Wall clock time and date at job start Tue Mar 31 2020 12:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46504 * 109.47301 * 2 1 4 4 C 1.46500 * 120.00066 * 275.00630 * 3 2 1 5 5 C 1.50700 * 109.46515 * 279.38143 * 4 3 2 6 6 H 1.07998 * 120.00706 * 5.04537 * 5 4 3 7 7 C 1.37884 * 119.99722 * 185.04907 * 5 4 3 8 8 N 1.31518 * 119.99773 * 180.02562 * 7 5 4 9 9 Si 1.86799 * 120.00037 * 359.97438 * 7 5 4 10 10 H 1.48500 * 109.47043 * 90.00205 * 9 7 5 11 11 H 1.48492 * 109.47260 * 210.00223 * 9 7 5 12 12 H 1.48501 * 109.47112 * 330.00266 * 9 7 5 13 13 S 1.65605 * 119.99765 * 94.99818 * 3 2 1 14 14 O 1.42097 * 106.39970 * 144.48827 * 13 3 2 15 15 O 1.42093 * 106.40275 * 11.56911 * 13 3 2 16 16 N 1.65599 * 107.21857 * 258.02764 * 13 3 2 17 17 C 1.46497 * 119.99999 * 61.45412 * 16 13 3 18 18 H 1.09005 * 109.47157 * 18.51062 * 17 16 13 19 19 C 1.53000 * 109.47429 * 258.51325 * 17 16 13 20 20 C 1.52996 * 109.47398 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46918 * 60.00073 * 20 19 17 22 22 C 1.53001 * 109.47131 * 299.99607 * 21 20 19 23 23 H 1.08995 * 109.47061 * 300.00207 * 22 21 20 24 24 C 1.53002 * 109.47131 * 179.97438 * 22 21 20 25 25 C 1.52999 * 109.47238 * 138.50917 * 17 16 13 26 26 H 1.09004 * 109.46862 * 60.00784 * 25 17 16 27 27 C 1.52997 * 109.47517 * 300.00279 * 25 17 16 28 28 H 1.08998 * 109.47407 * 300.00121 * 1 2 3 29 29 H 1.09000 * 109.47254 * 59.99828 * 1 2 3 30 30 H 1.08998 * 109.47113 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47083 * 240.00520 * 2 1 3 32 32 H 1.09000 * 109.47254 * 120.00172 * 2 1 3 33 33 H 1.08994 * 109.47160 * 39.38177 * 4 3 2 34 34 H 1.08998 * 109.47055 * 159.38673 * 4 3 2 35 35 H 0.97004 * 119.99654 * 179.97438 * 8 7 5 36 36 H 0.96993 * 119.99998 * 241.45538 * 16 13 3 37 37 H 1.09005 * 109.46736 * 299.99995 * 19 17 16 38 38 H 1.08997 * 109.47082 * 59.99595 * 19 17 16 39 39 H 1.08995 * 109.47407 * 299.99785 * 20 19 17 40 40 H 1.09000 * 109.47339 * 179.97438 * 20 19 17 41 41 H 1.09010 * 109.46954 * 180.02562 * 21 20 19 42 42 H 1.08995 * 109.47653 * 60.00084 * 21 20 19 43 43 H 1.08997 * 109.47004 * 60.00026 * 24 22 21 44 44 H 1.09000 * 109.46683 * 180.02562 * 24 22 21 45 45 H 1.09005 * 109.47285 * 300.00116 * 24 22 21 46 46 H 1.09005 * 109.46797 * 299.99805 * 27 25 17 47 47 H 1.08996 * 109.46889 * 59.99308 * 27 25 17 48 48 H 1.08997 * 109.47355 * 179.97438 * 27 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1581 2.1088 -1.2639 5 6 3.4463 1.7069 -1.9348 6 1 4.0558 0.9237 -1.5087 7 6 3.8469 2.3391 -3.0928 8 7 4.9708 1.9880 -3.6786 9 14 2.7925 3.6933 -3.8303 10 1 3.2047 5.0039 -3.2668 11 1 2.9691 3.7107 -5.3046 12 1 1.3654 3.4418 -3.5057 13 16 2.4121 2.1202 1.4288 14 8 3.5260 2.9584 1.1532 15 8 2.4336 1.0987 2.4162 16 7 1.1567 3.1255 1.8231 17 6 -0.1792 2.5717 2.0578 18 1 -0.0999 1.5026 2.2547 19 6 -1.0502 2.7991 0.8206 20 6 -2.4451 2.2203 1.0655 21 6 -3.0809 2.9147 2.2715 22 6 -2.2100 2.6872 3.5087 23 1 -2.1303 1.6181 3.7053 24 6 -2.8455 3.3822 4.7145 25 6 -0.8147 3.2666 3.2637 26 1 -0.8941 4.3357 3.0667 27 6 0.0562 3.0392 4.5008 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5139 0.8900 33 1 1.3185 1.8687 -1.9161 34 1 2.1703 3.1807 -1.0666 35 1 5.2524 2.4326 -4.4935 36 1 1.3057 4.0809 1.8986 37 1 -1.1295 3.8683 0.6237 38 1 -0.5974 2.3041 -0.0384 39 1 -2.3654 1.1512 1.2621 40 1 -3.0657 2.3827 0.1843 41 1 -4.0746 2.5020 2.4462 42 1 -3.1606 3.9838 2.0749 43 1 -3.8394 2.9703 4.8891 44 1 -2.2247 3.2205 5.5958 45 1 -2.9247 4.4514 4.5176 46 1 0.1355 1.9700 4.6978 47 1 1.0501 3.4511 4.3262 48 1 -0.3963 3.5346 5.3598 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336884642.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:37 Heat of formation + Delta-G solvation = -125.198387 kcal Electronic energy + Delta-G solvation = -27667.819875 eV Core-core repulsion = 24075.489186 eV Total energy + Delta-G solvation = -3592.330689 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -40.48071 -38.29695 -37.77880 -36.88429 -35.61803 -34.68810 -33.91327 -31.83018 -30.91624 -28.94853 -27.81183 -26.33552 -24.62370 -23.25707 -22.58827 -21.77727 -20.97876 -20.03081 -19.11541 -18.71930 -18.21270 -17.45501 -16.75823 -16.13262 -15.79111 -15.65628 -15.41798 -15.26315 -14.97439 -14.69346 -14.55874 -14.15786 -13.84618 -13.75203 -13.64793 -13.43224 -13.20356 -13.11501 -13.06005 -12.87217 -12.77239 -12.70158 -12.59816 -12.55130 -12.35618 -12.07951 -12.07152 -11.88432 -11.69636 -11.68130 -11.63985 -11.22464 -11.15140 -10.95129 -10.77175 -10.24354 -9.77418 -8.28047 -6.33108 -0.34156 1.35980 1.39839 1.48306 1.99666 2.35516 2.61035 3.06148 3.45151 3.66031 3.80498 3.88299 3.93530 4.14807 4.24262 4.26076 4.43175 4.46073 4.53578 4.54762 4.61152 4.65908 4.72216 4.78003 4.82457 4.85919 4.92111 5.02955 5.05376 5.06379 5.08161 5.16820 5.24518 5.27500 5.33751 5.35891 5.43313 5.47400 5.48677 5.51770 5.53576 5.58096 5.72797 5.79217 6.15495 6.33896 6.70461 7.29589 8.89706 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.017780 B = 0.004814 C = 0.004458 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1574.432733 B = 5814.555381 C = 6279.779819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 N -0.990 5.990 4 C 0.242 3.758 5 C -0.540 4.540 6 H 0.028 0.972 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.271 1.271 11 H -0.280 1.280 12 H -0.226 1.226 13 S 2.791 3.209 14 O -1.018 7.018 15 O -1.007 7.007 16 N -1.111 6.111 17 C 0.151 3.849 18 H 0.084 0.916 19 C -0.147 4.147 20 C -0.116 4.116 21 C -0.111 4.111 22 C -0.084 4.084 23 H 0.070 0.930 24 C -0.145 4.145 25 C -0.083 4.083 26 H 0.084 0.916 27 C -0.153 4.153 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.085 0.915 31 H 0.071 0.929 32 H 0.077 0.923 33 H 0.054 0.946 34 H 0.031 0.969 35 H 0.267 0.733 36 H 0.421 0.579 37 H 0.072 0.928 38 H 0.069 0.931 39 H 0.068 0.932 40 H 0.073 0.927 41 H 0.074 0.926 42 H 0.065 0.935 43 H 0.062 0.938 44 H 0.057 0.943 45 H 0.057 0.943 46 H 0.048 0.952 47 H 0.042 0.958 48 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.592 2.909 13.728 26.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.017 4.017 3 N -0.831 5.831 4 C 0.117 3.883 5 C -0.580 4.580 6 H 0.046 0.954 7 C -0.191 4.191 8 N -0.590 5.590 9 Si 0.763 3.237 10 H -0.196 1.196 11 H -0.206 1.206 12 H -0.149 1.149 13 S 2.800 3.200 14 O -1.002 7.002 15 O -0.990 6.990 16 N -0.873 5.873 17 C 0.045 3.955 18 H 0.101 0.899 19 C -0.186 4.186 20 C -0.154 4.154 21 C -0.149 4.149 22 C -0.103 4.103 23 H 0.088 0.912 24 C -0.203 4.203 25 C -0.104 4.104 26 H 0.102 0.898 27 C -0.210 4.210 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.104 0.896 31 H 0.089 0.911 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.049 0.951 35 H 0.076 0.924 36 H 0.257 0.743 37 H 0.091 0.909 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.084 0.916 43 H 0.081 0.919 44 H 0.076 0.924 45 H 0.076 0.924 46 H 0.067 0.933 47 H 0.061 0.939 48 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -21.685 2.590 14.079 25.984 hybrid contribution 0.673 0.805 -0.901 1.383 sum -21.012 3.394 13.178 25.034 Atomic orbital electron populations 1.22518 0.93890 1.03743 1.02919 1.21365 0.95936 0.81326 1.03069 1.57382 1.81729 1.22657 1.21309 1.19103 0.95839 0.91096 0.82223 1.21719 1.06981 1.20292 1.08959 0.95351 1.25938 0.96349 0.99657 0.97199 1.70079 1.24258 1.44267 1.20390 0.85821 0.81209 0.78978 0.77694 1.19627 1.20562 1.14870 1.01384 0.73017 0.72847 0.72796 1.93581 1.51508 1.69600 1.85519 1.93503 1.87283 1.59240 1.59008 1.55794 1.23599 1.21520 1.86416 1.21125 0.80380 0.97964 0.96022 0.89863 1.22260 0.96258 1.02648 0.97459 1.21525 0.94563 1.00342 0.98936 1.21610 0.98679 1.01059 0.93513 1.21163 0.92964 1.00264 0.95936 0.91188 1.21853 1.00664 1.00598 0.97149 1.21420 0.94990 1.00707 0.93232 0.89799 1.21918 0.99319 1.01706 0.98093 0.91231 0.91575 0.89598 0.91055 0.90468 0.92776 0.95098 0.92448 0.74316 0.90921 0.91267 0.91371 0.90802 0.90715 0.91611 0.91904 0.92405 0.92428 0.93322 0.93931 0.90668 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.09 8.89 71.98 0.64 -3.45 16 2 C 0.11 3.62 6.31 86.38 0.55 4.17 16 3 N -0.99 -38.92 2.84 -519.86 -1.48 -40.40 16 4 C 0.24 10.90 4.24 85.63 0.36 11.26 16 5 C -0.54 -31.35 9.89 25.60 0.25 -31.09 16 6 H 0.03 1.86 8.06 -2.91 -0.02 1.84 16 7 C 0.01 0.36 5.47 84.66 0.46 0.82 16 8 N -0.95 -60.44 13.96 21.45 0.30 -60.14 16 9 Si 0.94 42.59 27.37 68.60 1.88 44.47 16 10 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 11 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 12 H -0.23 -8.76 6.69 99.48 0.67 -8.09 16 13 S 2.79 108.26 5.91 -56.49 -0.33 107.92 16 14 O -1.02 -49.77 17.49 -128.00 -2.24 -52.01 16 15 O -1.01 -40.79 16.06 -128.00 -2.06 -42.84 16 16 N -1.11 -30.21 4.71 -169.39 -0.80 -31.00 16 17 C 0.15 3.27 1.88 44.99 0.08 3.36 16 18 H 0.08 1.94 5.67 -2.38 -0.01 1.93 16 19 C -0.15 -2.81 4.59 30.59 0.14 -2.67 16 20 C -0.12 -1.65 5.82 30.59 0.18 -1.47 16 21 C -0.11 -1.33 5.20 30.60 0.16 -1.18 16 22 C -0.08 -1.13 2.25 -10.77 -0.02 -1.16 16 23 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 24 C -0.15 -1.62 8.84 71.98 0.64 -0.98 16 25 C -0.08 -1.43 1.93 -10.78 -0.02 -1.45 16 26 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 27 C -0.15 -2.94 8.68 71.98 0.62 -2.31 16 28 H 0.07 1.49 3.04 -2.39 -0.01 1.48 16 29 H 0.07 1.54 7.34 -2.39 -0.02 1.53 16 30 H 0.09 1.63 8.14 -2.39 -0.02 1.61 16 31 H 0.07 2.58 8.11 -2.39 -0.02 2.56 16 32 H 0.08 2.57 6.88 -2.39 -0.02 2.55 16 33 H 0.05 2.20 7.51 -2.39 -0.02 2.18 16 34 H 0.03 1.37 6.94 -2.39 -0.02 1.35 16 35 H 0.27 15.77 8.31 -92.71 -0.77 15.00 16 36 H 0.42 9.90 8.90 -96.75 -0.86 9.04 16 37 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 38 H 0.07 1.53 5.67 -2.39 -0.01 1.52 16 39 H 0.07 0.95 7.34 -2.39 -0.02 0.93 16 40 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 41 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 42 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 43 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 44 H 0.06 0.66 6.43 -2.39 -0.02 0.64 16 45 H 0.06 0.61 8.14 -2.38 -0.02 0.59 16 46 H 0.05 1.02 8.14 -2.38 -0.02 1.00 16 47 H 0.04 0.93 7.60 -2.39 -0.02 0.91 16 48 H 0.07 1.14 6.43 -2.39 -0.02 1.13 16 Total: -1.00 -76.38 368.89 -0.64 -77.03 By element: Atomic # 1 Polarization: 23.08 SS G_CDS: 0.04 Total: 23.12 kcal Atomic # 6 Polarization: -30.19 SS G_CDS: 4.04 Total: -26.14 kcal Atomic # 7 Polarization: -129.57 SS G_CDS: -1.97 Total: -131.54 kcal Atomic # 8 Polarization: -90.56 SS G_CDS: -4.29 Total: -94.85 kcal Atomic # 14 Polarization: 42.59 SS G_CDS: 1.88 Total: 44.47 kcal Atomic # 16 Polarization: 108.26 SS G_CDS: -0.33 Total: 107.92 kcal Total: -76.38 -0.64 -77.03 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336884642.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.173 kcal (2) G-P(sol) polarization free energy of solvation -76.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.558 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.198 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds