 5.49117 5.56872 5.61928 5.66645 5.68047 5.78464 5.81144 5.82383 5.86874 5.93847 5.97991 6.05804 6.13717 6.16708 6.20513 6.29955 6.34308 6.42346 6.49907 6.57914 6.74984 7.04917 7.19122 7.46863 7.59151 8.50055 8.98201 9.51416 11.05657 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004814 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.432733 B = 5814.555381 C = 6279.779819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.117 3.883 3 N -0.985 5.985 4 C 0.232 3.768 5 C -0.529 4.529 6 H 0.079 0.921 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.871 3.129 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.779 3.221 14 O -0.966 6.966 15 O -0.994 6.994 16 N -1.128 6.128 17 C 0.158 3.842 18 H 0.091 0.909 19 C -0.148 4.148 20 C -0.118 4.118 21 C -0.115 4.115 22 C -0.086 4.086 23 H 0.072 0.928 24 C -0.148 4.148 25 C -0.088 4.088 26 H 0.074 0.926 27 C -0.150 4.150 28 H 0.057 0.943 29 H 0.062 0.938 30 H 0.061 0.939 31 H 0.087 0.913 32 H 0.079 0.921 33 H 0.031 0.969 34 H 0.025 0.975 35 H 0.264 0.736 36 H 0.411 0.589 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.061 0.939 42 H 0.061 0.939 43 H 0.052 0.948 44 H 0.058 0.942 45 H 0.053 0.947 46 H 0.058 0.942 47 H 0.056 0.944 48 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.493 1.637 13.203 22.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.009 4.009 3 N -0.826 5.826 4 C 0.109 3.891 5 C -0.568 4.568 6 H 0.097 0.903 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.697 3.303 10 H -0.199 1.199 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.787 3.213 14 O -0.950 6.950 15 O -0.978 6.978 16 N -0.885 5.885 17 C 0.051 3.949 18 H 0.108 0.892 19 C -0.187 4.187 20 C -0.156 4.156 21 C -0.153 4.153 22 C -0.106 4.106 23 H 0.091 0.909 24 C -0.205 4.205 25 C -0.108 4.108 26 H 0.092 0.908 27 C -0.207 4.207 28 H 0.076 0.924 29 H 0.081 0.919 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.097 0.903 33 H 0.048 0.952 34 H 0.043 0.957 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.071 0.929 44 H 0.077 0.923 45 H 0.072 0.928 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -17.565 1.345 13.528 22.211 hybrid contribution -0.662 1.300 -0.849 1.688 sum -18.227 2.645 12.678 22.359 Atomic orbital electron populations 1.22594 0.97463 1.01856 1.02184 1.21169 0.92991 0.82889 1.03898 1.57467 1.81291 1.21520 1.22328 1.19341 0.98071 0.90625 0.81100 1.21374 1.05302 1.21580 1.08578 0.90321 1.24878 0.94840 0.96604 0.96655 1.69898 1.21709 1.42207 1.19511 0.86944 0.81290 0.83251 0.78766 1.19880 1.20992 1.18998 1.02039 0.73082 0.73170 0.73047 1.93654 1.48094 1.68384 1.84843 1.93527 1.86900 1.58521 1.58835 1.56249 1.23607 1.21550 1.87127 1.20831 0.81698 0.98122 0.94251 0.89157 1.22268 0.95350 1.02233 0.98810 1.21526 0.95874 1.00220 0.98006 1.21629 0.98331 1.00840 0.94455 1.21170 0.93990 1.00391 0.95011 0.90923 1.21875 1.00297 1.00448 0.97871 1.21426 0.94351 1.00296 0.94776 0.90752 1.21883 0.99706 1.02296 0.96855 0.92389 0.91934 0.92048 0.89420 0.90307 0.95151 0.95728 0.92560 0.75614 0.91461 0.89891 0.91626 0.91708 0.92062 0.91985 0.92863 0.92281 0.92816 0.92270 0.92448 0.92526 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.36 8.89 37.15 0.33 -2.03 16 2 C 0.12 1.96 6.31 -4.04 -0.03 1.93 16 3 N -0.98 -19.34 2.84 -115.67 -0.33 -19.66 16 4 C 0.23 5.29 4.24 -5.19 -0.02 5.27 16 5 C -0.53 -14.89 9.89 -34.44 -0.34 -15.23 16 6 H 0.08 2.43 8.06 -52.49 -0.42 2.01 16 7 C 0.07 2.10 5.47 -17.82 -0.10 2.00 16 8 N -0.89 -27.46 13.96 55.43 0.77 -26.69 16 9 Si 0.87 20.95 27.37 -169.99 -4.65 16.30 16 10 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 11 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 12 H -0.27 -5.88 6.69 56.52 0.38 -5.50 16 13 S 2.78 53.42 5.91 -107.50 -0.64 52.78 16 14 O -0.97 -22.95 17.49 -57.18 -1.00 -23.95 16 15 O -0.99 -19.92 16.06 -57.18 -0.92 -20.84 16 16 N -1.13 -15.98 4.71 -4.89 -0.02 -16.01 16 17 C 0.16 1.88 1.88 -67.93 -0.13 1.75 16 18 H 0.09 1.14 5.67 -51.93 -0.29 0.84 16 19 C -0.15 -1.63 4.59 -26.73 -0.12 -1.76 16 20 C -0.12 -1.06 5.82 -26.73 -0.16 -1.22 16 21 C -0.12 -0.92 5.20 -26.73 -0.14 -1.05 16 22 C -0.09 -0.72 2.25 -90.59 -0.20 -0.93 16 23 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 24 C -0.15 -1.07 8.84 37.16 0.33 -0.74 16 25 C -0.09 -0.87 1.93 -90.59 -0.17 -1.04 16 26 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 27 C -0.15 -1.56 8.68 37.16 0.32 -1.24 16 28 H 0.06 0.69 3.04 -51.93 -0.16 0.53 16 29 H 0.06 0.82 7.34 -51.93 -0.38 0.44 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.09 1.54 8.11 -51.93 -0.42 1.12 16 32 H 0.08 1.29 6.88 -51.93 -0.36 0.93 16 33 H 0.03 0.66 7.51 -51.93 -0.39 0.27 16 34 H 0.02 0.56 6.94 -51.93 -0.36 0.20 16 35 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 36 H 0.41 5.10 8.90 -34.47 -0.31 4.79 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.08 1.05 5.67 -51.93 -0.29 0.75 16 39 H 0.07 0.58 7.34 -51.93 -0.38 0.19 16 40 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.06 0.44 8.14 -51.92 -0.42 0.01 16 42 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.42 6.43 -51.93 -0.33 0.09 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 46 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 47 H 0.06 0.65 7.60 -51.93 -0.39 0.26 16 48 H 0.06 0.49 6.43 -51.93 -0.33 0.16 16 LS Contribution 368.89 15.07 5.56 5.56 Total: -1.00 -33.75 368.89 -9.87 -43.62 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -8.22 Total: 3.16 kcal Atomic # 6 Polarization: -13.85 SS G_CDS: -0.43 Total: -14.28 kcal Atomic # 7 Polarization: -62.78 SS G_CDS: 0.42 Total: -62.36 kcal Atomic # 8 Polarization: -42.86 SS G_CDS: -1.92 Total: -44.78 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.65 Total: 16.30 kcal Atomic # 16 Polarization: 53.42 SS G_CDS: -0.64 Total: 52.78 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -33.75 -9.87 -43.62 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.412 kcal (2) G-P(sol) polarization free energy of solvation -33.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.870 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.620 kcal (6) G-S(sol) free energy of system = (1) + (5) -101.031 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds