Wall clock time and date at job start Tue Mar 31 2020 12:20:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.46881 * 2 1 4 4 C 1.46496 * 120.00186 * 274.99809 * 3 2 1 5 5 C 1.50701 * 109.47382 * 280.12203 * 4 3 2 6 6 H 1.07994 * 119.99670 * 4.16164 * 5 4 3 7 7 C 1.37878 * 119.99780 * 184.16223 * 5 4 3 8 8 N 1.31509 * 119.99988 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99602 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47039 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46821 * 119.99720 * 9 7 5 12 12 H 1.48490 * 109.47097 * 239.99873 * 9 7 5 13 13 S 1.65600 * 119.99728 * 94.99945 * 3 2 1 14 14 O 1.42094 * 106.40434 * 330.06326 * 13 3 2 15 15 O 1.42097 * 106.40120 * 197.13678 * 13 3 2 16 16 N 1.65611 * 107.21609 * 83.60216 * 13 3 2 17 17 C 1.46497 * 120.00096 * 65.30054 * 16 13 3 18 18 C 1.52995 * 109.46931 * 165.69807 * 17 16 13 19 19 H 1.08997 * 109.47221 * 304.99406 * 18 17 16 20 20 C 1.52997 * 109.47451 * 65.00074 * 18 17 16 21 21 C 1.53004 * 109.47339 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46614 * 299.99872 * 21 20 18 23 23 C 1.53001 * 109.47491 * 59.99991 * 22 21 20 24 24 H 1.09000 * 109.46942 * 59.99742 * 23 22 21 25 25 C 1.52995 * 109.47063 * 179.97438 * 23 22 21 26 26 C 1.52997 * 109.47096 * 300.00136 * 23 22 21 27 27 H 1.08999 * 109.47075 * 299.99655 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00153 * 1 2 3 29 29 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47501 * 240.00221 * 2 1 3 31 31 H 1.08999 * 109.47197 * 119.99847 * 2 1 3 32 32 H 1.08999 * 109.46866 * 40.12263 * 4 3 2 33 33 H 1.08994 * 109.47177 * 160.11622 * 4 3 2 34 34 H 0.97003 * 119.99535 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99637 * 245.29493 * 16 13 3 36 36 H 1.09003 * 109.47118 * 45.69249 * 17 16 13 37 37 H 1.08997 * 109.47066 * 285.69610 * 17 16 13 38 38 H 1.09001 * 109.46652 * 299.99666 * 20 18 17 39 39 H 1.08997 * 109.47453 * 59.99474 * 20 18 17 40 40 H 1.08997 * 109.47415 * 59.99282 * 21 20 18 41 41 H 1.08991 * 109.47098 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.47238 * 299.99914 * 22 21 20 43 43 H 1.09001 * 109.46644 * 180.02562 * 22 21 20 44 44 H 1.09005 * 109.46982 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46868 * 299.99886 * 25 23 22 46 46 H 1.09000 * 109.47442 * 60.00060 * 25 23 22 47 47 H 1.08996 * 109.47274 * 180.02562 * 26 23 22 48 48 H 1.09005 * 109.46532 * 299.99877 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4375 1.6936 -1.9435 6 1 4.0482 0.9131 -1.5144 7 6 3.8283 2.3104 -3.1131 8 7 3.0844 3.2606 -3.6358 9 14 5.4146 1.7962 -3.9552 10 1 6.0626 0.7139 -3.1716 11 1 5.1116 1.3032 -5.3228 12 1 6.3300 2.9622 -4.0408 13 16 2.4120 2.1203 1.4287 14 8 1.5761 1.5435 2.4225 15 8 2.4527 3.5152 1.1611 16 7 3.9615 1.6705 1.8024 17 6 5.0727 2.0886 0.9442 18 6 6.3964 1.8615 1.6771 19 1 6.3724 2.3751 2.6381 20 6 6.6026 0.3627 1.9049 21 6 7.9261 0.1356 2.6383 22 6 9.0776 0.6865 1.7948 23 6 8.8714 2.1853 1.5670 24 1 8.8469 2.6989 2.5281 25 6 10.0232 2.7362 0.7240 26 6 7.5480 2.4124 0.8336 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3118 1.8789 -1.9110 33 1 2.1832 3.1802 -1.0655 34 1 3.3592 3.6942 -4.4588 35 1 4.1332 1.1303 2.5896 36 1 4.9676 3.1465 0.7032 37 1 5.0616 1.5037 0.0246 38 1 5.7825 -0.0296 2.5062 39 1 6.6266 -0.1510 0.9438 40 1 7.9017 0.6492 3.5994 41 1 8.0732 -0.9322 2.8001 42 1 9.1020 0.1729 0.8337 43 1 10.0205 0.5243 2.3171 44 1 9.8766 3.8041 0.5621 45 1 10.9658 2.5745 1.2469 46 1 10.0481 2.2227 -0.2371 47 1 7.4013 3.4801 0.6709 48 1 7.5725 1.8987 -0.1275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336899928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:20:00 Heat of formation + Delta-G solvation = -118.745388 kcal Electronic energy + Delta-G solvation = -26952.803468 eV Core-core repulsion = 23360.752602 eV Total energy + Delta-G solvation = -3592.050866 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.07043 -36.59928 -36.01168 -35.15788 -35.09939 -32.70795 -32.20052 -30.77299 -29.90202 -26.62574 -26.37534 -25.02251 -23.14652 -22.08834 -21.64820 -20.47013 -19.74624 -18.69874 -17.08709 -16.76923 -16.43422 -15.71315 -15.28009 -15.08912 -14.52940 -14.38333 -14.29600 -13.86936 -13.66593 -13.38470 -13.22013 -12.89231 -12.65770 -12.37333 -12.07454 -12.04675 -11.93403 -11.80875 -11.66837 -11.42432 -11.29767 -11.25962 -11.16670 -11.07279 -11.01316 -10.93186 -10.83026 -10.52479 -10.40603 -10.33432 -10.05143 -10.01907 -9.88677 -9.75457 -8.89185 -8.50605 -8.02884 -6.11587 -4.17768 1.36391 3.22202 3.30862 3.32014 3.60455 4.22652 4.34566 4.63467 4.68504 4.75070 5.08681 5.13932 5.17595 5.22522 5.34031 5.42332 5.43982 5.48142 5.51353 5.65039 5.68708 5.74483 5.79168 5.82493 5.85821 5.94307 5.99174 6.06668 6.10851 6.14798 6.25508 6.25849 6.26951 6.32404 6.35900 6.43512 6.52850 6.68541 6.70337 6.75592 7.33220 7.41573 7.49202 7.71931 7.86272 8.16438 8.86800 9.47673 10.96476 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.005944 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.220164 B = 4709.198276 C = 6481.331239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.133 3.867 3 N -0.992 5.992 4 C 0.243 3.757 5 C -0.536 4.536 6 H 0.065 0.935 7 C 0.065 3.935 8 N -0.887 5.887 9 Si 0.888 3.112 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.282 1.282 13 S 2.785 3.215 14 O -1.003 7.003 15 O -0.980 6.980 16 N -1.130 6.130 17 C 0.121 3.879 18 C -0.091 4.091 19 H 0.072 0.928 20 C -0.115 4.115 21 C -0.118 4.118 22 C -0.114 4.114 23 C -0.090 4.090 24 H 0.067 0.933 25 C -0.148 4.148 26 C -0.111 4.111 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.056 0.944 30 H 0.079 0.921 31 H 0.059 0.941 32 H 0.033 0.967 33 H 0.056 0.944 34 H 0.264 0.736 35 H 0.404 0.596 36 H 0.077 0.923 37 H 0.086 0.914 38 H 0.061 0.939 39 H 0.066 0.934 40 H 0.059 0.941 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.056 0.944 44 H 0.055 0.945 45 H 0.050 0.950 46 H 0.054 0.946 47 H 0.067 0.933 48 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.857 -6.095 9.933 14.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.006 3.994 3 N -0.833 5.833 4 C 0.120 3.880 5 C -0.576 4.576 6 H 0.083 0.917 7 C -0.138 4.138 8 N -0.526 5.526 9 Si 0.716 3.284 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.208 1.208 13 S 2.793 3.207 14 O -0.987 6.987 15 O -0.963 6.963 16 N -0.889 5.889 17 C -0.005 4.005 18 C -0.111 4.111 19 H 0.090 0.910 20 C -0.153 4.153 21 C -0.156 4.156 22 C -0.152 4.152 23 C -0.109 4.109 24 H 0.086 0.914 25 C -0.205 4.205 26 C -0.150 4.150 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.075 0.925 30 H 0.098 0.902 31 H 0.077 0.923 32 H 0.051 0.949 33 H 0.074 0.926 34 H 0.073 0.927 35 H 0.237 0.763 36 H 0.096 0.904 37 H 0.104 0.896 38 H 0.079 0.921 39 H 0.085 0.915 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.075 0.925 44 H 0.074 0.926 45 H 0.069 0.931 46 H 0.074 0.926 47 H 0.086 0.914 48 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 8.241 -5.246 10.097 14.049 hybrid contribution 1.208 -0.744 -0.578 1.532 sum 9.449 -5.990 9.519 14.689 Atomic orbital electron populations 1.22213 0.97011 1.01279 1.02481 1.20929 0.93604 0.82943 1.01904 1.57714 1.78663 1.22883 1.24085 1.19214 0.97201 0.92589 0.78949 1.21556 1.07222 1.20547 1.08232 0.91742 1.24943 0.97002 0.94776 0.97074 1.69943 1.37876 1.24313 1.20430 0.86601 0.83613 0.78586 0.79617 1.19564 1.21036 1.20804 1.01722 0.72654 0.73727 0.72609 1.93541 1.65644 1.79834 1.59710 1.93572 1.86585 1.31009 1.85175 1.55991 1.25263 1.70077 1.37599 1.21470 0.84264 1.01424 0.93329 1.21343 0.94221 0.96167 0.99367 0.90994 1.21606 0.96731 0.96030 1.00940 1.21528 0.95012 1.00298 0.98736 1.21604 0.97792 0.95593 1.00194 1.21114 0.94900 0.95806 0.99049 0.91437 1.21836 0.97662 1.01035 1.00008 1.21613 0.92936 1.01474 0.98931 0.92490 0.92113 0.92501 0.90225 0.92275 0.94862 0.92641 0.92661 0.76331 0.90427 0.89573 0.92056 0.91482 0.92242 0.92304 0.91951 0.92495 0.92625 0.93059 0.92650 0.91420 0.91321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 10.24 37.15 0.38 -2.34 16 2 C 0.13 2.29 6.02 -4.04 -0.02 2.26 16 3 N -0.99 -20.13 2.84 -115.67 -0.33 -20.46 16 4 C 0.24 5.90 5.46 -5.19 -0.03 5.87 16 5 C -0.54 -13.44 8.51 -34.44 -0.29 -13.73 16 6 H 0.06 1.54 6.46 -52.49 -0.34 1.20 16 7 C 0.07 1.72 5.46 -17.82 -0.10 1.62 16 8 N -0.89 -24.94 13.29 55.43 0.74 -24.21 16 9 Si 0.89 20.05 29.54 -169.99 -5.02 15.03 16 10 H -0.27 -5.88 7.11 56.52 0.40 -5.47 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 13 S 2.78 55.07 6.07 -107.50 -0.65 54.42 16 14 O -1.00 -20.50 17.17 -57.17 -0.98 -21.48 16 15 O -0.98 -23.01 16.01 -57.17 -0.92 -23.92 16 16 N -1.13 -18.08 5.93 -10.62 -0.06 -18.14 16 17 C 0.12 1.98 5.60 -4.05 -0.02 1.96 16 18 C -0.09 -1.17 2.29 -90.62 -0.21 -1.38 16 19 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 20 C -0.12 -1.33 5.08 -26.73 -0.14 -1.47 16 21 C -0.12 -1.16 5.92 -26.73 -0.16 -1.32 16 22 C -0.11 -1.13 5.20 -26.73 -0.14 -1.27 16 23 C -0.09 -0.95 2.72 -90.62 -0.25 -1.19 16 24 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 25 C -0.15 -1.46 9.19 37.16 0.34 -1.12 16 26 C -0.11 -1.41 4.49 -26.73 -0.12 -1.53 16 27 H 0.06 0.95 7.96 -51.93 -0.41 0.53 16 28 H 0.06 1.01 8.10 -51.93 -0.42 0.58 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.08 1.37 8.09 -51.93 -0.42 0.95 16 31 H 0.06 0.90 7.79 -51.93 -0.40 0.49 16 32 H 0.03 0.85 8.10 -51.93 -0.42 0.43 16 33 H 0.06 1.51 6.77 -51.93 -0.35 1.16 16 34 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 35 H 0.40 5.34 7.42 -34.48 -0.26 5.08 16 36 H 0.08 1.42 7.76 -51.93 -0.40 1.02 16 37 H 0.09 1.55 5.85 -51.93 -0.30 1.25 16 38 H 0.06 0.67 6.91 -51.93 -0.36 0.31 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 41 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 42 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 45 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 48 H 0.07 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 383.72 15.07 5.78 5.78 Total: -1.00 -30.27 383.72 -10.92 -41.19 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -8.72 Total: 5.43 kcal Atomic # 6 Polarization: -12.89 SS G_CDS: -0.75 Total: -13.64 kcal Atomic # 7 Polarization: -63.15 SS G_CDS: 0.34 Total: -62.81 kcal Atomic # 8 Polarization: -43.50 SS G_CDS: -1.90 Total: -45.40 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 55.07 SS G_CDS: -0.65 Total: 54.42 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -30.27 -10.92 -41.19 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.558 kcal (2) G-P(sol) polarization free energy of solvation -30.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.829 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.917 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.187 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds