Wall clock time and date at job start Tue Mar 31 2020 12:19:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46508 * 109.46881 * 2 1 4 4 C 1.46496 * 120.00186 * 274.99809 * 3 2 1 5 5 C 1.50701 * 109.47382 * 280.12203 * 4 3 2 6 6 H 1.07994 * 119.99670 * 4.16164 * 5 4 3 7 7 C 1.37878 * 119.99780 * 184.16223 * 5 4 3 8 8 N 1.31509 * 119.99988 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99602 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.47039 * 0.02562 * 9 7 5 11 11 H 1.48497 * 109.46821 * 119.99720 * 9 7 5 12 12 H 1.48490 * 109.47097 * 239.99873 * 9 7 5 13 13 S 1.65600 * 119.99728 * 94.99945 * 3 2 1 14 14 O 1.42094 * 106.40434 * 330.06326 * 13 3 2 15 15 O 1.42097 * 106.40120 * 197.13678 * 13 3 2 16 16 N 1.65611 * 107.21609 * 83.60216 * 13 3 2 17 17 C 1.46497 * 120.00096 * 65.30054 * 16 13 3 18 18 C 1.52995 * 109.46931 * 165.69807 * 17 16 13 19 19 H 1.08997 * 109.47221 * 304.99406 * 18 17 16 20 20 C 1.52997 * 109.47451 * 65.00074 * 18 17 16 21 21 C 1.53004 * 109.47339 * 180.02562 * 20 18 17 22 22 C 1.53004 * 109.46614 * 299.99872 * 21 20 18 23 23 C 1.53001 * 109.47491 * 59.99991 * 22 21 20 24 24 H 1.09000 * 109.46942 * 59.99742 * 23 22 21 25 25 C 1.52995 * 109.47063 * 179.97438 * 23 22 21 26 26 C 1.52997 * 109.47096 * 300.00136 * 23 22 21 27 27 H 1.08999 * 109.47075 * 299.99655 * 1 2 3 28 28 H 1.08999 * 109.47197 * 60.00153 * 1 2 3 29 29 H 1.09004 * 109.47190 * 180.02562 * 1 2 3 30 30 H 1.08994 * 109.47501 * 240.00221 * 2 1 3 31 31 H 1.08999 * 109.47197 * 119.99847 * 2 1 3 32 32 H 1.08999 * 109.46866 * 40.12263 * 4 3 2 33 33 H 1.08994 * 109.47177 * 160.11622 * 4 3 2 34 34 H 0.97003 * 119.99535 * 180.02562 * 8 7 5 35 35 H 0.97000 * 119.99637 * 245.29493 * 16 13 3 36 36 H 1.09003 * 109.47118 * 45.69249 * 17 16 13 37 37 H 1.08997 * 109.47066 * 285.69610 * 17 16 13 38 38 H 1.09001 * 109.46652 * 299.99666 * 20 18 17 39 39 H 1.08997 * 109.47453 * 59.99474 * 20 18 17 40 40 H 1.08997 * 109.47415 * 59.99282 * 21 20 18 41 41 H 1.08991 * 109.47098 * 180.02562 * 21 20 18 42 42 H 1.09000 * 109.47238 * 299.99914 * 22 21 20 43 43 H 1.09001 * 109.46644 * 180.02562 * 22 21 20 44 44 H 1.09005 * 109.46982 * 180.02562 * 25 23 22 45 45 H 1.09001 * 109.46868 * 299.99886 * 25 23 22 46 46 H 1.09000 * 109.47442 * 60.00060 * 25 23 22 47 47 H 1.08996 * 109.47274 * 180.02562 * 26 23 22 48 48 H 1.09005 * 109.46532 * 299.99877 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 3.4375 1.6936 -1.9435 6 1 4.0482 0.9131 -1.5144 7 6 3.8283 2.3104 -3.1131 8 7 3.0844 3.2606 -3.6358 9 14 5.4146 1.7962 -3.9552 10 1 6.0626 0.7139 -3.1716 11 1 5.1116 1.3032 -5.3228 12 1 6.3300 2.9622 -4.0408 13 16 2.4120 2.1203 1.4287 14 8 1.5761 1.5435 2.4225 15 8 2.4527 3.5152 1.1611 16 7 3.9615 1.6705 1.8024 17 6 5.0727 2.0886 0.9442 18 6 6.3964 1.8615 1.6771 19 1 6.3724 2.3751 2.6381 20 6 6.6026 0.3627 1.9049 21 6 7.9261 0.1356 2.6383 22 6 9.0776 0.6865 1.7948 23 6 8.8714 2.1853 1.5670 24 1 8.8469 2.6989 2.5281 25 6 10.0232 2.7362 0.7240 26 6 7.5480 2.4124 0.8336 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.3118 1.8789 -1.9110 33 1 2.1832 3.1802 -1.0655 34 1 3.3592 3.6942 -4.4588 35 1 4.1332 1.1303 2.5896 36 1 4.9676 3.1465 0.7032 37 1 5.0616 1.5037 0.0246 38 1 5.7825 -0.0296 2.5062 39 1 6.6266 -0.1510 0.9438 40 1 7.9017 0.6492 3.5994 41 1 8.0732 -0.9322 2.8001 42 1 9.1020 0.1729 0.8337 43 1 10.0205 0.5243 2.3171 44 1 9.8766 3.8041 0.5621 45 1 10.9658 2.5745 1.2469 46 1 10.0481 2.2227 -0.2371 47 1 7.4013 3.4801 0.6709 48 1 7.5725 1.8987 -0.1275 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336899928.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 12:19:59 Heat of formation + Delta-G solvation = -137.830140 kcal Electronic energy + Delta-G solvation = -26953.631045 eV Core-core repulsion = 23360.752602 eV Total energy + Delta-G solvation = -3592.878443 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 318.176 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.02871 -38.29414 -37.66662 -36.87190 -36.33736 -34.65681 -33.10336 -31.82250 -31.49763 -28.48972 -27.21165 -26.24324 -24.93621 -23.28248 -22.93539 -21.47701 -20.68862 -20.23835 -18.68842 -18.54130 -18.22620 -17.29267 -16.71590 -16.28211 -16.00697 -15.50511 -15.33075 -15.24562 -14.81256 -14.73768 -14.56976 -14.27526 -13.90178 -13.75845 -13.61825 -13.36992 -13.27351 -13.21082 -13.12034 -13.00818 -12.73477 -12.72109 -12.65325 -12.39620 -12.27841 -12.18991 -12.07320 -11.88094 -11.72354 -11.68656 -11.55057 -11.27357 -10.96629 -10.81442 -10.56560 -10.31987 -9.76016 -8.13996 -6.26536 -0.25713 1.42529 1.44882 1.55155 2.03774 2.43926 2.64348 3.18649 3.45665 3.75348 3.80369 3.84077 3.99857 4.17136 4.23443 4.39947 4.43325 4.48101 4.50106 4.59453 4.61238 4.67569 4.73087 4.79441 4.81573 4.89514 4.98899 5.01045 5.04663 5.10696 5.17258 5.18656 5.23254 5.30208 5.36018 5.38552 5.42058 5.43908 5.49346 5.51069 5.55736 5.68563 5.81186 5.93670 6.14595 6.27329 6.85751 7.43041 8.94754 Molecular weight = 318.18amu Principal moments of inertia in cm(-1) A = 0.010238 B = 0.005944 C = 0.004319 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2734.220164 B = 4709.198276 C = 6481.331239 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.123 3.877 3 N -0.995 5.995 4 C 0.258 3.742 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.012 3.988 8 N -0.930 5.930 9 Si 0.951 3.049 10 H -0.253 1.253 11 H -0.284 1.284 12 H -0.283 1.283 13 S 2.798 3.202 14 O -1.007 7.007 15 O -1.020 7.020 16 N -1.111 6.111 17 C 0.123 3.877 18 C -0.084 4.084 19 H 0.083 0.917 20 C -0.115 4.115 21 C -0.114 4.114 22 C -0.113 4.113 23 C -0.086 4.086 24 H 0.075 0.925 25 C -0.148 4.148 26 C -0.114 4.114 27 H 0.047 0.953 28 H 0.046 0.954 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.085 0.915 32 H 0.016 0.984 33 H 0.020 0.980 34 H 0.264 0.736 35 H 0.421 0.579 36 H 0.051 0.949 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.056 0.944 40 H 0.068 0.932 41 H 0.071 0.929 42 H 0.054 0.946 43 H 0.073 0.927 44 H 0.051 0.949 45 H 0.066 0.934 46 H 0.048 0.952 47 H 0.057 0.943 48 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.797 -8.282 11.385 17.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.002 4.002 3 N -0.837 5.837 4 C 0.134 3.866 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.187 4.187 8 N -0.570 5.570 9 Si 0.776 3.224 10 H -0.176 1.176 11 H -0.210 1.210 12 H -0.209 1.209 13 S 2.806 3.194 14 O -0.991 6.991 15 O -1.004 7.004 16 N -0.875 5.875 17 C -0.003 4.003 18 C -0.104 4.104 19 H 0.102 0.898 20 C -0.153 4.153 21 C -0.152 4.152 22 C -0.151 4.151 23 C -0.105 4.105 24 H 0.094 0.906 25 C -0.205 4.205 26 C -0.152 4.152 27 H 0.066 0.934 28 H 0.065 0.935 29 H 0.109 0.891 30 H 0.099 0.901 31 H 0.104 0.896 32 H 0.034 0.966 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.257 0.743 36 H 0.069 0.931 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.075 0.925 40 H 0.087 0.913 41 H 0.090 0.910 42 H 0.073 0.927 43 H 0.092 0.908 44 H 0.070 0.930 45 H 0.085 0.915 46 H 0.067 0.933 47 H 0.075 0.925 48 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 10.171 -7.473 11.584 17.131 hybrid contribution 0.554 -0.069 -0.980 1.128 sum 10.725 -7.542 10.604 16.863 Atomic orbital electron populations 1.22198 0.96066 1.03167 1.01318 1.21230 0.94530 0.81223 1.03266 1.57607 1.79369 1.24084 1.22596 1.18750 0.96547 0.91065 0.80231 1.21823 1.07177 1.20161 1.07857 0.90484 1.25769 1.00151 0.94804 0.97989 1.70081 1.39934 1.25899 1.21078 0.85609 0.79755 0.78554 0.78497 1.17635 1.21037 1.20930 1.01163 0.73239 0.72800 0.72222 1.93527 1.66379 1.79604 1.59543 1.93524 1.87348 1.33854 1.85692 1.55569 1.23764 1.70034 1.38105 1.21426 0.86056 0.99438 0.93411 1.21310 0.92013 0.97770 0.99274 0.89837 1.21609 0.98368 0.94357 1.00917 1.21511 0.93640 1.01278 0.98725 1.21605 0.98673 0.94667 1.00120 1.21093 0.93588 0.96718 0.99075 0.90643 1.21835 0.98174 1.00685 0.99829 1.21639 0.94317 1.00623 0.98663 0.93392 0.93517 0.89102 0.90057 0.89625 0.96609 0.96214 0.92738 0.74280 0.93069 0.91207 0.91184 0.92535 0.91295 0.91036 0.92677 0.90839 0.92997 0.91459 0.93271 0.92452 0.92717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.17 10.24 71.98 0.74 -4.43 16 2 C 0.12 4.07 6.02 86.38 0.52 4.59 16 3 N -1.00 -40.62 2.84 -519.86 -1.48 -42.10 16 4 C 0.26 12.96 5.46 85.63 0.47 13.43 16 5 C -0.53 -26.93 8.51 25.60 0.22 -26.71 16 6 H 0.08 3.64 6.46 -2.91 -0.02 3.63 16 7 C 0.01 0.64 5.46 84.66 0.46 1.11 16 8 N -0.93 -53.82 13.29 21.45 0.28 -53.53 16 9 Si 0.95 41.26 29.54 68.60 2.03 43.29 16 10 H -0.25 -10.13 7.11 99.48 0.71 -9.42 16 11 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 12 H -0.28 -12.28 7.11 99.48 0.71 -11.58 16 13 S 2.80 110.73 6.07 -56.49 -0.34 110.39 16 14 O -1.01 -40.03 17.17 -128.00 -2.20 -42.23 16 15 O -1.02 -49.48 16.01 -128.00 -2.05 -51.53 16 16 N -1.11 -34.52 5.93 -187.50 -1.11 -35.63 16 17 C 0.12 4.00 5.60 86.38 0.48 4.48 16 18 C -0.08 -2.04 2.29 -10.79 -0.02 -2.07 16 19 H 0.08 1.87 8.14 -2.39 -0.02 1.85 16 20 C -0.11 -2.36 5.08 30.59 0.16 -2.21 16 21 C -0.11 -1.86 5.92 30.60 0.18 -1.68 16 22 C -0.11 -1.90 5.20 30.60 0.16 -1.74 16 23 C -0.09 -1.63 2.72 -10.80 -0.03 -1.66 16 24 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 25 C -0.15 -2.64 9.19 71.98 0.66 -1.98 16 26 C -0.11 -2.79 4.49 30.59 0.14 -2.65 16 27 H 0.05 1.54 7.96 -2.39 -0.02 1.52 16 28 H 0.05 1.54 8.10 -2.39 -0.02 1.52 16 29 H 0.09 2.15 8.14 -2.38 -0.02 2.13 16 30 H 0.08 2.68 8.09 -2.39 -0.02 2.66 16 31 H 0.09 2.38 7.79 -2.39 -0.02 2.37 16 32 H 0.02 0.84 8.10 -2.39 -0.02 0.82 16 33 H 0.02 1.14 6.77 -2.39 -0.02 1.12 16 34 H 0.26 14.46 8.31 -92.71 -0.77 13.69 16 35 H 0.42 10.21 7.42 -96.74 -0.72 9.49 16 36 H 0.05 1.94 7.76 -2.39 -0.02 1.92 16 37 H 0.07 2.51 5.85 -2.39 -0.01 2.50 16 38 H 0.07 1.31 6.91 -2.39 -0.02 1.29 16 39 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 40 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 42 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 43 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 44 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 45 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 46 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 47 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 48 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 Total: -1.00 -66.10 383.72 -0.54 -66.63 By element: Atomic # 1 Polarization: 26.04 SS G_CDS: 0.20 Total: 26.24 kcal Atomic # 6 Polarization: -25.65 SS G_CDS: 4.13 Total: -21.52 kcal Atomic # 7 Polarization: -128.96 SS G_CDS: -2.30 Total: -131.27 kcal Atomic # 8 Polarization: -89.51 SS G_CDS: -4.25 Total: -93.76 kcal Atomic # 14 Polarization: 41.26 SS G_CDS: 2.03 Total: 43.29 kcal Atomic # 16 Polarization: 110.73 SS G_CDS: -0.34 Total: 110.39 kcal Total: -66.10 -0.54 -66.63 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336899928.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.196 kcal (2) G-P(sol) polarization free energy of solvation -66.096 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.635 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds