Wall clock time and date at job start Tue Mar 31 2020 12:21:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47473 * 2 1 4 4 C 1.46496 * 120.00054 * 275.00409 * 3 2 1 5 5 C 1.50700 * 109.47333 * 84.99696 * 4 3 2 6 6 H 1.07993 * 119.99520 * 359.97438 * 5 4 3 7 7 C 1.37877 * 119.99897 * 180.02562 * 5 4 3 8 8 N 1.31514 * 120.00114 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 119.99940 * 179.97438 * 7 5 4 10 10 H 1.48511 * 109.46925 * 60.00031 * 9 7 5 11 11 H 1.48495 * 109.47229 * 179.97438 * 9 7 5 12 12 H 1.48490 * 109.47153 * 300.00026 * 9 7 5 13 13 S 1.65609 * 119.99795 * 94.99975 * 3 2 1 14 14 O 1.42095 * 106.39804 * 203.54348 * 13 3 2 15 15 O 1.42097 * 106.39906 * 336.46033 * 13 3 2 16 16 N 1.65597 * 107.21866 * 90.00244 * 13 3 2 17 17 C 1.46502 * 119.99706 * 64.99470 * 16 13 3 18 18 H 1.09004 * 109.47175 * 25.00765 * 17 16 13 19 19 C 1.52997 * 109.47547 * 265.00146 * 17 16 13 20 20 C 1.53004 * 109.47158 * 180.02562 * 19 17 16 21 21 C 1.52992 * 109.47340 * 60.00009 * 20 19 17 22 22 H 1.08999 * 109.47237 * 180.02562 * 21 20 19 23 23 C 1.52999 * 109.47583 * 60.00055 * 21 20 19 24 24 C 1.53008 * 109.47185 * 299.99854 * 21 20 19 25 25 H 1.08997 * 109.46956 * 300.00481 * 24 21 20 26 26 C 1.52992 * 109.47185 * 180.02562 * 24 21 20 27 27 C 1.53006 * 109.46447 * 145.00055 * 17 16 13 28 28 H 1.09002 * 109.47153 * 59.99757 * 1 2 3 29 29 H 1.09001 * 109.46832 * 299.99948 * 1 2 3 30 30 H 1.09004 * 109.47261 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47153 * 120.00243 * 2 1 3 32 32 H 1.08998 * 109.47533 * 239.99872 * 2 1 3 33 33 H 1.09000 * 109.46877 * 205.00155 * 4 3 2 34 34 H 1.09004 * 109.46968 * 324.99314 * 4 3 2 35 35 H 0.97000 * 119.99998 * 179.97438 * 8 7 5 36 36 H 0.96994 * 120.00175 * 245.00036 * 16 13 3 37 37 H 1.09006 * 109.46603 * 300.00019 * 19 17 16 38 38 H 1.08993 * 109.47264 * 59.99909 * 19 17 16 39 39 H 1.08997 * 109.46952 * 179.97438 * 20 19 17 40 40 H 1.08997 * 109.46822 * 299.99516 * 20 19 17 41 41 H 1.08997 * 109.47034 * 59.99816 * 23 21 20 42 42 H 1.08999 * 109.47450 * 180.02562 * 23 21 20 43 43 H 1.09003 * 109.46606 * 299.99957 * 23 21 20 44 44 H 1.08999 * 109.47237 * 60.00334 * 26 24 21 45 45 H 1.09008 * 109.47244 * 180.02562 * 26 24 21 46 46 H 1.08997 * 109.47566 * 300.00107 * 26 24 21 47 47 H 1.08997 * 109.47419 * 300.00036 * 27 17 16 48 48 H 1.09002 * 109.47336 * 60.00713 * 27 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1087 -1.2638 5 6 0.8360 2.7289 -1.6355 6 1 -0.0226 2.5942 -0.9946 7 6 0.7224 3.4673 -2.7943 8 7 1.7681 3.6308 -3.5750 9 14 -0.9167 4.2355 -3.2554 10 1 -1.3403 5.1764 -2.1874 11 1 -0.7749 4.9730 -4.5365 12 1 -1.9378 3.1683 -3.4085 13 16 2.4123 2.1201 1.4288 14 8 2.3058 3.5185 1.1999 15 8 1.6869 1.4414 2.4448 16 7 4.0145 1.8136 1.7138 17 6 5.0351 2.3523 0.8114 18 1 4.6478 3.2418 0.3144 19 6 5.3962 1.2985 -0.2374 20 6 6.4626 1.8609 -1.1795 21 6 7.7110 2.2285 -0.3751 22 1 8.4705 2.6296 -1.0462 23 6 8.2543 0.9799 0.3225 24 6 7.3500 3.2824 0.6737 25 1 6.9630 4.1719 0.1767 26 6 8.5986 3.6505 1.4776 27 6 6.2837 2.7203 1.6155 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5139 0.8900 32 1 1.8934 -0.5138 -0.8899 33 1 2.9081 2.8917 -1.1512 34 1 2.4690 1.4182 -2.0480 35 1 1.6880 4.1500 -4.3905 36 1 4.2772 1.2773 2.4782 37 1 5.7835 0.4090 0.2597 38 1 4.5067 1.0362 -0.8102 39 1 6.7201 1.1100 -1.9263 40 1 6.0755 2.7504 -1.6765 41 1 8.5114 0.2291 -0.4246 42 1 9.1434 1.2419 0.8959 43 1 7.4945 0.5792 0.9937 44 1 9.3579 4.0513 0.8062 45 1 8.3413 4.4010 2.2252 46 1 8.9860 2.7611 1.9746 47 1 6.0265 3.4710 2.3627 48 1 6.6711 1.8308 2.1125 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336897284.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:21:02 Heat of formation + Delta-G solvation = -107.520460 kcal Electronic energy + Delta-G solvation = -27384.994675 eV Core-core repulsion = 23793.430559 eV Total energy + Delta-G solvation = -3591.564117 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.59402 -36.56874 -36.04116 -35.09451 -34.84910 -32.56542 -32.17882 -29.83337 -29.73561 -27.30832 -26.70141 -25.52703 -22.77883 -22.14225 -21.82520 -21.21865 -19.19473 -18.19120 -17.06216 -16.80216 -16.25511 -15.97515 -15.52358 -15.03138 -14.89699 -14.33879 -14.00315 -13.78907 -13.55763 -13.06003 -12.96209 -12.90495 -12.65792 -12.23263 -12.21012 -12.03047 -11.81262 -11.79191 -11.63595 -11.55698 -11.44523 -11.27691 -11.17552 -10.96990 -10.95421 -10.92697 -10.66091 -10.42624 -10.39443 -10.20263 -10.14438 -10.03032 -9.86507 -9.58273 -9.10636 -8.40499 -8.05499 -6.03717 -4.06166 1.29768 3.34990 3.38607 3.43411 3.58260 4.19311 4.47038 4.67451 4.70003 4.78351 5.09363 5.10179 5.19676 5.29400 5.32443 5.38149 5.45500 5.49011 5.53653 5.60343 5.63361 5.73475 5.81070 5.84039 5.88762 5.92032 5.95350 6.00055 6.02581 6.11644 6.18689 6.30347 6.31153 6.34896 6.43252 6.47269 6.54363 6.64879 6.73480 7.01416 7.18570 7.31811 7.45933 7.68431 7.94432 8.24947 8.95461 9.58302 11.04786 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.013926 B = 0.004985 C = 0.004295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.168873 B = 5615.397142 C = 6517.210009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.137 3.863 3 N -0.993 5.993 4 C 0.260 3.740 5 C -0.524 4.524 6 H 0.062 0.938 7 C 0.063 3.937 8 N -0.896 5.896 9 Si 0.893 3.107 10 H -0.275 1.275 11 H -0.287 1.287 12 H -0.277 1.277 13 S 2.779 3.221 14 O -0.966 6.966 15 O -1.000 7.000 16 N -1.132 6.132 17 C 0.152 3.848 18 H 0.094 0.906 19 C -0.140 4.140 20 C -0.114 4.114 21 C -0.087 4.087 22 H 0.068 0.932 23 C -0.152 4.152 24 C -0.088 4.088 25 H 0.075 0.925 26 C -0.147 4.147 27 C -0.116 4.116 28 H 0.078 0.922 29 H 0.052 0.948 30 H 0.049 0.951 31 H 0.059 0.941 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.034 0.966 35 H 0.263 0.737 36 H 0.406 0.594 37 H 0.065 0.935 38 H 0.078 0.922 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.050 0.950 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.053 0.947 45 H 0.052 0.948 46 H 0.056 0.944 47 H 0.066 0.934 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.120 -6.361 7.459 16.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.011 3.989 3 N -0.835 5.835 4 C 0.138 3.862 5 C -0.564 4.564 6 H 0.080 0.920 7 C -0.139 4.139 8 N -0.535 5.535 9 Si 0.721 3.279 10 H -0.201 1.201 11 H -0.213 1.213 12 H -0.202 1.202 13 S 2.787 3.213 14 O -0.949 6.949 15 O -0.984 6.984 16 N -0.888 5.888 17 C 0.045 3.955 18 H 0.112 0.888 19 C -0.179 4.179 20 C -0.152 4.152 21 C -0.105 4.105 22 H 0.086 0.914 23 C -0.209 4.209 24 C -0.107 4.107 25 H 0.093 0.907 26 C -0.204 4.204 27 C -0.155 4.155 28 H 0.097 0.903 29 H 0.071 0.929 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.088 0.912 33 H 0.054 0.946 34 H 0.052 0.948 35 H 0.072 0.928 36 H 0.238 0.762 37 H 0.084 0.916 38 H 0.097 0.903 39 H 0.083 0.917 40 H 0.089 0.911 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.072 0.928 45 H 0.071 0.929 46 H 0.075 0.925 47 H 0.085 0.915 48 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.531 -5.633 7.679 15.739 hybrid contribution -0.563 0.004 -0.315 0.645 sum 11.968 -5.629 7.364 15.138 Atomic orbital electron populations 1.22260 0.96480 1.00755 1.03635 1.20917 0.94733 0.82299 1.00966 1.57753 1.78505 1.22922 1.24310 1.19033 0.97415 0.90812 0.78977 1.21492 0.96391 1.31811 1.06695 0.92031 1.24903 0.96727 0.96026 0.96270 1.69899 1.29227 1.40739 1.13641 0.86639 0.84050 0.79567 0.77679 1.20089 1.21271 1.20244 1.02006 0.72595 0.73932 0.72767 1.93621 1.85341 1.30582 1.85357 1.93537 1.70313 1.76325 1.58245 1.56316 1.25732 1.68535 1.38219 1.20785 0.88364 0.96599 0.89741 0.88837 1.22135 0.99939 0.98467 0.97325 1.21527 0.94526 1.01647 0.97478 1.21142 0.97422 0.95456 0.96522 0.91369 1.21989 1.00740 0.97545 1.00583 1.21124 0.95126 0.98495 0.95934 0.90666 1.21868 0.97429 1.01191 0.99925 1.21871 0.94339 1.01267 0.98055 0.90296 0.92888 0.93191 0.92251 0.91192 0.94561 0.94845 0.92762 0.76223 0.91646 0.90315 0.91745 0.91086 0.93075 0.92865 0.92037 0.92782 0.92850 0.92527 0.91497 0.91354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.06 9.83 37.16 0.37 -2.69 16 2 C 0.14 2.36 6.09 -4.04 -0.02 2.34 16 3 N -0.99 -19.92 2.53 -115.67 -0.29 -20.22 16 4 C 0.26 6.20 3.98 -5.20 -0.02 6.18 16 5 C -0.52 -14.28 8.41 -34.44 -0.29 -14.57 16 6 H 0.06 1.69 6.89 -52.49 -0.36 1.33 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.65 16 8 N -0.90 -25.50 13.29 55.43 0.74 -24.76 16 9 Si 0.89 21.68 29.54 -169.99 -5.02 16.66 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 13 S 2.78 54.92 6.03 -107.50 -0.65 54.27 16 14 O -0.97 -23.21 16.45 -57.17 -0.94 -24.15 16 15 O -1.00 -20.90 17.11 -57.17 -0.98 -21.88 16 16 N -1.13 -16.69 5.53 -4.89 -0.03 -16.71 16 17 C 0.15 2.16 2.81 -67.93 -0.19 1.97 16 18 H 0.09 1.59 7.13 -51.93 -0.37 1.22 16 19 C -0.14 -1.85 5.25 -26.73 -0.14 -1.99 16 20 C -0.11 -1.39 5.45 -26.73 -0.15 -1.54 16 21 C -0.09 -0.89 2.72 -90.62 -0.25 -1.14 16 22 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 23 C -0.15 -1.37 8.15 37.16 0.30 -1.06 16 24 C -0.09 -0.93 2.49 -90.64 -0.23 -1.15 16 25 H 0.07 0.88 8.14 -51.93 -0.42 0.45 16 26 C -0.15 -1.29 8.84 37.15 0.33 -0.96 16 27 C -0.12 -1.33 4.46 -26.74 -0.12 -1.45 16 28 H 0.08 1.57 6.59 -51.93 -0.34 1.22 16 29 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.07 1.11 8.00 -51.93 -0.42 0.69 16 33 H 0.04 0.92 7.24 -51.93 -0.38 0.55 16 34 H 0.03 0.81 8.00 -51.93 -0.42 0.40 16 35 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 36 H 0.41 4.86 8.84 -34.47 -0.30 4.55 16 37 H 0.06 0.76 6.43 -51.93 -0.33 0.42 16 38 H 0.08 1.20 6.60 -51.93 -0.34 0.86 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 40 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 42 H 0.05 0.43 6.43 -51.93 -0.33 0.10 16 43 H 0.06 0.57 4.81 -51.93 -0.25 0.32 16 44 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 46 H 0.06 0.46 6.43 -51.93 -0.33 0.12 16 47 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 48 H 0.07 0.68 6.43 -51.93 -0.33 0.35 16 LS Contribution 372.88 15.07 5.62 5.62 Total: -1.00 -31.89 372.88 -10.33 -42.21 By element: Atomic # 1 Polarization: 11.62 SS G_CDS: -8.27 Total: 3.35 kcal Atomic # 6 Polarization: -13.90 SS G_CDS: -0.50 Total: -14.41 kcal Atomic # 7 Polarization: -62.11 SS G_CDS: 0.42 Total: -61.69 kcal Atomic # 8 Polarization: -44.10 SS G_CDS: -1.92 Total: -46.02 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -5.02 Total: 16.66 kcal Atomic # 16 Polarization: 54.92 SS G_CDS: -0.65 Total: 54.27 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -31.89 -10.33 -42.21 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336897284.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.306 kcal (2) G-P(sol) polarization free energy of solvation -31.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.194 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.326 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.520 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds