Wall clock time and date at job start Tue Mar 31 2020 12:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46503 * 109.47164 * 2 1 4 4 C 1.46495 * 120.00147 * 84.99567 * 3 2 1 5 5 C 1.50702 * 109.47571 * 275.00363 * 4 3 2 6 6 H 1.08002 * 119.99446 * 359.97438 * 5 4 3 7 7 C 1.37871 * 120.00072 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99826 * 179.72119 * 7 5 4 9 9 Si 1.86800 * 120.00406 * 359.97438 * 7 5 4 10 10 H 1.48501 * 109.46758 * 269.72576 * 9 7 5 11 11 H 1.48499 * 109.47026 * 29.72423 * 9 7 5 12 12 H 1.48496 * 109.47474 * 149.72459 * 9 7 5 13 13 S 1.65601 * 119.99720 * 264.99774 * 3 2 1 14 14 O 1.42105 * 106.39977 * 23.53839 * 13 3 2 15 15 O 1.42100 * 106.39948 * 156.45748 * 13 3 2 16 16 N 1.65597 * 107.21916 * 270.00204 * 13 3 2 17 17 C 1.46502 * 120.00273 * 64.99613 * 16 13 3 18 18 H 1.08996 * 109.46744 * 25.00104 * 17 16 13 19 19 C 1.53001 * 109.46941 * 265.00257 * 17 16 13 20 20 C 1.53002 * 109.46574 * 180.02562 * 19 17 16 21 21 C 1.53002 * 109.47358 * 59.99802 * 20 19 17 22 22 H 1.09006 * 109.46703 * 60.00164 * 21 20 19 23 23 C 1.53001 * 109.46843 * 179.97438 * 21 20 19 24 24 C 1.52993 * 109.47309 * 300.00089 * 21 20 19 25 25 H 1.09005 * 109.47234 * 300.00260 * 24 21 20 26 26 C 1.52994 * 109.47357 * 179.97438 * 24 21 20 27 27 C 1.52994 * 109.46897 * 145.00057 * 17 16 13 28 28 H 1.09000 * 109.47134 * 300.00191 * 1 2 3 29 29 H 1.08996 * 109.47168 * 60.00141 * 1 2 3 30 30 H 1.09004 * 109.47077 * 180.02562 * 1 2 3 31 31 H 1.08997 * 109.47510 * 239.99160 * 2 1 3 32 32 H 1.09011 * 109.46895 * 119.99463 * 2 1 3 33 33 H 1.09000 * 109.47378 * 155.00022 * 4 3 2 34 34 H 1.09001 * 109.47153 * 35.00143 * 4 3 2 35 35 H 0.96999 * 120.00128 * 180.27192 * 8 7 5 36 36 H 0.97004 * 119.99596 * 245.00091 * 16 13 3 37 37 H 1.08996 * 109.47277 * 299.99520 * 19 17 16 38 38 H 1.09000 * 109.47324 * 60.00196 * 19 17 16 39 39 H 1.09002 * 109.47138 * 180.02562 * 20 19 17 40 40 H 1.09011 * 109.47339 * 299.99786 * 20 19 17 41 41 H 1.08997 * 109.47429 * 60.00437 * 23 21 20 42 42 H 1.09000 * 109.46696 * 180.02562 * 23 21 20 43 43 H 1.09002 * 109.47163 * 299.99596 * 23 21 20 44 44 H 1.09004 * 109.47006 * 59.99832 * 26 24 21 45 45 H 1.08997 * 109.47641 * 179.97438 * 26 24 21 46 46 H 1.08996 * 109.47386 * 300.00155 * 26 24 21 47 47 H 1.09002 * 109.47374 * 300.00484 * 27 17 16 48 48 H 1.09005 * 109.47338 * 60.00699 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2638 5 6 0.8360 2.7289 1.6356 6 1 -0.0226 2.5948 0.9942 7 6 0.7226 3.4682 2.7938 8 7 -0.4300 4.0139 3.1153 9 14 2.2078 3.7006 3.9027 10 1 2.2519 2.6072 4.9065 11 1 3.4463 3.6713 3.0839 12 1 2.1057 5.0081 4.5992 13 16 2.4123 2.1201 -1.4287 14 8 1.6869 1.4413 -2.4448 15 8 2.3057 3.5185 -1.1999 16 7 4.0144 1.8136 -1.7138 17 6 4.4658 0.4411 -1.9568 18 1 3.6373 -0.1499 -2.3471 19 6 4.9575 -0.1738 -0.6449 20 6 5.4294 -1.6069 -0.8989 21 6 6.5720 -1.5948 -1.9165 22 1 7.4002 -1.0034 -1.5258 23 6 7.0442 -3.0279 -2.1699 24 6 6.0803 -0.9798 -3.2282 25 1 5.2520 -1.5712 -3.6188 26 6 7.2229 -0.9672 -4.2455 27 6 5.6081 0.4527 -2.9745 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 1.8934 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 2.9080 2.8919 1.1513 34 1 2.4689 1.4184 2.0480 35 1 -0.5088 4.5374 3.9282 36 1 4.6541 2.5428 -1.7198 37 1 5.7860 0.4173 -0.2546 38 1 4.1437 -0.1820 0.0801 39 1 5.7794 -2.0452 0.0357 40 1 4.6013 -2.1984 -1.2895 41 1 6.2163 -3.6197 -2.5603 42 1 7.8585 -3.0193 -2.8945 43 1 7.3948 -3.4656 -1.2352 44 1 7.5595 -1.9881 -4.4265 45 1 6.8725 -0.5295 -5.1802 46 1 8.0508 -0.3757 -3.8548 47 1 5.2577 0.8909 -3.9090 48 1 6.4366 1.0438 -2.5841 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336897281.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:56 Heat of formation + Delta-G solvation = -106.646804 kcal Electronic energy + Delta-G solvation = -27063.212753 eV Core-core repulsion = 23471.686521 eV Total energy + Delta-G solvation = -3591.526232 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.54881 -36.66043 -36.17977 -35.18971 -35.17535 -32.51215 -32.35844 -30.63244 -30.05376 -27.29634 -27.11351 -25.27733 -22.55168 -22.11476 -21.73292 -21.05674 -20.12557 -18.84368 -17.12454 -17.09144 -16.61458 -16.11151 -15.25691 -14.92261 -14.68289 -14.56995 -14.27086 -14.16771 -13.70485 -13.31383 -13.12116 -12.99176 -12.76134 -12.54143 -12.29691 -12.13952 -12.08562 -11.93886 -11.91857 -11.55070 -11.48649 -11.47021 -11.32551 -11.11231 -11.09259 -11.03842 -10.97923 -10.67896 -10.50007 -10.37041 -10.22850 -10.17456 -10.13723 -9.43442 -9.27974 -8.57102 -8.12896 -6.05790 -4.04202 1.18405 3.26360 3.33941 3.34911 3.46122 4.09876 4.39957 4.41863 4.47355 4.60253 4.79220 4.91011 4.95618 5.11138 5.21149 5.24027 5.25445 5.32195 5.35260 5.38119 5.38757 5.55313 5.59342 5.63867 5.68233 5.77311 5.82348 5.84191 5.86963 5.92692 6.00727 6.07861 6.12756 6.16060 6.21467 6.24715 6.35422 6.43194 6.65964 6.71969 7.02409 7.09257 7.20635 7.48315 7.61143 8.51895 9.00240 9.53621 11.07573 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.018002 B = 0.004194 C = 0.003988 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1555.009130 B = 6674.207803 C = 7019.151823 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.135 3.865 3 N -0.986 5.986 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.072 3.928 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.284 1.284 13 S 2.780 3.220 14 O -0.992 6.992 15 O -0.965 6.965 16 N -1.132 6.132 17 C 0.153 3.847 18 H 0.088 0.912 19 C -0.144 4.144 20 C -0.112 4.112 21 C -0.089 4.089 22 H 0.070 0.930 23 C -0.149 4.149 24 C -0.086 4.086 25 H 0.073 0.927 26 C -0.148 4.148 27 C -0.117 4.117 28 H 0.083 0.917 29 H 0.054 0.946 30 H 0.050 0.950 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.032 0.968 34 H 0.028 0.972 35 H 0.264 0.736 36 H 0.411 0.589 37 H 0.068 0.932 38 H 0.076 0.924 39 H 0.065 0.935 40 H 0.065 0.935 41 H 0.054 0.946 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.057 0.943 45 H 0.054 0.946 46 H 0.053 0.947 47 H 0.069 0.931 48 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.229 -13.620 -10.388 23.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 N -0.828 5.828 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.534 5.534 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.210 1.210 13 S 2.788 3.212 14 O -0.975 6.975 15 O -0.948 6.948 16 N -0.889 5.889 17 C 0.045 3.955 18 H 0.106 0.894 19 C -0.183 4.183 20 C -0.151 4.151 21 C -0.107 4.107 22 H 0.088 0.912 23 C -0.206 4.206 24 C -0.105 4.105 25 H 0.092 0.908 26 C -0.205 4.205 27 C -0.156 4.156 28 H 0.101 0.899 29 H 0.073 0.927 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.089 0.911 33 H 0.050 0.950 34 H 0.046 0.954 35 H 0.074 0.926 36 H 0.244 0.756 37 H 0.087 0.913 38 H 0.095 0.905 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.073 0.927 42 H 0.075 0.925 43 H 0.071 0.929 44 H 0.076 0.924 45 H 0.073 0.927 46 H 0.072 0.928 47 H 0.088 0.912 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 15.407 -13.133 -10.804 22.947 hybrid contribution 1.175 0.401 1.045 1.622 sum 16.581 -12.732 -9.759 23.071 Atomic orbital electron populations 1.22263 0.95942 1.00860 1.04165 1.21012 0.95249 0.81954 1.00933 1.57540 1.78655 1.23013 1.23572 1.19418 0.98233 0.91067 0.80721 1.21435 0.95828 1.31677 1.07747 0.90034 1.24872 0.95624 0.95009 0.97515 1.69894 1.24112 1.34229 1.25199 0.86924 0.83961 0.77993 0.81228 1.20167 1.19003 1.21003 1.02018 0.72819 0.73293 0.73100 1.93545 1.70410 1.76452 1.57128 1.93645 1.85212 1.30419 1.85549 1.56371 1.29597 1.14208 1.88689 1.20743 0.97731 0.81961 0.95045 0.89441 1.22176 1.02218 0.96078 0.97802 1.21573 0.98032 0.96495 0.98966 1.21203 0.97995 0.96406 0.95104 0.91186 1.21891 1.01134 0.96182 1.01428 1.21136 0.98240 0.95830 0.95303 0.90842 1.21876 0.98204 1.01773 0.98686 1.21856 0.97712 0.96923 0.99106 0.89853 0.92720 0.93141 0.92099 0.91146 0.94996 0.95432 0.92607 0.75648 0.91315 0.90497 0.91602 0.91673 0.92674 0.92529 0.92853 0.92354 0.92737 0.92773 0.91193 0.91380 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.11 9.83 37.16 0.37 -2.74 16 2 C 0.13 2.23 4.95 -4.04 -0.02 2.21 16 3 N -0.99 -19.29 2.53 -115.66 -0.29 -19.58 16 4 C 0.23 5.24 4.19 -5.20 -0.02 5.21 16 5 C -0.53 -14.70 8.97 -34.44 -0.31 -15.01 16 6 H 0.08 2.48 7.13 -52.49 -0.37 2.11 16 7 C 0.07 2.07 5.47 -17.82 -0.10 1.97 16 8 N -0.90 -27.37 13.96 55.43 0.77 -26.60 16 9 Si 0.87 20.98 27.47 -169.99 -4.67 16.31 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.06 6.54 56.52 0.37 -5.69 16 12 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 13 S 2.78 53.77 6.03 -107.50 -0.65 53.12 16 14 O -0.99 -20.43 16.45 -57.17 -0.94 -21.37 16 15 O -0.96 -22.85 17.11 -57.17 -0.98 -23.83 16 16 N -1.13 -15.86 5.53 -4.89 -0.03 -15.89 16 17 C 0.15 1.78 2.81 -67.93 -0.19 1.59 16 18 H 0.09 1.08 7.13 -51.93 -0.37 0.71 16 19 C -0.14 -1.53 5.53 -26.73 -0.15 -1.68 16 20 C -0.11 -0.98 5.20 -26.73 -0.14 -1.12 16 21 C -0.09 -0.69 2.25 -90.62 -0.20 -0.89 16 22 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 23 C -0.15 -1.00 8.84 37.16 0.33 -0.67 16 24 C -0.09 -0.69 2.25 -90.65 -0.20 -0.90 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 26 C -0.15 -1.03 8.84 37.15 0.33 -0.70 16 27 C -0.12 -1.11 4.73 -26.76 -0.13 -1.23 16 28 H 0.08 1.73 6.59 -51.93 -0.34 1.39 16 29 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 30 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.06 0.87 7.24 -51.93 -0.38 0.49 16 32 H 0.07 1.04 8.00 -51.92 -0.42 0.62 16 33 H 0.03 0.75 6.66 -51.93 -0.35 0.40 16 34 H 0.03 0.59 7.43 -51.93 -0.39 0.20 16 35 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 36 H 0.41 5.02 8.84 -34.46 -0.30 4.71 16 37 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.08 0.91 6.60 -51.93 -0.34 0.57 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.06 0.56 8.14 -51.92 -0.42 0.13 16 41 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 42 H 0.06 0.35 6.43 -51.93 -0.33 0.01 16 43 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 44 H 0.06 0.36 6.43 -51.93 -0.33 0.03 16 45 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 46 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 47 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 376.32 15.07 5.67 5.67 Total: -1.00 -33.67 376.32 -10.14 -43.81 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -8.59 Total: 2.31 kcal Atomic # 6 Polarization: -13.52 SS G_CDS: -0.44 Total: -13.96 kcal Atomic # 7 Polarization: -62.52 SS G_CDS: 0.45 Total: -62.07 kcal Atomic # 8 Polarization: -43.28 SS G_CDS: -1.92 Total: -45.20 kcal Atomic # 14 Polarization: 20.98 SS G_CDS: -4.67 Total: 16.31 kcal Atomic # 16 Polarization: 53.77 SS G_CDS: -0.65 Total: 53.12 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -33.67 -10.14 -43.81 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336897281.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.835 kcal (2) G-P(sol) polarization free energy of solvation -33.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.137 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.812 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds